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Bjornson S, Verbruggen H, Upham NS, Steenwyk JL. Reticulate evolution: Detection and utility in the phylogenomics era. Mol Phylogenet Evol 2024; 201:108197. [PMID: 39270765 DOI: 10.1016/j.ympev.2024.108197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Revised: 08/13/2024] [Accepted: 09/08/2024] [Indexed: 09/15/2024]
Abstract
Phylogenomics has enriched our understanding that the Tree of Life can have network-like or reticulate structures among some taxa and genes. Two non-vertical modes of evolution - hybridization/introgression and horizontal gene transfer - deviate from a strictly bifurcating tree model, causing non-treelike patterns. However, these reticulate processes can produce similar patterns to incomplete lineage sorting or recombination, potentially leading to ambiguity. Here, we present a brief overview of a phylogenomic workflow for inferring organismal histories and compare methods for distinguishing modes of reticulate evolution. We discuss how the timing of coalescent events can help disentangle introgression from incomplete lineage sorting and how horizontal gene transfer events can help determine the relative timing of speciation events. In doing so, we identify pitfalls of certain methods and discuss how to extend their utility across the Tree of Life. Workflows, methods, and future directions discussed herein underscore the need to embrace reticulate evolutionary patterns for understanding the timing and rates of evolutionary events, providing a clearer view of life's history.
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Affiliation(s)
- Saelin Bjornson
- School of BioSciences, University of Melbourne, Victoria, Australia
| | - Heroen Verbruggen
- School of BioSciences, University of Melbourne, Victoria, Australia; CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal
| | - Nathan S Upham
- School of Life Sciences, Arizona State University, Tempe, AZ, USA.
| | - Jacob L Steenwyk
- Howards Hughes Medical Institute and the Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
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2
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Wu L, Ren Y, Wang X, Zhang Y, Wang J. The Slow Growth of Adventitious Roots in Tetraploid Hybrid Poplar ( Populus simonii × P. nigra var. italica) May Be Caused by Endogenous Hormone-Mediated Meristem Shortening. PLANTS (BASEL, SWITZERLAND) 2024; 13:1430. [PMID: 38891239 PMCID: PMC11174411 DOI: 10.3390/plants13111430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/14/2024] [Accepted: 05/17/2024] [Indexed: 06/21/2024]
Abstract
Polyploidization produces abundant phenotypic variation. Little is currently known about adventitious root (AR) development variation due to polyploidization. In this study, we analyzed the morphological, cytological, and physiological variations in AR development between tetraploid and diploid Populus plants during in vitro rooting culture. Compared to the diploids, the AR formation times and rooting rates of the tetraploids' stem explants had non-significant changes. However, the tetraploid ARs exhibited significantly slower elongation growth than the diploid ARs. Cytological observation showed that the tetraploid ARs were characterized by shorter root meristems and reduced meristem cell numbers, suggesting the reasons for the slow AR elongation. Analysis of hormones and related metabolites during AR development demonstrated that the total auxin, cytokinin, and jasmonic acid contents were significantly lower in the tetraploid ARs than in those of the diploids, and that the ratio of total auxins to total CKs at 0 h of AR development was also lower in the tetraploids than in the diploids, whereas the total salicylic acid content of the tetraploids was consistently higher than that of the diploids. qPCR analysis showed that the expression levels of several hormone signaling and cell division-related genes in the tetraploid ARs significantly differed from those in the diploids. In conclusion, the slow elongation of the tetraploid ARs may be caused by the endogenous hormone-mediated meristem shortening. Our findings enhance the understanding of polyploidization-induced variation in AR development of forest trees.
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Affiliation(s)
- Lixia Wu
- State Key Laboratory of Tree Genetics and Breeding, Beijing Forestry University, Beijing 100083, China; (L.W.); (Y.R.); (X.W.); (Y.Z.)
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Yuxin Ren
- State Key Laboratory of Tree Genetics and Breeding, Beijing Forestry University, Beijing 100083, China; (L.W.); (Y.R.); (X.W.); (Y.Z.)
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Xuefang Wang
- State Key Laboratory of Tree Genetics and Breeding, Beijing Forestry University, Beijing 100083, China; (L.W.); (Y.R.); (X.W.); (Y.Z.)
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Yuntong Zhang
- State Key Laboratory of Tree Genetics and Breeding, Beijing Forestry University, Beijing 100083, China; (L.W.); (Y.R.); (X.W.); (Y.Z.)
