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Mahmood MA, Naqvi RZ, Amin I, Mansoor S. Salicylic acid-driven innate antiviral immunity in plants. TRENDS IN PLANT SCIENCE 2024; 29:715-717. [PMID: 38331684 DOI: 10.1016/j.tplants.2024.01.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/23/2024] [Accepted: 01/30/2024] [Indexed: 02/10/2024]
Abstract
Pathogenic viruses are a constant threat to all organisms, including plants. However, in plants, a small group of cells (stem cells) protect themselves from viral invasion. Recently, Incarbone et al. uncovered a novel salicylic acid (SA) and RNAi mechanism of stem cell resistance, broadening our understanding of RNAi-mediated antiviral plant immunity.
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Affiliation(s)
- Muhammad Arslan Mahmood
- Plant Sciences Division, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia.
| | - Rubab Zahra Naqvi
- National Institute for Biotechnology and Genetic Engineering (NIBGE) Constituent College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faislabad 38000, Pakistan
| | - Imran Amin
- National Institute for Biotechnology and Genetic Engineering (NIBGE) Constituent College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faislabad 38000, Pakistan
| | - Shahid Mansoor
- Jamil-ur-Rehman Center for Genome Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 74000, Pakistan
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2
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Khalid A, Zhang X, Ji H, Yasir M, Farooq T, Dai X, Li F. Large Artificial microRNA Cluster Genes Confer Effective Resistance against Multiple Tomato Yellow Leaf Curl Viruses in Transgenic Tomato. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112179. [PMID: 37299158 DOI: 10.3390/plants12112179] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 05/22/2023] [Accepted: 05/29/2023] [Indexed: 06/12/2023]
Abstract
Tomato yellow leaf curl disease (TYLCD) has become the key limiting factor for the production of tomato in many areas because of the continuous infection and recombination of several tomato yellow leaf curl virus (TYLCV)-like species (TYLCLV) which produce novel and destructive viruses. Artificial microRNA (AMIR) is a recent and effective technology used to create viral resistance in major crops. This study applies AMIR technology in two ways, i.e., amiRNA in introns (AMINs) and amiRNA in exons (AMIEs), to express 14 amiRNAs targeting conserved regions in seven TYLCLV genes and their satellite DNA. The resulting pAMIN14 and pAMIE14 vectors can encode large AMIR clusters and their function in silencing reporter genes was validated with transient assays and stable transgenic N. tabacum plants. To assess the efficacy of conferring resistance against TYLCLV, pAMIE14 and pAMIN14 were transformed into tomato cultivar A57 and the resulting transgenic tomato plants were evaluated for their level of resistance to mixed TYLCLV infection. The results suggest that pAMIN14 transgenic lines have a more effective resistance than pAMIE14 transgenic lines, reaching a resistance level comparable to plants carrying the TY1 resistance gene.
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Affiliation(s)
- Annum Khalid
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Xi Zhang
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Huaijin Ji
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Muhammad Yasir
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Tariq Farooq
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Xinyi Dai
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Feng Li
- National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
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Tran TTY, Cheng HW, Nguyen VH, Yeh SD. Modification of the Helper Component Proteinase of Papaya Ringspot Virus Vietnam Isolate to Generate Attenuated Mutants for Disease Management by Cross Protection. PHYTOPATHOLOGY 2023; 113:334-344. [PMID: 36129763 DOI: 10.1094/phyto-05-22-0168-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Papaya (Carica papaya) production is seriously limited by papaya ringspot virus (PRSV) worldwide, including in Vietnam. Control of PRSV by cross protection is dependent on the availability of effective mild strains. Here, an infectious cDNA clone was constructed from PRSV isolate TG5 from South Vietnam. Site-directed mutagenesis with point mutations on the essential motifs of the helper component proteinase (HC-Pro) was performed, with or without deleting five amino acids (d5) from its N-terminal region. Mutants TG-d5, TG-d5I7, and TG-d5L206 containing d5, d5 + F7I, and d5 + F206L, respectively, induced mild mottling followed by symptomless recovery on papaya and infected Chenopodium quinoa without lesion formation. Each mutant accumulated in papaya at reduced levels with a zigzag pattern and was stable beyond six monthly passages. The cross-protection effectiveness of the three mutants in papaya against TG5 was investigated, each with 60 plants from three independent trials. The results showed that each mutant provided complete protection (100%) against TG5, 1 month after the challenge inoculation, as verified by the lack of severe symptoms and lack of local lesions in C. quinoa. Further tests revealed that TG-d5I7 also confers high levels of protection against other severe PRSV isolates from South Vietnam, including isolates DN (97%) and ST2 (50%). However, TG-d5I7 is ineffective or less effective (0 to 33%) against seven other severe PRSV strains from different geographic origins, including the isolate HN from North Vietnam. Our results indicate that the protection by the three mutants is highly strain-specific and suitable for the control of PRSV in South Vietnam.
