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Lu D, Xu B, Yu Q, Liu Z, Ren M, Wang Y, Zhang S, Wu C, Shen Y. Identification of potential light deficiency response regulators in endangered species Magnolia sinostellata. Sci Rep 2022; 12:22536. [PMID: 36581613 PMCID: PMC9800573 DOI: 10.1038/s41598-022-25393-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 11/29/2022] [Indexed: 12/30/2022] Open
Abstract
Magnolia sinostellata is one of the endangered species in China and largely suffers light deficiency stress in the understory of forest. However, the weak light response molecular mechanism remains unclear. More importantly, hub genes in the molecular network have not been pinpointed. To explore potential regulators in the mechanism, weighted gene co-expression network analysis (WGCNA) was performed to analysis the trancriptome data of M. sinostellata leaves subjected to weak light with different time points. Gene co-expression analysis illustrated that module 1, 2 and 3 were closely associated with light deficiency treatment, which. Gene ontology and KEGG analyses showed that genes in module 1 mainly participated in amino and nucleotide metabolism, module 2 mostly involved in carbon fixation and module 3 mostly regulated photosynthesis related pathways, among which 6, 7 and 8 hub genes were identified, respectively. Hub genes isoform_107196 in module 1 and isoform_55976 in module 2 were unique to M. sinostellata. This study found that light deficiency inhibited photosynthesis and stress tolerance, while improved carbon metabolism and flowering related pathways in M. sinostellata, which can impact its accumulation reserves of growth and reproduction in the next season. In addition, key shade response regulators identified in this study have laid a firm foundation for further investigation of shade response molecular mechanism and protection of other shade sensitive plants.
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Affiliation(s)
- Danying Lu
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China
| | - Bin Xu
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China
| | - Qin Yu
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China
| | - Zhigao Liu
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China.
| | - Mingjie Ren
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China
| | - Yaling Wang
- Xi'an Botanical Garden of Shanxi Academy of Science, Xi'an , 710061, Shanxi, China
| | - Shouzhou Zhang
- Fairy Lake Botanical Garden, Shenzhen, 518004, Guangdong, China
| | - Chao Wu
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China
| | - Yamei Shen
- College of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, Zhejiang, China.
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da Rocha Nina Junior A, Furtunato Maia JM, Vitor Martins SC, Gonçalves JFDC. Photochemical Efficiency and Oxidative Metabolism of Tree Species during Acclimation to High and Low Irradiance. PLANTS 2020; 9:plants9081047. [PMID: 32824598 PMCID: PMC7463730 DOI: 10.3390/plants9081047] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 08/05/2020] [Accepted: 08/05/2020] [Indexed: 01/31/2023]
Abstract
The balance between efficiency of absorption and use of light energy is fundamental for plant metabolism and to avoid photoinhibition. Here, we investigated the effects of light environments on the photosynthetic apparatus of tropical tree species of three successional groups (pioneer, mid-, and late successional) subjected to different light conditions: full sunlight (FS), moderate shade (MS), and deep shade (DS). Twenty-nine ecophysiological parameters were correlated with each other. The pioneer species exhibited better photochemical performance and a more efficient antioxidant enzymatic system in comparison with the other successional groups. Plants in FS showed higher intensity of lipid peroxidation, with superoxide dismutase having a prominent role in the antioxidant system. At lower irradiance the enzymatic activity was reduced, and the photochemical efficiency was the preferred way to reduce oxidative damages. P was highly related to photochemical yield, and the N modulation amplified the light harvesting complex in DS to the detriment of the antioxidant system. Despite evidence of cell damage, most species exhibited the ability to adjust to high irradiance. Contrary to expectations, Hymenea courbaril (late-successional) exhibited higher plasticity to fluorescence, nutritional, and antioxidant parameters. Only Carapa guianensis (late-successional) displayed photoinhibitory damage in FS, and Ochroma pyramidale (pioneer) did not survive in DS, suggesting that acclimation to shade is more challenging than to high irradiance.
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Affiliation(s)
- Adamir da Rocha Nina Junior
- Federal Institute of Education, Science and Technology of Amazonas (IFAM)–Campus Humaitá, BR230 Highway, KM 07, Humaitá-AM 69.800-000, Brazil;
| | - Jair Max Furtunato Maia
- University of State of Amazonas (UEA), Av. Djalma Batista, 2470, Manaus-AM 69.050-010, Brazil;
| | | | - José Francisco de Carvalho Gonçalves
- National Institute for Amazonian Research (INPA), Laboratory of Plant Physiology and Biochemistry, Av. André Araújo, 2936, Aleixo, Manaus-AM 69.011-970, Brazil
- Correspondence:
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