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Jun Wang
- State Key Laboratory of Tree Genetics and Breeding, Beijing Forestry University, Beijing 100083, China; (L.W.); (Y.R.); (X.W.); (Y.Z.)
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
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3
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Chen T, Wang Z, Wang J, Liu J, Zhang R, Jia X, Yu C, Yin Y, Creech D. Transcriptomic and metabolomic analyses unveil the growth advantage mechanism conferred by heterosis of Michelia 'Zhongshanhanxiao'. TREE PHYSIOLOGY 2023; 43:1454-1466. [PMID: 37099801 DOI: 10.1093/treephys/tpad046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 04/11/2023] [Indexed: 06/19/2023]
Abstract
Michelia compressa (Maxim.) Sarg. is one of the important timber trees in Taiwan province, P. R. China. Michelia 'Zhongshanhanxiao' is a group of variants found among the progeny of M. compressa that exhibit higher growth rates compared with normal individuals, with a significantly increased stem diameter and height, as well as enlarged leaves and flowers. However, the molecular mechanisms fostering the growth advantage and morphological variations are unknown and deserve further study. Through analysing the transcriptome, metabolome and physiological processes of leaves, we identified remarkable differences in gene expression and metabolic profiles between Michelia 'Zhongshanhanxiao' and both the maternal M. compressa and its normal progeny. These differences were widely associated with a plant-pathogen interaction, phenylpropanoid biosynthesis, cyanoamino acid metabolism, carbon fixation in photosynthetic organisms and plant hormone signal transduction. Additionally, physiological measurements showed that Michelia 'Zhongshanhanxiao' possesses stronger photosynthetic capacity and higher plant hormone content. These results suggest that the heterosis of Michelia 'Zhongshanhanxiao' is regulated by candidates related to cell division, resistance to pathogens and the accumulation of organic compounds. The findings of this study provide crucial information on the molecular mechanisms underlying the growth advantages conferred by heterosis in trees.
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Affiliation(s)
- Tingting Chen
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Zhiquan Wang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Junjie Wang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Jiaqi Liu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Rui Zhang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Xiaoyu Jia
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Chaoguang Yu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - Yunlong Yin
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
- Nanjing Botanical Garden Mem. Sun Yat-Sen, No. 1, Qianhu Village, Zhongshan Gate, Nanjing 210014, China
| | - David Creech
- Arthur Temple College of Forestry and Agriculture, Stephen F. Austin State University, Nacogdoches, TX 75962, USA
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Zhu QL, Yan K, Wang NZ, Ma SQ, Lu DS, Su XH, Yuan ZS, Dong YF, Wang YP, Ding CJ. The structure and assembly of rhizobacterial communities are influenced by poplar genotype. Front Microbiol 2022; 13:1052567. [DOI: 10.3389/fmicb.2022.1052567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 11/14/2022] [Indexed: 12/02/2022] Open
Abstract
The interaction between plants and microbes dominates plant growth and fitness in specific environments. The study of the relationship between plant genotypes and rhizobacterial community structure would provide a deep insight into the recruitment strategies of plants toward soil bacteria. In this study, three genotypes of 18-year-old mature poplar (H1, H2, and H3) derived from four different parents were selected from a germplasm nursery of Populus deltoides. Rhizosphere soil carbon, nitrogen, and phosphorus properties as well as the 16S rDNA sequences of rhizobacterial communities were analyzed to determine the relationship between poplar genotypes and rhizobacterial communities assembly. The results showed there were significant differences in the diversity (Chao1, ACE index, and Shannon index) of rhizobacterial communities between H1 and H2, as well as between H2 and H3, but no difference between H1 and H3. Principal component analysis also revealed a similar structure of rhizobacterial communities between H1 and H3, whereas the rhizobacterial communities of H2 demonstrated significant differences from H1 and H3. Linear discriminant effect size analysis indicated that there were 11 and 14 different biomarkers in the H1 and H3 genotype, respectively, but 42 in the H2 genotype. Co-occurrence network analysis indicated that the rhizobacterial communities of H2 had a distinct network structure compared to those of the other two genotypes, whereas H1 and H3 had a similar pattern of co-occurrence network. Threshold indicator taxa analysis revealed that 63 genera responded significantly to NO3–-N content and 58 genera to NH4+-N/NO3–-N ratio. Moreover, the stochastic assembly process was found to be decreased with increasing NO3–-N content and fluctuated with increasing NH4+-N/NO3–-N ratio. All results indicated that the structure of poplar rhizobacterial communities were influenced by host genotypes, and available nitrogen might play a dominant role in the assembly of rhizobacterial communities. This study would promote the future selection and utilization of rhizobacteria in poplar breeding.
