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De Coninck L, Soto A, Wang L, De Wolf K, Smitz N, Deblauwe I, Mbigha Donfack KC, Müller R, Delang L, Matthijnssens J. Lack of abundant core virome in Culex mosquitoes from a temperate climate region despite a mosquito species-specific virome. mSystems 2024; 9:e0001224. [PMID: 38742876 DOI: 10.1128/msystems.00012-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 04/15/2024] [Indexed: 05/16/2024] Open
Abstract
In arthropod-associated microbial communities, insect-specific viruses (ISVs) are prevalent yet understudied due to limited infectivity outside their natural hosts. However, ISVs might play a crucial role in regulating mosquito populations and influencing arthropod-borne virus transmission. Some studies have indicated a core virome in mosquitoes consisting of mostly ISVs. Employing single mosquito metagenomics, we comprehensively profiled the virome of native and invasive mosquito species in Belgium. This approach allowed for accurate host species determination, prevalence assessment of viruses and Wolbachia, and the identification of novel viruses. Contrary to our expectations, no abundant core virome was observed in Culex mosquitoes from Belgium. In that regard, we caution against rigidly defining mosquito core viromes and encourage nuanced interpretations of other studies. Nonetheless, our study identified 45 viruses of which 28 were novel, enriching our understanding of the mosquito virome and ISVs. We showed that the mosquito virome in this study is species-specific and less dependent on the location where mosquitoes from the same species reside. In addition, because Wolbachia has previously been observed to influence arbovirus transmission, we report the prevalence of Wolbachia in Belgian mosquitoes and the detection of several Wolbachia mobile genetic elements. The observed prevalence ranged from 83% to 92% in members from the Culex pipiens complex.IMPORTANCECulex pipiens mosquitoes are important vectors for arboviruses like West Nile virus and Usutu virus. Virome studies on individual Culex pipiens, and on individual mosquitoes in general, have been lacking. To mitigate this, we sequenced the virome of 190 individual Culex and 8 individual Aedes japonicus mosquitoes. We report the lack of a core virome in these mosquitoes from Belgium and caution the interpretation of other studies in this light. The discovery of new viruses in this study will aid our comprehension of insect-specific viruses and the mosquito virome in general in relation to mosquito physiology and mosquito population dynamics.
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Affiliation(s)
- Lander De Coninck
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Division of Clinical and Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium
| | - Alina Soto
- KU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Laboratory of Virology and Chemotherapy, Mosquito Virology Team, Leuven, Belgium
| | - Lanjiao Wang
- KU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Laboratory of Virology and Chemotherapy, Mosquito Virology Team, Leuven, Belgium
| | - Katrien De Wolf
- Department Biomedical Sciences, The Unit of Entomology, Institute of Tropical Medicine, Antwerp, Belgium
- Department of Biology, Terrestrial Ecology Unit, Ghent University, Ghent, Belgium
| | - Nathalie Smitz
- Department of Biology, Royal Museum for Central Africa (Barcoding Facility for Organisms and Tissues of Policy Concern), Tervuren, Belgium
| | - Isra Deblauwe
- Department Biomedical Sciences, The Unit of Entomology, Institute of Tropical Medicine, Antwerp, Belgium
| | - Karelle Celes Mbigha Donfack
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Division of Clinical and Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium
| | - Ruth Müller
- Department Biomedical Sciences, The Unit of Entomology, Institute of Tropical Medicine, Antwerp, Belgium
| | - Leen Delang
- KU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Laboratory of Virology and Chemotherapy, Mosquito Virology Team, Leuven, Belgium
| | - Jelle Matthijnssens
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Division of Clinical and Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium
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Linthout C, Martins AD, de Wit M, Delecroix C, Abbo SR, Pijlman GP, Koenraadt CJM. The potential role of the Asian bush mosquito Aedes japonicus as spillover vector for West Nile virus in the Netherlands. Parasit Vectors 2024; 17:262. [PMID: 38886805 PMCID: PMC11181672 DOI: 10.1186/s13071-024-06279-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 04/13/2024] [Indexed: 06/20/2024] Open
Abstract
BACKGROUND In recent years the Asian bush mosquito Aedes japonicus has invaded Europe, including the Netherlands. This species is a known vector for a range of arboviruses, possibly including West Nile virus (WNV). As WNV emerged in the Netherlands in 2020, it is important to investigate the vectorial capacity of mosquito species present in the Netherlands to estimate the risk of future outbreaks and further spread of the virus. Therefore, this study evaluates the potential role of Ae. japonicus in WNV transmission and spillover from birds to dead-end hosts in the Netherlands. METHODS We conducted human landing collections in allotment gardens (Lelystad, the Netherlands) in June, August and September 2021 to study the diurnal and seasonal host-seeking behaviour of Ae. japonicus. Furthermore, their host preference in relation to birds using live chicken-baited traps was investigated. Vector competence of field-collected Ae. japonicus mosquitoes for two isolates of WNV at two different temperatures was determined. Based on the data generated from these studies, we developed a Susceptible-Exposed-Infectious-Recovered (SEIR) model to calculate the risk of WNV spillover from birds to humans via Ae. japonicus, under the condition that the virus is introduced and circulates in an enzootic cycle in a given area. RESULTS Our results show that Ae. japonicus mosquitoes are actively host seeking throughout the day, with peaks in activity in the morning and evening. Their abundance in August was higher than in June and September. For the host-preference experiment, we documented a small number of mosquitoes feeding on birds: only six blood-fed females were caught over 4 full days of sampling. Finally, our vector competence experiments with Ae. japonicus compared to its natural vector Culex pipiens showed a higher infection and transmission rate when infected with a local, Dutch, WNV isolate compared to a Greek isolate of the virus. Interestingly, we also found a small number of infected Cx. pipiens males with virus-positive leg and saliva samples. CONCLUSIONS Combining the field and laboratory derived data, our model predicts that Ae. japonicus could act as a spillover vector for WNV and could be responsible for a high initial invasion risk of WNV when present in large numbers.