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Affiliation(s)
- Thi-Thu-Yen Tran
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Southern Horticultural Research Institute, Tiengiang, Vietnam
| | - Hao-Wen Cheng
- Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Van-Hoa Nguyen
- Southern Horticultural Research Institute, Tiengiang, Vietnam
| | - Shyi-Dong Yeh
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Vietnam Overseas Agricultural Science and Technology Innovation Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
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4
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Tran TTY, Lin TT, Chang CP, Chen CH, Nguyen VH, Yeh SD. Generation of Mild Recombinants of Papaya Ringspot Virus to Minimize the Problem of Strain-Specific Cross-Protection. PHYTOPATHOLOGY 2022; 112:708-719. [PMID: 34384243 DOI: 10.1094/phyto-06-21-0272-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Papaya ringspot virus (PRSV) causes severe damage to papaya (Carica papaya L.) and is the primary limiting factor for papaya production worldwide. A nitrous acid-induced mild strain, PRSV HA 5-1, derived from Hawaii strain HA, has been applied to control PRSV by cross-protection for decades. However, the problem of strain-specific protection hampers its application in Taiwan and other geographic regions outside Hawaii. Here, sequence comparison of the genomic sequence of HA 5-1 with that of HA revealed 69 nucleotide changes, resulting in 31 aa changes, of which 16 aa are structurally different. The multiple mutations of HA 5-1 are considered to result from nitrous acid induction because 86% of nucleotide changes are transition mutations. The stable HA 5-1 was used as a backbone to generate recombinants carrying individual 3' fragments of Vietnam severe strain TG5, including NIa, NIb, and CP3' regions, individually or in combination. Our results indicated that the best heterologous fragment for the recombinant is the region of CP3', with which symptom attenuation of the recombinant is like that of HA 5-1. This mild recombinant HA51/TG5-CP3' retained high levels of protection against the homologous HA in papaya plants and significantly increased the protection against the heterologous TG-5. Similarly, HA 5-1 recombinants carrying individual CP3' fragments from Thailand SMK, Taiwan YK, and Vietnam ST2 severe strains also significantly increase protection against the corresponding heterologous strains in papaya plants. Thus, our recombinant approach for mild strain generation is a fast and effective way to minimize the problem of strain-specific protection.
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Affiliation(s)
- Thi-Thu-Yen Tran
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Southern Horticultural Research Institute, TienGiang, Vietnam
| | - Tzu-Tung Lin
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Chung-Ping Chang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Chun-Hung Chen
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Van-Hoa Nguyen
- Southern Horticultural Research Institute, TienGiang, Vietnam
| | - Shyi-Dong Yeh
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Vietnam Overseas Agricultural Science and Technology Innovation Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
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5
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Tuo D, Zhou P, Zhao G, Yan P, Tan D, Li X, Shen W. A Double Mutation in the Conserved Motifs of the Helper Component Protease of Papaya Leaf Distortion Mosaic Virus for the Generation of a Cross-Protective Attenuated Strain. PHYTOPATHOLOGY 2020; 110:187-193. [PMID: 31516080 DOI: 10.1094/phyto-09-19-0328-r] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Potyviral helper component protease (HC-Pro), as a major determinant of symptom expression in susceptible plants, is a likely target candidate in the production of attenuated strains for cross-protection. In this study, single or double mutations of Lys (K) to Glu (E) in the Lys-Ile-Thr-Cys motif and Arg (R) to Ile (I) in the Phe-Arg-Asn-Lys motif of the HC-Pro from the severe papaya leaf distortion mosaic virus strain DF (PLDMV-DF) reduced symptom expression and virus accumulation in infected papaya (Carica papaya) plants. The papaya plants infected with the attenuated double mutant of PLDMV-EI presented as symptomless. PLDMV-EI provided effective protection against PLDMV-DF infection in three papaya cultivars and had no effect on plant growth and development. Our result showed that PLDMV-EI is a promising mild strain for the practical use of cross-protection in the field.
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Affiliation(s)
- Decai Tuo
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Hainan Key Laboratory of Tropical Microbe Resources, Haikou 571101, China
| | - Peng Zhou
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Hainan Key Laboratory of Tropical Microbe Resources, Haikou 571101, China
| | - Guangyuan Zhao
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China
| | - Pu Yan
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Hainan Key Laboratory of Tropical Microbe Resources, Haikou 571101, China
| | - Dong Tan
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
| | - Xiaoying Li
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Hainan Key Laboratory of Tropical Microbe Resources, Haikou 571101, China
| | - Wentao Shen
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture & Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
- Hainan Key Laboratory of Tropical Microbe Resources, Haikou 571101, China
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6
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Kim HB, Lee Y, Kim CG. Research status of the development of genetically modified papaya (Carica papaya L.) and its biosafety assessment. ACTA ACUST UNITED AC 2018. [DOI: 10.5010/jpb.2018.45.3.171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Ho Bang Kim
- Life Sciences Research Institute, Biomedic Co., Ltd., Bucheon 14548, Korea
| | - Yi Lee
- Department of Industrial Plant Science and Technology, Chungbuk National University, Cheongju 28644, Korea
| | - Chang-Gi Kim
- Bio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Korea
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7
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Wu Z, Mo C, Zhang S, Li H. Characterization of Papaya ringspot virus isolates infecting transgenic papaya 'Huanong No.1' in South China. Sci Rep 2018; 8:8206. [PMID: 29844514 PMCID: PMC5974079 DOI: 10.1038/s41598-018-26596-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 05/15/2018] [Indexed: 11/09/2022] Open
Abstract
In 2006, the release and cultivation of the genetically modified papaya cultivar 'Huanong No.1' successfully controlled the destructive papaya ringspot disease caused by Papaya ringspot virus (PRSV) in South China. However, some transgenic papaya plants from Guangdong and Hainan are found infected by PRSV. In this study, Field investigation was carried out and susceptible transgenic papaya samples were collected during 2012-2016. Twenty representative isolates were artificially inoculated into Cucurbita pepo and commercialised 'Huanong No.1' papaya, and results indicated that the plants showed obvious disease symptoms. Phylogenetic analysis of CP genes of 120 PRSV-infected isolates showed that PRSV can be divided into three groups. Isolates from Guangdong and Hainan belong to Group III, which is further divided into two subgroups. The isolates collected in this study have greatly diverged from the previously reported dominant strains Ys, Vb and Sm in South China, indicating that they belong to a new lineage. Further analysis showed a highly genetic differentiation between isolates, and 27.1% of the isolates were identified as recombinants on the basis of CP nucleotide sequences. These results indicate that the genetic variation of PRSV and the formation of the new virus lineage may explain the loss of transgenic papaya resistance in South China.