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Kondratovičs T, Zeps M, Rupeika D, Zeltiņš P, Gailis A, Matisons R. Morphological and Physiological Responses of Hybrid Aspen ( Populus tremuloides Michx. × Populus tremula L.) Clones to Light In Vitro. PLANTS (BASEL, SWITZERLAND) 2022; 11:2692. [PMID: 36297714 PMCID: PMC9607416 DOI: 10.3390/plants11202692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/04/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]
Abstract
Micropropagation of fast-growing tree genotypes such as the hybrid aspen (Populus tremuloides Michx. × Populus tremula L.) is increasing. The efficiency of micropropagation depends on the luminaires, hence luminescent electric diodes (LED), which emit light of a narrow spectrum, are gaining popularity. Mostly, different LEDs are combined to increase the photosynthetic efficiency. However, light also acts as an environmental signal, which triggers specific responses in plants, which are genotype specific, and regarding hybrid aspen, are likely affected by heterosis. In this study, morphological and physiological responses of clones of hybrid aspen with contrasting field performance to the spectral composition of illumination were studied in vitro. Among the 15 variables measured, area of leaves and concentration and ratio of chlorophyll a and b explained most of the variance (58.6%), thereby linking a specific combination of traits to productivity. These traits and their responses to light were affected by heterosis, as indicated by the clone-treatment interaction, particularly for the clone's moderate productivity. The top-performing clones were little sensitive to illumination due to efficient photosystems. Nevertheless, illumination with wider spectral composition had generally positive effects on plantlet performance. Accordingly, clone-specific illumination protocols and luminaries capable of it are advantageous for the efficiency of micropropagation of hybrid aspen.
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Grünhofer P, Stöcker T, Guo Y, Li R, Lin J, Ranathunge K, Schoof H, Schreiber L. Populus × canescens root suberization in reaction to osmotic and salt stress is limited to the developing younger root tip region. PHYSIOLOGIA PLANTARUM 2022; 174:e13765. [PMID: 36281836 DOI: 10.1111/ppl.13765] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 08/05/2022] [Accepted: 08/12/2022] [Indexed: 06/16/2023]
Abstract
Populus is a valuable and fast-growing tree species commonly cultivated for economic and scientific purposes. But most of the poplar species are sensitive to drought and salt stress. Thus, we compared the physiological effects of osmotic stress (PEG8000) and salt treatment (NaCl) on poplar roots to identify potential strategies for future breeding or genetic engineering approaches. We investigated root anatomy using epifluorescence microscopy, changes in root suberin composition and amount using gas chromatography, transcriptional reprogramming using RNA sequencing, and modifications of root transport physiology using a pressure chamber. Poplar roots reacted to the imposed stress conditions, especially in the developing younger root tip region, with remarkable differences between both types of stress. Overall, the increase in suberin content was surprisingly small, but the expression of key suberin biosynthesis genes was strongly induced. Significant reductions of the radial water transport in roots were only observed for the osmotic and not the hydrostatic hydraulic conductivity. Our data indicate that the genetic enhancement of root suberization processes in poplar might be a promising target to convey increased tolerance, especially against toxic sodium chloride.