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Affiliation(s)
- Charlotte Linthout
- Department of Entomology, Wageningen University & Research, Wageningen, the Netherlands.
| | - Afonso Dimas Martins
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands
| | - Mariken de Wit
- Quantitative Veterinary Epidemiology, Wageningen University & Research, Wageningen, the Netherlands
| | - Clara Delecroix
- Quantitative Veterinary Epidemiology, Wageningen University & Research, Wageningen, the Netherlands
- Department of Environmental Sciences, Wageningen University & Research, Wageningen, the Netherlands
| | - Sandra R Abbo
- Department of Virology, Wageningen University & Research, Wageningen, the Netherlands
| | - Gorben P Pijlman
- Department of Virology, Wageningen University & Research, Wageningen, the Netherlands
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Polycarpo CR, Walter-Nuno AB, Azevedo-Reis L, Paiva-Silva GO. The vector-symbiont affair: a relationship as (im)perfect as it can be. CURRENT OPINION IN INSECT SCIENCE 2024; 63:101203. [PMID: 38705385 DOI: 10.1016/j.cois.2024.101203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 04/24/2024] [Accepted: 04/25/2024] [Indexed: 05/07/2024]
Abstract
Vector-borne diseases are globally prevalent and represent a major socioeconomic problem worldwide. Blood-sucking arthropods transmit most pathogenic agents that cause these human infections. The pathogens transmission to their vertebrate hosts depends on how efficiently they infect their vector, which is particularly impacted by the microbiota residing in the intestinal lumen, as well as its cells or internal organs such as ovaries. The balance between costs and benefits provided by these interactions ultimately determines the outcome of the relationship. Here, we will explore aspects concerning the nature of microbe-vector interactions, including the adaptive traits required for their establishment, the varied outcomes of symbiotic interactions, as well as the factors influencing the transition of these relationships across a continuum from parasitism to mutualism.
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Affiliation(s)
- Carla R Polycarpo
- Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil; Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Rio de Janeiro 21941-902, Brazil
| | - Ana B Walter-Nuno
- Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil; Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Rio de Janeiro 21941-902, Brazil
| | - Leonan Azevedo-Reis
- Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil; Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Rio de Janeiro 21941-902, Brazil
| | - Gabriela O Paiva-Silva
- Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil; Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Rio de Janeiro 21941-902, Brazil.