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Affiliation(s)
- Zilin Wu
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Cuiping Mo
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Shuguang Zhang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Huaping Li
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China.
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Jia R, Zhao H, Huang J, Kong H, Zhang Y, Guo J, Huang Q, Guo Y, Wei Q, Zuo J, Zhu YJ, Peng M, Guo A. Use of RNAi technology to develop a PRSV-resistant transgenic papaya. Sci Rep 2017; 7:12636. [PMID: 28974762 PMCID: PMC5626737 DOI: 10.1038/s41598-017-13049-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 09/14/2017] [Indexed: 12/13/2022] Open
Abstract
Papaya ringspot virus (PRSV) seriously limits papaya (Carica papaya L.) production in tropical and subtropical areas throughout the world. Coat protein (CP)- transgenic papaya lines resistant to PRSV isolates in the sequence-homology-dependent manner have been developed in the U.S.A. and Taiwan. A previous investigation revealed that genetic divergence among Hainan isolates of PRSV has allowed the virus to overcome the CP-mediated transgenic resistance. In this study, we designed a comprehensive RNAi strategy targeting the conserved domain of the PRSV CP gene to develop a broader-spectrum transgenic resistance to the Hainan PRSV isolates. We used an optimized particle-bombardment transformation system to produce RNAi-CP-transgenic papaya lines. Southern blot analysis and Droplet Digital PCR revealed that line 474 contained a single transgene insert. Challenging this line with different viruses (PRSV I, II and III subgroup) under greenhouse conditions validated the transgenic resistance of line 474 to the Hainan isolates. Northern blot analysis detected the siRNAs products in virus-free transgenic papaya tissue culture seedlings. The siRNAs also accumulated in PRSV infected transgenic papaya lines. Our results indicated that this transgenic papaya line has a useful application against PRSV in the major growing area of Hainan, China.
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Affiliation(s)
- Ruizong Jia
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
- Hawaii Agriculture Research Center, 96797, Waipahu, HI, USA
| | - Hui Zhao
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Jing Huang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
- School of Basic and Life Science, Hainan Medical University, Haikou, 571199, Hainan, China
| | - Hua Kong
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Yuliang Zhang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Jingyuan Guo
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Qixing Huang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Yunling Guo
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Qing Wei
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
- Institute of Banana and Plantain, Haikou Substation, Chinese Academy of Tropical Agriculture Sciences, 570102, Haikou, Hainan, China
| | - Jiao Zuo
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China
| | - Yun J Zhu
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China.
- Hawaii Agriculture Research Center, 96797, Waipahu, HI, USA.
| | - Ming Peng
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China.
| | - Anping Guo
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, 571101, Haikou, Hainan, China.
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Lindbo JA, Falk BW. The Impact of "Coat Protein-Mediated Virus Resistance" in Applied Plant Pathology and Basic Research. PHYTOPATHOLOGY 2017; 107:624-634. [PMID: 28409526 DOI: 10.1094/phyto-12-16-0442-rvw] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Worldwide, plant viruses cause serious reductions in marketable crop yield and in some cases even plant death. In most cases, the most effective way to control virus diseases is through genetically controlled resistance. However, developing virus-resistant (VR) crops through traditional breeding can take many years, and in some cases is not even possible. Because of this, the demonstration of the first VR transgenic plants in 1985 generated much attention. This seminal report served as an inflection point for research in both basic and applied plant pathology, the results of which have dramatically changed both basic research and in a few cases, commercial crop production. The typical review article on this topic has focused on only basic or only applied research results stemming from this seminal discovery. This can make it difficult for the reader to appreciate the full impact of research on transgenic virus resistance, and the contributions from fundamental research that led to translational applications of this technology. In this review, we take a global view of this topic highlighting the significant changes to both basic and applied plant pathology research and commercial food production that have accumulated in the last 30 plus years. We present these milestones in the historical context of some of the scientific, economic, and environmental drivers for developing specific VR crops. The intent of this review is to provide a single document that adequately records the significant accomplishments of researchers in both basic and applied plant pathology research on this topic and how they relate to each other. We hope this review therefore serves as both an instructional tool for students new to the topic, as well as a source of conversation and discussion for how the technology of engineered virus resistance could be applied in the future.