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Affiliation(s)
- Paul Grünhofer
- Department of Ecophysiology, Institute of Cellular and Molecular Botany, University of Bonn, Bonn, Germany
| | - Tyll Stöcker
- Department of Crop Bioinformatics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany
| | - Yayu Guo
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Ruili Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, China
| | - Kosala Ranathunge
- UWA School of Biological Sciences, The University of Western Australia, Perth, Western Australia, Australia
| | - Heiko Schoof
- Department of Crop Bioinformatics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany
| | - Lukas Schreiber
- Department of Ecophysiology, Institute of Cellular and Molecular Botany, University of Bonn, Bonn, Germany
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Ding C, Zhang W, Wang Y, Ding M, Wang X, Li A, Liang D, Su X. Study on the differences of phyllosphere microorganisms between poplar hybrid offspring and their parents. PeerJ 2022; 10:e12915. [PMID: 35310169 PMCID: PMC8932310 DOI: 10.7717/peerj.12915] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 01/20/2022] [Indexed: 01/11/2023] Open
Abstract
The females and males of dioecious plants have evolved sex-specific characteristics in terms of their morphological and physiological properties. However, the differentiation of phyllosphere microorganism of dioecious plants between parents and hybrid offspring remain largely unexplored. Here, the phyllosphere bacterial and fungal community diversity and composition of female (Populus nigra 'DH5' (PNDH5)), male (P. simonii 'DH4' (PSDH4)), and the hybrid offspring (P. simonii × P. nigra 'DH1' (PSPNDH1), P. simonii × P. nigra 'DH2' (PSPNDH2), P. simonii × P. nigra 'DH3' (PSPNDH3)) were investigated using 16S rDNA/ITS rDNA gene-based Illumina NovaSeq 6000 sequencing. There was considerable variation of plant height, diameter at breast height, leaf area, length of petioles, leaf moisture content, and starch among different samples, and PSDH2 owned the highest plant height, diameter at breast height, and length of petioles. No distinct differences of phyllosphere bacterial community diversity were observed among PSDH4, PNDH5, PSPNDH1, PSPNDH2, and PSPNDH3; while, PSPNDH2 owned the highest fungal Pielou_e index, Shannon index, and Simpson index. Firmicutes and Ascomycota were the predominant phyllosphere bacterial and fungal community at the phylum level, respectively. Bacilli and Gammaproteobacteria were the two most dominant bacterial classes regardless of parent and the hybrid offspring. The predominant phyllosphere fungal community was Dothideomycetes at the class level. The NMDS demonstrated that phyllosphere microbial community obviously differed between parents and offspring, while the phyllosphere microbial community presented some similarities under different hybrid progeny. Also, leaf characteristics contributed to the differentiation of phyllosphere bacterial and fungal communities between parents and hybrid offspring. These results highlighted the discrimination of phyllosphere microorganisms on parent and hybrid offspring, which provided clues to potential host-related species in the phyllosphere environment.
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Affiliation(s)
- Changjun Ding
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China,Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Weixi Zhang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China,Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Yanbo Wang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China,Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Mi Ding
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China,Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Xiaojiang Wang
- Inner Mongolia Academy of Forestry Sciences, Hohhot, Inner Mongolia, China
| | - Aiping Li
- Inner Mongolia Academy of Forestry Sciences, Hohhot, Inner Mongolia, China
| | - Dejun Liang
- Liaoning Provincial Poplar Institute, Gaizhou, Liaoning, China
| | - Xiaohua Su
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China,Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
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Grünhofer P, Guo Y, Li R, Lin J, Schreiber L. Hydroponic cultivation conditions allowing the reproducible investigation of poplar root suberization and water transport. PLANT METHODS 2021; 17:129. [PMID: 34911563 PMCID: PMC8672600 DOI: 10.1186/s13007-021-00831-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 12/07/2021] [Indexed: 06/14/2023]
Abstract
BACKGROUND With increasing joint research cooperation on national and international levels, there is a high need for harmonized and reproducible cultivation conditions and experimental protocols in order to ensure the best comparability and reliability of acquired data. As a result, not only comparisons of findings of different laboratories working with the same species but also of entirely different species would be facilitated. As Populus is becoming an increasingly important genus in modern science and agroforestry, the integration of findings with previously gained knowledge of other crop species is of high significance. RESULTS To ease and ensure the comparability of investigations of root suberization and water transport, on a high degree of methodological reproducibility, we set up a hydroponics-based experimental pipeline. This includes plant cultivation, root histochemistry, analytical investigation, and root water transport measurement. A 5-week-long hydroponic cultivation period including an optional final week of stress application resulted in a highly consistent poplar root development. The poplar roots were of conical geometry and exhibited a typical Casparian band development with subsequent continuously increasing suberization of the endodermis. Poplar root suberin was composed of the most frequently described suberin substance classes, but also high amounts of benzoic acid derivatives could be identified. Root transport physiology experiments revealed that poplar roots in this developmental stage have a two- to tenfold higher hydrostatic than osmotic hydraulic conductivity. Lastly, the hydroponic cultivation allowed the application of gradually defined osmotic stress conditions illustrating the precise adjustability of hydroponic experiments as well as the previously reported sensitivity of poplar plants to water deficits. CONCLUSIONS By maintaining a high degree of harmonization, we were able to compare our results to previously published data on root suberization and water transport of barley and other crop species. Regarding hydroponic poplar cultivation, we enabled high reliability, reproducibility, and comparability for future experiments. In contrast to abiotic stress conditions applied during axenic tissue culture cultivation, this experimental pipeline offers great advantages including the growth of roots in the dark, easy access to root systems before, during, and after stress conditions, and the more accurate definition of the developmental stages of the roots.