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Gupta P, Hiller A, Chowdhury J, Lim D, Lim DY, Saeij JPJ, Babaian A, Rodriguez F, Pereira L, Morales-Tapia A. A parasite odyssey: An RNA virus concealed in Toxoplasma gondii. Virus Evol 2024; 10:veae040. [PMID: 38817668 PMCID: PMC11137675 DOI: 10.1093/ve/veae040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 03/05/2024] [Accepted: 05/10/2024] [Indexed: 06/01/2024] Open
Abstract
We are entering a 'Platinum Age of Virus Discovery', an era marked by exponential growth in the discovery of virus biodiversity, and driven by advances in metagenomics and computational analysis. In the ecosystem of a human (or any animal) there are more species of viruses than simply those directly infecting the animal cells. Viruses can infect all organisms constituting the microbiome, including bacteria, fungi, and unicellular parasites. Thus the complexity of possible interactions between host, microbe, and viruses is unfathomable. To understand this interaction network we must employ computationally assisted virology as a means of analyzing and interpreting the millions of available samples to make inferences about the ways in which viruses may intersect human health. From a computational viral screen of human neuronal datasets, we identified a novel narnavirus Apocryptovirus odysseus (Ao) which likely infects the neurotropic parasite Toxoplasma gondii. Previously, several parasitic protozoan viruses (PPVs) have been mechanistically established as triggers of host innate responses, and here we present in silico evidence that Ao is a plausible pro-inflammatory factor in human and mouse cells infected by T. gondii. T. gondii infects billions of people worldwide, yet the prognosis of toxoplasmosis disease is highly variable, and PPVs like Ao could function as a hitherto undescribed hypervirulence factor. In a broader screen of over 7.6 million samples, we explored phylogenetically proximal viruses to Ao and discovered nineteen Apocryptovirus species, all found in libraries annotated as vertebrate transcriptome or metatranscriptomes. While samples containing this genus of narnaviruses are derived from sheep, goat, bat, rabbit, chicken, and pigeon samples, the presence of virus is strongly predictive of parasitic Apicomplexa nucleic acid co-occurrence, supporting the fact that Apocryptovirus is a genus of parasite-infecting viruses. This is a computational proof-of-concept study in which we rapidly analyze millions of datasets from which we distilled a mechanistically, ecologically, and phylogenetically refined hypothesis. We predict that this highly diverged Ao RNA virus is biologically a T. gondii infection, and that Ao, and other viruses like it, will modulate this disease which afflicts billions worldwide.
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Affiliation(s)
- Purav Gupta
- The Woodlands Secondary School, 3225 Erindale Station Rd,Mississauga, ON L5C 1Y5, Canada
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Aiden Hiller
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Jawad Chowdhury
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Declan Lim
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Dillon Yee Lim
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
- Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Sherrington Road, Oxford, Oxfordshire, OX1 3PT, UK
| | - Jeroen P J Saeij
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
- Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, 1 Shields Ave, Davis, CA 95616, USA
| | - Artem Babaian
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Felipe Rodriguez
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
- Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, 1 Shields Ave, Davis, CA 95616, USA
| | - Luke Pereira
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
| | - Alejandro Morales-Tapia
- Department of Molecular Genetics, University of Toronto, 1 King’s College Circle, Toronto, ON M5S 1A8, Canada
- The Donnelly Centre for Cellular + Biomolecular Research, University of Toronto, 160 College St, Toronto, ON M5S 3E1, Canada
- The Woodlands Secondary School, 3225 Erindale Station Rd, Mississauga, ON L5C 1Y5, Canada
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Divekar G, Colmant AMG, Furlong MJ, Etebari K. Transcriptome Analysis Reveals a Diverse Range of Novel Viruses in Australian Sugarcane Soldier Fly ( Inopus flavus) Larvae. Viruses 2024; 16:516. [PMID: 38675859 PMCID: PMC11054854 DOI: 10.3390/v16040516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 03/25/2024] [Accepted: 03/26/2024] [Indexed: 04/28/2024] Open
Abstract
In Australia, Soldier flies (Inopus spp.) are economically significant pests of sugarcane that currently lack a viable management strategy. Despite various research efforts, the mechanisms underlying the damage caused by soldier fly larvae remain poorly understood. Our study aims to explore whether this damage is associated with the transmission of plant viruses during larval feeding. We also explore the larval transcriptome to identify any entomopathogenic viruses with the potential to be used as biocontrol agents in future pest management programs. Seven novel virus sequences are identified and characterised using de novo assembly of RNA-Seq data obtained from salivary glands of larvae. The novel virus sequences belong to different virus families and are tentatively named SF-associated anphevirus (SFaAV), SF-associated orthomyxo-like virus (SFaOV), SF-associated narna-like virus (SFaNV), SF-associated partiti-like virus (SFaPV), SF-associated toti-like virus (SFaTV-1 and SFaTV-2) and SF-associated densovirus (SFaDV). These newly identified viruses are more likely insect-associated viruses, as phylogenetic analyses show that they cluster with other insect-specific viruses. Small RNA analysis indicates prominent peaks at both 21 nt and 26-29 nt, suggesting the activation of host siRNA and piwiRNA pathways. Our study helps to improve understanding of the virome of soldier flies and could identify insect viruses for deployment in novel pest management strategies.
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Affiliation(s)
- Gayatri Divekar
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton 4343, Australia
| | - Agathe M. G. Colmant
- Unité des Virus Émergents (UVE: Aix-Marseille Univ, Università di Corsica, IRD 190, Inserm 1207, IRBA), 13005 Marseille, France
| | - Michael J. Furlong
- School of the Environment, The University of Queensland, Brisbane 4072, Australia
| | - Kayvan Etebari
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton 4343, Australia
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