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Affiliation(s)
- John A Lindbo
- First author: HM Clause, 28605 County Road 104, Davis, CA 95618; and second author: Department of Plant Pathology, University of California, Davis 95616
| | - Bryce W Falk
- First author: HM Clause, 28605 County Road 104, Davis, CA 95618; and second author: Department of Plant Pathology, University of California, Davis 95616
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Khalid A, Zhang Q, Yasir M, Li F. Small RNA Based Genetic Engineering for Plant Viral Resistance: Application in Crop Protection. Front Microbiol 2017; 8:43. [PMID: 28167936 PMCID: PMC5253543 DOI: 10.3389/fmicb.2017.00043] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Accepted: 01/06/2017] [Indexed: 11/13/2022] Open
Abstract
Small RNAs regulate a large set of gene expression in all plants and constitute a natural immunity against viruses. Small RNA based genetic engineering (SRGE) technology had been explored for crop protection against viruses for nearly 30 years. Viral resistance has been developed in diverse crops with SRGE technology and a few viral resistant crops have been approved for commercial release. In this review we summarized the efforts generating viral resistance with SRGE in different crops, analyzed the evolution of the technology, its efficacy in different crops for different viruses and its application status in different crops. The challenge and potential solution for application of SRGE in crop protection are also discussed.
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Affiliation(s)
| | | | | | - Feng Li
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China
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Tarora K, Shudo A, Kawano S, Yasuda K, Ueno H, Matsumura H, Urasaki N. Development of plants resistant to Papaya leaf distortion mosaic virus by intergeneric hybridization between Carica papaya and Vasconcellea cundinamarcensis. BREEDING SCIENCE 2016; 66:734-741. [PMID: 28163589 PMCID: PMC5282761 DOI: 10.1270/jsbbs.16107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Accepted: 09/06/2016] [Indexed: 05/06/2023]
Abstract
In this study, we confirmed that Vasconcellea cundinamarcensis resists Papaya leaf distortion mosaic virus (PLDMV), and used it to produce intergeneric hybrids with Carica papaya. From the cross between C. papaya and V. cundinamarcensis, we obtained 147 seeds with embryos. Though C. papaya is a monoembryonic plant, multiple embryos were observed in all 147 seeds. We produced 218 plants from 28 seeds by means of embryo-rescue culture. All plants had pubescence on their petioles and stems characteristic of V. cundinamarcensis. Flow cytometry and PCR of 28 plants confirmed they were intergeneric hybrids. To evaluate virus resistance, mechanical inoculation of PLDMV was carried out. The test showed that 41 of 134 intergeneric hybrid plants showed no symptoms and were resistant. The remaining 93 hybrids showed necrotic lesions on the younger leaves than the inoculated leaves. In most of the 93 hybrids, the necrotic lesions enclosed the virus and prevented further spread. These results suggest that the intergeneric hybrids will be valuable material for PLDMV-resistant papaya breeding.
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Affiliation(s)
- Kazuhiko Tarora
- Okinawa Prefectural Agricultural Research Center, 820 Makabe, Itoman, Okinawa 901-0336, Japan; Department of Bioscience and Textile Technology, Shinshu University, 3-15-1 Tokida, Ueda, Nagano 386-8567, Japan
| | - Ayano Shudo
- Okinawa Prefectural Agricultural Research Center , 820 Makabe, Itoman, Okinawa 901-0336 , Japan
| | - Shinji Kawano
- Department of Agriculture, Forestry and Fisheries, Yaeyama Agriculture, Forestry and Fisheries Promotion Center , 438-1 Maezato, Ishigaki, Okinawa 907-002 , Japan
| | - Keiji Yasuda
- Okinawa Prefectural Forest Resources Research Center , 4605-5 Nago, Nago, Okinawa 905-0012 , Japan
| | - Hiroki Ueno
- Department of Bioscience and Textile Technology, Shinshu University, 3-15-1 Tokida, Ueda, Nagano 386-8567, Japan; Institute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Anno, Tsu, Mie 514-2392, Japan
| | - Hideo Matsumura
- Gene Research Center, Shinshu University , 3-15-1 Tokida, Ueda, Nagano 386-8567 , Japan
| | - Naoya Urasaki
- Okinawa Prefectural Agricultural Research Center , 820 Makabe, Itoman, Okinawa 901-0336 , Japan
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Zhao H, Jia RZ, Zhang YL, Zhu YJ, Zeng HC, Kong H, McCafferty H, Guo AP, Peng M. Geographical and Genetic Divergence Among Papaya ringspot virus Populations Within Hainan Province, China. PHYTOPATHOLOGY 2016; 106:937-944. [PMID: 27070425 DOI: 10.1094/phyto-05-15-0111-r] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Papaya ringspot virus (PRSV) severely affects the global papaya industry. Transgenic papaya has been proven to have effective resistance to PRSV isolates from Hawaii, Thailand, Taiwan, and other countries. However, those transgenic cultivars failed to show resistance to Hainan Island isolates. Some 76 PRSV samples, representative of all traditional papaya planting areas across five cities (Wen Chang, n = 13; Cheng Mai, n = 14; Chang Jiang, n = 11; Le Dong, n = 25; and San Ya, n = 13) within Hainan Province, were investigated. Results revealed three genetic diversity groups (Hainan I, II, and III) that correlated with geographical distribution. Frequent mutations among PRSV isolates from Hainan were also observed. The high genetic divergence in PRSV isolates from Hainan is likely to be the cause of the failure of genetically modified papaya that targets sequence-specific virus.