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Affiliation(s)
- Paul Grünhofer
- Department of Ecophysiology, Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, 53115, Bonn, Germany.
| | - Yayu Guo
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Ruili Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Lukas Schreiber
- Department of Ecophysiology, Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, 53115, Bonn, Germany
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9
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Flanagan LB, Nikkel DJ, Scherloski LM, Tkach RE, Smits KM, Selinger LB, Rood SB. Multiple processes contribute to methane emission in a riparian cottonwood forest ecosystem. THE NEW PHYTOLOGIST 2021; 229:1970-1982. [PMID: 33006137 DOI: 10.1111/nph.16977] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
Methane emission from trees may partially or completely offset the methane sink in upland soils, the only process that has been regularly included in methane budgets for forest ecosystems. Our objective was to analyze multiple biogeochemical processes that influence the production, oxidation and transport of methane in a riparian cottonwood ecosystem and its adjacent river. We combined chamber flux measurements on tree stems, forest soil and the river surface with eddy covariance measurements of methane net ecosystem exchange. In addition, we tested whether methanogens were present in cottonwood stems, shallow soil layers and alluvial groundwater. Average midday peak in net methane emission measured by eddy covariance was c. 12 nmol m-2 s-1 . The average uptake of methane by soils (0.87 nmol m-2 s-1 ) was largely offset by tree stem methane emission (0.75 nmol m-2 s-1 ). There was evidence of methanogens in tree stems but not in shallow soil. Growing season (May-September) cumulative net methane emission (17.4 mmol CH4 m-2 ) included methane produced in cottonwood stems and methane input to the nocturnal boundary layer from the forest and the adjacent river. The multiple processes contributing to methane emission illustrated the linked nature of these adjacent terrestrial and aquatic ecosystems.
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Affiliation(s)
- Lawrence B Flanagan
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - Dylan J Nikkel
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - Lauren M Scherloski
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - Rachel E Tkach
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - Kristian M Smits
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - L Brent Selinger
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
| | - Stewart B Rood
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, AB, T1K 3M4, Canada
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10
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Variation and Genetic Parameters of Leaf Morphological Traits of Eight Families from Populus simonii × P. nigra. FORESTS 2020. [DOI: 10.3390/f11121319] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Leaf morphology in Populus L. varies extensively among sections, species and clones under strong genetic control. P. nigra L. (section Aigeiros), with large and triangular leaves, is a commercial forest tree of economic importance for fast growth and high yield in Europe. P. simonii Carr. (section Tacamahaca) with small land rhomboid ovate leaves performs cold and dry resistance/tolerance in the semi-arid region of Northern China. Leaf morphological traits could be used as early indicators to improve the efficiency of selection. In order to investigate the genetic variation pattern of leaf morphology traits, estimate breeding values (combining ability), as well as evaluate crossing combinations of parents, 1872 intersectional progenies from eight families (P. simonii × P. nigra) and their parents were planted with cuttings for the clonal replicate field trial in Northern China. Four leaf size traits (area, perimeter, length, width) and roundness were measured with leaf samples from the 1-year-old clonal plantation. Significant differences regarding leaf traits were found between and among three female clones of P. simonii from Inner Mongolia, China and six male clones of P. nigra from Casale Monferrato, Italy. The genetic variation coefficient, heritability and genetic variance component of most traits in male parents were greater than these of female parents. Heritability estimates of male and female parents were above 0.56 and 0.17, respectively. Plentiful leaf variations with normal and continuous distributions exited in the hybrid progenies among and within families with the genetic variation coefficient and heritability above 28.49 and 0.24, respectively. Heritability estimates showed that leaf area was the most heritable trait, followed by leaf width. The breeding value ranking of parents allowed us to select the parental clones for new crosses and extend the mating design. Two male parental clones (N430 and N429) had greater breeding values (general combining ability, GCA) of leaf size traits than other clones. The special combining ability (SCA) of the crossing combination between P. simonii cl. ZL-3 and P. nigra cl. N430 was greater than that of others. Eight putatively superior genotypes, most combined with the female parental clone ZL-3, can be selected for future testing under near-commercial conditions. Significant genetic and phenotypic correlations were found between five leaf morphology traits with the coefficients above 0.9, except for leaf roundness. The results showed that leaf morphology traits were under strong genetic control and the parental clones with high GCA and SCA effects could be utilized in heterosis breeding, which will provide a starting point for devising a new selection strategy of parents and progenies.