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Affiliation(s)
- Hui Zhao
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Rui Zong Jia
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Yu-Liang Zhang
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Yun Judy Zhu
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Hui-Cai Zeng
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Hua Kong
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Heather McCafferty
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - An-Ping Guo
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
| | - Ming Peng
- First author: College of Agriculture, Hainan University, Haikou, Hainan, China 570228; first, second, third, fourth, fifth, sixth, eighth, and ninth authors: Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, P.R. China, and Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, Hainan, China 571101; and second, fourth, and seventh authors: Hawaii Agriculture Research Center, Waipahu 96797
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13
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Prins TW, Scholtens IMJ, Bak AW, van Dijk JP, Voorhuijzen MM, Laurensse EJ, Kok EJ. A case study to determine the geographical origin of unknown GM papaya in routine food sample analysis, followed by identification of papaya events 16-0-1 and 18-2-4. Food Chem 2016; 213:536-544. [PMID: 27451215 DOI: 10.1016/j.foodchem.2016.07.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Revised: 02/29/2016] [Accepted: 07/04/2016] [Indexed: 10/21/2022]
Abstract
During routine monitoring for GMOs in food in the Netherlands, papaya-containing food supplements were found positive for the genetically modified (GM) elements P-35S and T-nos. The goal of this study was to identify the unknown and EU unauthorised GM papaya event(s). A screening strategy was applied using additional GM screening elements including a newly developed PRSV coat protein PCR. The detected PRSV coat protein PCR product was sequenced and the nucleotide sequence showed identity to PRSV YK strains indigenous to China and Taiwan. The GM events 16-0-1 and 18-2-4 could be identified by amplifying and sequencing events-specific sequences. Further analyses showed that both papaya event 16-0-1 and event 18-2-4 were transformed with the same construct. For use in routine analysis, derived TaqMan qPCR methods for events 16-0-1 and 18-2-4 were developed. Event 16-0-1 was detected in all samples tested whereas event 18-2-4 was detected in one sample. This study presents a strategy for combining information from different sources (literature, patent databases) and novel sequence data to identify unknown GM papaya events.
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Affiliation(s)
- Theo W Prins
- RIKILT Wageningen UR, Institute of Food Safety, Akkermaalsbos 2, 6708 WB Wageningen, Netherlands.
| | - Ingrid M J Scholtens
- RIKILT Wageningen UR, Institute of Food Safety, Akkermaalsbos 2, 6708 WB Wageningen, Netherlands.
| | - Arno W Bak
- Netherlands Food and Consumer Product Safety Authority (NVWA), Akkermaalsbos 4, 6708 WB Wageningen, Netherlands.
| | - Jeroen P van Dijk
- RIKILT Wageningen UR, Institute of Food Safety, Akkermaalsbos 2, 6708 WB Wageningen, Netherlands.
| | - Marleen M Voorhuijzen
- RIKILT Wageningen UR, Institute of Food Safety, Akkermaalsbos 2, 6708 WB Wageningen, Netherlands.
| | - Emile J Laurensse
- Netherlands Food and Consumer Product Safety Authority (NVWA), Catharijnesingel 59, 3511GG Utrecht, Netherlands.
| | - Esther J Kok
- RIKILT Wageningen UR, Institute of Food Safety, Akkermaalsbos 2, 6708 WB Wageningen, Netherlands.
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15
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Tuo D, Shen W, Yan P, Li X, Zhou P. Rapid Construction of Stable Infectious Full-Length cDNA Clone of Papaya Leaf Distortion Mosaic Virus Using In-Fusion Cloning. Viruses 2015; 7:6241-50. [PMID: 26633465 PMCID: PMC4690859 DOI: 10.3390/v7122935] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Revised: 11/18/2015] [Accepted: 11/19/2015] [Indexed: 12/27/2022] Open
Abstract
Papaya leaf distortion mosaic virus (PLDMV) is becoming a threat to papaya and transgenic papaya resistant to the related pathogen, papaya ringspot virus (PRSV). The generation of infectious viral clones is an essential step for reverse-genetics studies of viral gene function and cross-protection. In this study, a sequence- and ligation-independent cloning system, the In-Fusion® Cloning Kit (Clontech, Mountain View, CA, USA), was used to construct intron-less or intron-containing full-length cDNA clones of the isolate PLDMV-DF, with the simultaneous scarless assembly of multiple viral and intron fragments into a plasmid vector in a single reaction. The intron-containing full-length cDNA clone of PLDMV-DF was stably propagated in Escherichia coli.In vitro intron-containing transcripts were processed and spliced into biologically active intron-less transcripts following mechanical inoculation and then initiated systemic infections in Carica papaya L. seedlings, which developed similar symptoms to those caused by the wild-type virus. However, no infectivity was detected when the plants were inoculated with RNA transcripts from the intron-less construct because the instability of the viral cDNA clone in bacterial cells caused a non-sense or deletion mutation of the genomic sequence of PLDMV-DF. To our knowledge, this is the first report of the construction of an infectious full-length cDNA clone of PLDMV and the splicing of intron-containing transcripts following mechanical inoculation. In-Fusion cloning shortens the construction time from months to days. Therefore, it is a faster, more flexible, and more efficient method than the traditional multistep restriction enzyme-mediated subcloning procedure.
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Affiliation(s)
- Decai Tuo
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
| | - Wentao Shen
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
| | - Pu Yan
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
| | - Xiaoying Li
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
| | - Peng Zhou
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
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16
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Abstract
Transgenic resistance to plant viruses is an important technology for control of plant virus infection, which has been demonstrated for many model systems, as well as for the most important plant viruses, in terms of the costs of crop losses to disease, and also for many other plant viruses infecting various fruits and vegetables. Different approaches have been used over the last 28 years to confer resistance, to ascertain whether particular genes or RNAs are more efficient at generating resistance, and to take advantage of advances in the biology of RNA interference to generate more efficient and environmentally safer, novel "resistance genes." The approaches used have been based on expression of various viral proteins (mostly capsid protein but also replicase proteins, movement proteins, and to a much lesser extent, other viral proteins), RNAs [sense RNAs (translatable or not), antisense RNAs, satellite RNAs, defective-interfering RNAs, hairpin RNAs, and artificial microRNAs], nonviral genes (nucleases, antiviral inhibitors, and plantibodies), and host-derived resistance genes (dominant resistance genes and recessive resistance genes), and various factors involved in host defense responses. This review examines the above range of approaches used, the viruses that were tested, and the host species that have been examined for resistance, in many cases describing differences in results that were obtained for various systems developed in the last 20 years. We hope this compilation of experiences will aid those who are seeking to use this technology to provide resistance in yet other crops, where nature has not provided such.
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Affiliation(s)
| | - Peter Palukaitis
- Department of Horticultural Sciences, Seoul Women's University, Seoul, Republic of Korea.
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Kung YJ, You BJ, Raja JAJ, Chen KC, Huang CH, Bau HJ, Yang CF, Huang CH, Chang CP, Yeh SD. Nucleotide sequence-homology-independent breakdown of transgenic resistance by more virulent virus strains and a potential solution. Sci Rep 2015; 5:9804. [PMID: 25913508 PMCID: PMC5386206 DOI: 10.1038/srep09804] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Accepted: 03/05/2015] [Indexed: 11/09/2022] Open
Abstract
Controlling plant viruses by genetic engineering, including the globally important Papaya ringspot virus (PRSV), mainly involves coat protein (CP) gene mediated resistance via post-transcriptional gene silencing (PTGS). However, the breakdown of single- or double-virus resistance in CP-gene-transgenic papaya by more virulent PRSV strains has been noted in repeated field trials. Recombination analysis revealed that the gene silencing suppressor HC-Pro or CP of the virulent PRSV strain 5-19 is responsible for overcoming CP-transgenic resistance in a sequence-homology-independent manner. Transient expression assays using agro-infiltration in Nicotiana benthamiana plants indicated that 5-19 HC-Pro exhibits stronger PTGS suppression than the transgene donor strain. To disarm the suppressor from the virulent strain, transgenic papaya lines were generated carrying untranslatable 5-19 HC-Pro, which conferred complete resistance to 5-19 and other geographic PRSV strains. Our study suggested the potential risk of the emergence of more virulent virus strains, spurred by the deployment of CP-gene-transgenic crops, and provides a strategy to combat such strains.
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Affiliation(s)
- Yi-Jung Kung
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- NCHU-UCD Plant and Food Biotechnology Center, National Chung Hsing University, Taiwan, R.O.C
| | - Bang-Jau You
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Department of Chinese Pharmaceutical Sciences and Chinese Medicine Resources, China Medical University, Taichung, Taiwan, R.O.C
| | - Joseph A. J. Raja
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- NCHU-UCD Plant and Food Biotechnology Center, National Chung Hsing University, Taiwan, R.O.C
| | - Kuan-Chun Chen
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Chiung-Huei Huang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Huey-Jiunn Bau
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Ching-Fu Yang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Chung-Hao Huang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Chung-Ping Chang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
| | - Shyi-Dong Yeh
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R.O.C
- NCHU-UCD Plant and Food Biotechnology Center, National Chung Hsing University, Taiwan, R.O.C
- Department of Chinese Pharmaceutical Sciences and Chinese Medicine Resources, China Medical University, Taichung, Taiwan, R.O.C
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18
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Zhang Y, Yu N, Huang Q, Yin G, Guo A, Wang X, Xiong Z, Liu Z. Complete genome of Hainan papaya ringspot virus using small RNA deep sequencing. Virus Genes 2014; 48:502-8. [PMID: 24510356 DOI: 10.1007/s11262-014-1042-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2013] [Accepted: 01/17/2014] [Indexed: 11/25/2022]
Abstract
Small RNA deep sequencing allows for virus identification, virus genome assembly, and strain differentiation. In this study, papaya plants with virus-like symptoms collected in Hainan province were used for deep sequencing and small RNA library construction. After in silicon subtraction of the papaya sRNAs, small RNA reads were used to in the viral genome assembly using a reference-guided, iterative assembly approach. A nearly complete genome was assembled for a Hainan isolate of papaya ringspot virus (PRSV-HN-2). The complete PRSV-HN-2 genome (accession no.: KF734962) was obtained after a 15-nucleotide gap was filled by direct sequencing of the amplified genomic region. Direct sequencing of several random genomic regions of the PRSV isolate did not find any sequence discrepancy with the sRNA-assembled genome. The newly sequenced PRSV-HN-2 genome shared a nucleotide identity of 96 and 94 % to that of the PRSV-HN (EF183499) and PRSV-HN-1 (HQ424465) isolates, and together with these two isolates formed a new PRSV clade. These data demonstrate that the small RNA deep sequencing technology provides a viable and rapid mean to assemble complete viral genomes in plants.