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11
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Wagner MR, Roberts JH, Balint-Kurti P, Holland JB. Heterosis of leaf and rhizosphere microbiomes in field-grown maize. THE NEW PHYTOLOGIST 2020; 228:1055-1069. [PMID: 32521050 DOI: 10.1111/nph.16730] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 05/28/2020] [Indexed: 05/21/2023]
Abstract
Macroorganisms' genotypes shape their phenotypes, which in turn shape the habitat available to potential microbial symbionts. This influence of host genotype on microbiome composition has been demonstrated in many systems; however, most previous studies have either compared unrelated genotypes or delved into molecular mechanisms. As a result, it is currently unclear whether the heritability of host-associated microbiomes follows similar patterns to the heritability of other complex traits. We take a new approach to this question by comparing the microbiomes of diverse maize inbred lines and their F1 hybrid offspring, which we quantified in both rhizosphere and leaves of field-grown plants using 16S-v4 and ITS1 amplicon sequencing. We show that inbred lines and hybrids differ consistently in the composition of bacterial and fungal rhizosphere communities, as well as leaf-associated fungal communities. A wide range of microbiome features display heterosis within individual crosses, consistent with patterns for nonmicrobial maize phenotypes. For leaf microbiomes, these results were supported by the observation that broad-sense heritability in hybrids was substantially higher than narrow-sense heritability. Our results support our hypothesis that at least some heterotic host traits affect microbiome composition in maize.
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Affiliation(s)
- Maggie R Wagner
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, 66045, USA
- Kansas Biological Survey, University of Kansas, Lawrence, KS, 66045, USA
| | - Joseph H Roberts
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Peter Balint-Kurti
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA
- Plant Science Research Unit, Agricultural Research Service, United States Department of Agriculture, Raleigh, NC, 27695, USA
| | - James B Holland
- Plant Science Research Unit, Agricultural Research Service, United States Department of Agriculture, Raleigh, NC, 27695, USA
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA
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12
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Quantitative genetic architecture of adaptive phenology traits in the deciduous tree, Populus trichocarpa (Torr. and Gray). Heredity (Edinb) 2020; 125:449-458. [PMID: 32901141 PMCID: PMC7784687 DOI: 10.1038/s41437-020-00363-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 08/26/2020] [Accepted: 08/27/2020] [Indexed: 12/02/2022] Open
Abstract
In a warming climate, the ability to accurately predict and track shifting environmental conditions will be fundamental for plant survival. Environmental cues define the transitions between growth and dormancy as plants synchronise development with favourable environmental conditions, however these cues are predicted to change under future climate projections which may have profound impacts on tree survival and growth. Here, we use a quantitative genetic approach to estimate the genetic basis of spring and autumn phenology in Populus trichocarpa to determine this species capacity for climate adaptation. We measured bud burst, leaf coloration, and leaf senescence traits across two years (2017–2018) and combine these observations with measures of lifetime growth to determine how genetic correlations between phenology and growth may facilitate or constrain adaptation. Timing of transitions differed between years, although we found strong cross year genetic correlations in all traits, suggesting that genotypes respond in consistent ways to seasonal cues. Spring and autumn phenology were correlated with lifetime growth, where genotypes that burst leaves early and shed them late had the highest lifetime growth. We also identified substantial heritable variation in the timing of all phenological transitions (h2 = 0.5–0.8) and in lifetime growth (h2 = 0.8). The combination of additive variation and favourable genetic correlations in phenology traits suggests that populations of cultivated varieties of P. Trichocarpa may have the capability to adapt their phenology to climatic changes without negative impacts on growth.
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13
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Nielson KG, Woodman SG, Rood SB. Prospective impacts of oil spills on floodplain vegetation: Both crude oil and diluted bitumen increase foliar temperatures, senescence and abscission in three cottonwood (Populus) species. PLoS One 2020; 15:e0230630. [PMID: 32218607 PMCID: PMC7100927 DOI: 10.1371/journal.pone.0230630] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 03/04/2020] [Indexed: 11/19/2022] Open
Abstract
Oil pipelines are vulnerable at river crossings since floods can expose and rupture pipes, releasing oil that floats and coats floodplain vegetation. This study investigated the consequences of oil coatings on leaves of cottonwoods (riparian poplars), the predominant trees in floodplain woodlands around the Northern Hemisphere. The study compared conventional crude oil (CO) versus diluted bitumen (dilbit, DB), heavy oil originating from the Alberta oil sands; with petroleum jelly (PJ) as a reference. The treatments increased leaf surface temperatures (Tleaf) in narrowleaf and plains cottonwoods (Populus angustifolia, P. deltoides) and balsam poplars (P. balsamifera) (Control = 21.8°C, PJ = 23.7°C; CO = 26.2°C; DB = 28.1°C; Tair = 25°C). The leaf warming followed stomatal occlusion from the foliar coating, which would reduce transpiration and evaporative cooling, combined with increased solar warming with the darker oils. Tleaf varied across the three cottonwood species, with cooler, narrow, narrowleaf cottonwood leaves; intermediate plains cottonwood leaves; and warmer, darker, balsam poplar leaves (average Tleaf: narrowleaf = 23.8°C, plains = 24.3°C, and balsam = 26.7°C), with similar warming in each species following the different treatments. Across species and treatments, Tleaf was tightly correlated with foliar condition, which assessed turgor versus wilting of leaf blades and petioles, along with leaf necrosis and senescence (r2 = 0.980, narrowleaf; 0.998, plains; 0.852, balsam). This tight association indicates validity of both Tleaf and foliar condition as diagnostic measures. Crude oil and dilbit had similar foliar impacts, and for both, leaf abscission occurred within 2 to 3 weeks. Consequently, following an oil spill, remediation should commence quickly but extending vegetation removal beyond a few weeks would have limited benefit since the contaminated leaves would have abscised.
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Affiliation(s)
- Kayleigh G. Nielson
- Department of Biological Sciences, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Samuel G. Woodman
- Department of Biological Sciences, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Stewart B. Rood
- Department of Biological Sciences, University of Lethbridge, Lethbridge, Alberta, Canada
- * E-mail:
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14
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Ren F, Yan DH, Wu G, Sun X, Song X, Li R. Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of Marssonina brunnea. Front Microbiol 2020; 11:276. [PMID: 32210930 PMCID: PMC7076119 DOI: 10.3389/fmicb.2020.00276] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 02/06/2020] [Indexed: 11/13/2022] Open
Abstract
The knowledge on the host specificity of a pathogen underlying an interaction is becoming an urgent necessity for global warming. In this study, the gene expression profiles and the roles of effectors in host specificity were integrally characterized with two formae speciales, multigermtubi and monogermtubi, of a hemibiotrophic pathogen Marssonina brunnea when they were infecting respective susceptible poplar hosts. With a functional genome comparison referring to a de novo transcriptome of M. brunnea and Pathogen-Host Interaction database functional annotations, the multigermtubi strain showed abundant and significant differentially expressed unigenes (DEGs) (more than 40%) in colonizing the initial invasion stage and in the necrotrophic stage. The monogermtubi strain induced less than 10% of DEGs in the initial invasion stage but which abruptly increased to more than 80% DEGs in the necrotrophic stage. Both strains induced the least DEGs in the biotrophic stage compared to the initial invasion and necrotrophic stages. The orthologs of the effector genes Ecp6, PemG1, XEG1, ACE1, and Mg3LysM were exclusively induced by one of the two formae speciales depending on the infection stages. Some unigenes homologous to carbohydrate lytic enzyme genes, especially pectate lyases, were notably induced with multigermtubi forma specialis infection but not expressed in the monogermtubi forma specialis at an earlier infection stage. The extraordinary differences in the functional genome level between the two formae speciales of M. brunnea could be fundamental to exploring their host specificity determinant and evolution. This study also firstly provided the fungal transcriptome of the monogermtubi forma specialis for M. brunnea.