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Affiliation(s)
- Yuliang Zhang
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
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Rai MK, Shekhawat NS. Recent advances in genetic engineering for improvement of fruit crops. PLANT CELL, TISSUE AND ORGAN CULTURE (PCTOC) 2014; 116:1-15. [PMID: 0 DOI: 10.1007/s11240-013-0389-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2013] [Accepted: 09/30/2013] [Indexed: 05/24/2023]
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Shen W, Tuo D, Yan P, Li X, Zhou P. Detection of Papaya leaf distortion mosaic virus by reverse-transcription loop-mediated isothermal amplification. J Virol Methods 2013; 195:174-9. [PMID: 24100065 DOI: 10.1016/j.jviromet.2013.09.011] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2013] [Revised: 09/10/2013] [Accepted: 09/20/2013] [Indexed: 11/24/2022]
Abstract
Papaya leaf distortion mosaic virus (PLDMV) can infect transgenic papaya resistant to a related pathogen, Papaya ringspot virus (PRSV), posing a substantial threat to papaya production in China. Current detection methods, however, are unable to be used for rapid detection in the field. Here, a reverse-transcription loop-mediated isothermal amplification (RT-LAMP) assay was developed for the detection of PLDMV, using a set of four RT-LAMP primers designed based on the conserved sequence of PLDMV CP. The RT-LAMP method detected specifically PLDMV and was highly sensitive, with a detection limit of 1.32×10(-6) μg of total RNA per reaction. Indeed, the reaction was 10 times more sensitive than one-step RT-PCR, while also requiring significantly less time and equipment. The effectiveness of RT-LAMP and one-step RT-PCR in detecting the virus were compared using 90 field samples of non-transgenic papaya and 90 field samples of commercialized PRSV-resistant transgenic papaya from Hainan Island. None of the non-transgenic papaya tested positive for PLDMV using either method. In contrast, 19 of the commercialized PRSV-resistant transgenic papaya samples tested positive by RT-LAMP assay, and 6 of those tested negative by RT-PCR. Therefore, the PLDMV-specific RT-LAMP is a simple, rapid, sensitive, and cost-effective tool in the field diagnosis and control of PLDMV.
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Affiliation(s)
- Wentao Shen
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology & Analysis and Testing Center, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
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21
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Lin CY, Ku HM, Chiang YH, Ho HY, Yu TA, Jan FJ. Development of transgenic watermelon resistant to Cucumber mosaic virus and Watermelon mosaic virus by using a single chimeric transgene construct. Transgenic Res 2011; 21:983-93. [PMID: 22203520 DOI: 10.1007/s11248-011-9585-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Accepted: 12/19/2011] [Indexed: 10/14/2022]
Abstract
Watermelon, an important fruit crop worldwide, is prone to attack by several viruses that often results in destructive yield loss. To develop a transgenic watermelon resistant to multiple virus infection, a single chimeric transgene comprising a silencer DNA from the partial N gene of Watermelon silver mottle virus (WSMoV) fused to the partial coat protein (CP) gene sequences of Cucumber mosaic virus (CMV), Cucumber green mottle mosaic virus (CGMMV) and Watermelon mosaic virus (WMV) was constructed and transformed into watermelon (cv. Feeling) via Agrobacterium-mediated transformation. Single or multiple transgene copies randomly inserted into various locations in the genome were confirmed by Southern blot analysis. Transgenic watermelon R(0) plants were individually challenged with CMV, CGMMV or WMV, or with a mixture of these three viruses for resistance evaluation. Two lines were identified to exhibit resistance to CMV, CGMMV, WMV individually, and a mixed inoculation of the three viruses. The R(1) progeny of the two resistant R(0) lines showed resistance to CMV and WMV, but not to CGMMV. Low level accumulation of transgene transcripts in resistant plants and small interfering (si) RNAs specific to CMV and WMV were readily detected in the resistant R(1) plants by northern blot analysis, indicating that the resistance was established via RNA-mediated post-transcriptional gene silencing (PTGS). Loss of the CGMMV CP-transgene fragment in R1 progeny might be the reason for the failure to resistant CGMMV infection, as shown by the absence of a hybridization signal and no detectable siRNA specific to CGMMV in Southern and northern blot analyses. In summary, this study demonstrated that fusion of different viral CP gene fragments in transgenic watermelon contributed to multiple virus resistance via PTGS. The construct and resistant watermelon lines developed in this study could be used in a watermelon breeding program for resistance to multiple viruses.
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Affiliation(s)
- Ching-Yi Lin
- Department of Plant Pathology, National Chung Hsing University, Taichung, 402, Taiwan
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22
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Monteiro-Hara ACBA, Jadão AS, Mendes BMJ, Rezende JAM, Trevisan F, Mello APOA, Vieira MLC, Meletti LMM, De S Piedade SM. Genetic Transformation of Passionflower and Evaluation of R 1 and R 2 Generations for Resistance to Cowpea aphid borne mosaic virus. PLANT DISEASE 2011; 95:1021-1025. [PMID: 30732105 DOI: 10.1094/pdis-12-10-0873] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
We report on the production and evaluation of passionflower transgenic lines for resistance to Cowpea aphid borne mosaic virus (CABMV). Genetic transformation was done using Agrobacterium tumefaciens and transgene integration was confirmed by Southern blot analyses, resulting in nine transgenic lines for 'IAC 275' and three for 'IAC 277'. Transgenic lines were clonally propagated and evaluated for resistance to CABMV. After the third inoculation, under higher inoculum pressure, only propagated plants of the transgenic line T16 remained asymptomatic, indicating a high resistance to infection with CABMV. This transgenic line was self-pollinated and the R1 generation was evaluated together with the R1 generation of another resistant transgenic line (T2) identified previously. Plants were inoculated with CABMV by means of viruliferous Myzus nicotianae. All 524 T2R1 plants became infected, whereas 13 of 279 T16R1 remained asymptomatic after four successive inoculations. A T16R2 generation was obtained and plants were inoculated with CABMV mechanically or by aphids. After successive inoculations, 118 of 258 plants were symptomless, suggesting that the resistance to CABMV was maintained in the plant genome as the homozygous condition was achieved. Five selected resistant T16R2 plants which contained the capsid protein gene are being crossed for further analyses.