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Affiliation(s)
- Fei Ren
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
- Institute of Cereal & Oil Science and Technology, Academy of National Food and Strategic Reserves Administration, Beijing, China
| | - Dong-Hui Yan
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
| | - Guanghua Wu
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
| | - Xiaoming Sun
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
| | - Xiaoyu Song
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
| | - Ruhua Li
- Research Institute of Forest Ecology, Environment and Protection, Key Laboratory of Forest Protection Affiliated to State Forestry and Grassland Administration of China, Chinese Academy of Forestry, Beijing, China
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15
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Xi Z, Hopkinson C, Rood SB, Barnes C, Xu F, Pearce D, Jones E. A Lightweight Leddar Optical Fusion Scanning System (FSS) for Canopy Foliage Monitoring. SENSORS 2019; 19:s19183943. [PMID: 31547362 PMCID: PMC6767693 DOI: 10.3390/s19183943] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 09/10/2019] [Accepted: 09/10/2019] [Indexed: 11/16/2022]
Abstract
A growing need for sampling environmental spaces in high detail is driving the rapid development of non-destructive three-dimensional (3D) sensing technologies. LiDAR sensors, capable of precise 3D measurement at various scales from indoor to landscape, still lack affordable and portable products for broad-scale and multi-temporal monitoring. This study aims to configure a compact and low-cost 3D fusion scanning system (FSS) with a multi-segment Leddar (light emitting diode detection and ranging, LeddarTech), a monocular camera, and rotational robotics to recover hemispherical, colored point clouds. This includes an entire framework of calibration and fusion algorithms utilizing Leddar depth measurements and image parallax information. The FSS was applied to scan a cottonwood (Populus spp.) stand repeatedly during autumnal leaf drop. Results show that the calibration error based on bundle adjustment is between 1 and 3 pixels. The FSS scans exhibit a similar canopy volume profile to the benchmarking terrestrial laser scans, with an r2 between 0.5 and 0.7 in varying stages of leaf cover. The 3D point distribution information from FSS also provides a valuable correction factor for the leaf area index (LAI) estimation. The consistency of corrected LAI measurement demonstrates the practical value of deploying FSS for canopy foliage monitoring.
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Affiliation(s)
- Zhouxin Xi
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
| | | | - Stewart B Rood
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
| | - Celeste Barnes
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
| | - Fang Xu
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
| | - David Pearce
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
| | - Emily Jones
- Department of Geography, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
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16
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Feng Z, Shang B, Gao F, Calatayud V. Current ambient and elevated ozone effects on poplar: A global meta-analysis and response relationships. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 654:832-840. [PMID: 30453256 DOI: 10.1016/j.scitotenv.2018.11.179] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2018] [Revised: 11/06/2018] [Accepted: 11/12/2018] [Indexed: 05/14/2023]
Abstract
The effects of current and future elevated O3 concentrations (e[O3]) were investigated by a meta-analysis for poplar, a widely distributed genus in the Northern Hemisphere with global economic importance. Current [O3] has significantly reduced CO2 assimilation rate (Pn) by 33% and total biomass by 4% in comparison with low O3 level (charcoal-filtered air, CF). Relative to CF, an increase in future [O3] would further enhance the reduction in total biomass by 24%, plant height by 17% and plant leaf area by 19%. Isoprene emissions could decline by 34% under e[O3], with feedback implications in reducing the formation of secondary air pollutants including O3. Reduced stomatal conductance and lower foliar area might increase runoff and freshwater availability in O3 polluted areas. Higher cumulated O3 exposure over a threshold of 40 ppb (AOT40) induced larger reductions in Pn, total biomass and isoprene emission. Relationships of light-saturated photosynthesis rates (Asat), total biomass and chlorophyll content with AOT40 using a global dataset are provided. These relationships are expected to improve O3 risk assessment and also to support the inclusion of the effect of O3 in models addressing plantation productivity and carbon sink capacity.
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Affiliation(s)
- Zhaozhong Feng
- Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, School of Environmental Science and Technology, Nanjing University of Information Science & Technology, Nanjing 210044, China; State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Shuangqing Road 18, Haidian District, Beijing 100085, China.
| | - Bo Shang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Shuangqing Road 18, Haidian District, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Feng Gao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Shuangqing Road 18, Haidian District, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Vicent Calatayud
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Shuangqing Road 18, Haidian District, Beijing 100085, China; Fundación CEAM, c/Charles R. Darwin 14, Parque Tecnológico, 46980 Paterna, Valencia, Spain
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