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Affiliation(s)
- Alessandra C B A Monteiro-Hara
- Laboratório de Biotecnologia Vegetal, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA/USP), 13400-970 Piracicaba, SP, Brazil
| | - Adriana S Jadão
- Departamento de Fitopatologia e Nematologia, Escola Superior de Agricultura 'Luiz de Queiroz', Universidade de São Paulo (ESALQ/USP), 13418-900 Piracicaba, SP, Brazil
| | | | | | | | | | | | - L M M Meletti
- Centro de Fruticultura, Instituto Agronômico, 13020-902 Campinas, SP, Brazil
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23
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Chen YN, Hwang WZ, Fang TJ, Cheng YH, Lin JY. The impact of transgenic papaya (TPY10-4) fruit supplementation on immune responses in ovalbumin-sensitised mice. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2011; 91:539-546. [PMID: 21218490 DOI: 10.1002/jsfa.4218] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2010] [Revised: 10/14/2010] [Accepted: 10/15/2010] [Indexed: 05/30/2023]
Abstract
BACKGROUND A transgenic papaya line (TPY10-4) that is resistant to both papaya ringspot virus (PRSV) and papaya leaf distortion mosaic virus (PLDMV) has been developed in Taiwan. This study investigated the immunomodulatory properties of transgenic TPY10-4 and its native (TCK) papaya fruits using an ovalbumin (OVA)-sensitised mouse model. Both green and ripe papaya fruits at low (0.2 g powder kg(-1) body weight (BW)) and high (1.6 g powder kg(-1) BW) doses were administered to experimental mice by intragastric gavage for 5 weeks. Changes in serum total immunoglobulin A (IgA), IgE, IgG and IgM levels, OVA-specific IgE, IgG1 and IgG2a titres and Th1/Th2 cytokine secretions using splenocytes were determined. RESULTS Transgenic TPY10-4 or native TCK papaya fruit supplementation did not significantly affect body, visceral organ and relative tissue weights, total IgE antibody levels, OVA-specific IgE and IgG1 antibody titres or OVA-stimulated interferon-γ (IFN-γ), interleukin-2 (IL-2), IL-4, IL-5 and IL-10 secretions using splenocytes. However, transgenic papaya fruits markedly increased serum total IgM levels. CONCLUSION This study suggests that transgenic TPY10-4 papaya fruits do not increase the allergenic potential of OVA by oral administration but may have a protective immunity via increasing the serum total IgM level.
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Affiliation(s)
- Yi-Ning Chen
- Department of Food Science and Biotechnology, National Chung Hsing University, No. 250 Kuokuang Road, Taichung 40227, Taiwan
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Generation of hermaphrodite transgenic papaya lines with virus resistance via transformation of somatic embryos derived from adventitious roots of in vitro shoots. Transgenic Res 2009; 19:621-35. [PMID: 19943109 DOI: 10.1007/s11248-009-9344-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Accepted: 11/06/2009] [Indexed: 10/20/2022]
Abstract
Papaya production is seriously limited by Papaya ringspot virus (PRSV) worldwide and Papaya leaf-distortion mosaic virus (PLDMV) in Eastern Asia. An efficient transformation method for developing papaya lines with transgenic resistance to these viruses and commercially desirable traits, such as hermaphroditism, is crucial to shorten the breeding program for this fruit crop. In this investigation, an untranslatable chimeric construct pYP08 containing truncated PRSV coat protein (CP) and PLDMV CP genes coupled with the 3' untranslational region of PLDMV, was generated. Root segments from different portions of adventitious roots of in vitro multiple shoots of hermaphroditic plants of papaya cultivars 'Tainung No. 2', 'Sunrise', and 'Thailand' were cultured on induction medium for regeneration into somatic embryos. The highest frequency of somatic embryogenesis was from the root-tip segments of adventitious roots developed 2-4 weeks after rooting in perlite medium. After proliferation, embryogenic tissues derived from somatic embryos were wounded in liquid-phase by carborundum and transformed by Agrobacterium carrying pYP08. Similarly, another construct pBG-PLDMVstop containing untranslatable CP gene of PLDMV was also transferred to 'Sunrise' and 'Thailand', the parental cultivars of 'Tainung No. 2'. Among 107 transgenic lines regenerated from 349 root-tip segments, nine lines of Tainung No. 2 carrying YP08 were highly resistant to PRSV and PLDMV, and 9 lines (8 'Sunrise' and 1 'Thailand') carrying PLDMV CP highly resistant to PLDMV, by a mechanism of post-transcriptional gene silencing. The hermaphroditic characteristics of the transgenic lines were confirmed by PCR with sex-linked primers and phenotypes of flower and fruit. Our approach has generated transgenic resistance to both PRSV and PLDMV with commercially desirable characters and can significantly shorten the time-consuming breeding programs for the generation of elite cultivars of papaya hybrids.
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