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Choi S, Hauber ME, Legendre LJ, Kim NH, Lee YN, Varricchio DJ. Microstructural and crystallographic evolution of palaeognath (Aves) eggshells. eLife 2023; 12:e81092. [PMID: 36719067 PMCID: PMC9889092 DOI: 10.7554/elife.81092] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 12/11/2022] [Indexed: 02/01/2023] Open
Abstract
The avian palaeognath phylogeny has been recently revised significantly due to the advancement of genome-wide comparative analyses and provides the opportunity to trace the evolution of the microstructure and crystallography of modern dinosaur eggshells. Here, eggshells of all major clades of Palaeognathae (including extinct taxa) and selected eggshells of Neognathae and non-avian dinosaurs are analysed with electron backscatter diffraction. Our results show the detailed microstructures and crystallographies of (previously) loosely categorized ostrich-, rhea-, and tinamou-style morphotypes of palaeognath eggshells. All rhea-style eggshell appears homologous, while respective ostrich-style and tinamou-style morphotypes are best interpreted as homoplastic morphologies (independently acquired). Ancestral state reconstruction and parsimony analysis additionally show that rhea-style eggshell represents the ancestral state of palaeognath eggshells both in microstructure and crystallography. The ornithological and palaeontological implications of the current study are not only helpful for the understanding of evolution of modern and extinct dinosaur eggshells, but also aid other disciplines where palaeognath eggshells provide useful archive for comparative contrasts (e.g. palaeoenvironmental reconstructions, geochronology, and zooarchaeology).
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Affiliation(s)
- Seung Choi
- Department of Earth Sciences, Montana State UniversityBozemanUnited States
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesBeijingChina
| | - Mark E Hauber
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois Urbana-ChampaignUrbanaUnited States
| | - Lucas J Legendre
- Department of Geological Sciences, University of Texas at AustinAustinUnited States
| | - Noe-Heon Kim
- School of Earth and Environmental Sciences, Seoul National UniversitySeoulRepublic of Korea
- Department of Geosciences, Princeton UniversityPrincetonUnited States
| | - Yuong-Nam Lee
- School of Earth and Environmental Sciences, Seoul National UniversitySeoulRepublic of Korea
| | - David J Varricchio
- Department of Earth Sciences, Montana State UniversityBozemanUnited States
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Jurašeková Z, Fabriciová G, Silveira LF, Lee YN, Gutak JM, Ataabadi MM, Kundrát M. Raman Spectra and Ancient Life: Vibrational ID Profiles of Fossilized (Bone) Tissues. Int J Mol Sci 2022; 23:10689. [PMID: 36142598 PMCID: PMC9502200 DOI: 10.3390/ijms231810689] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 09/11/2022] [Accepted: 09/12/2022] [Indexed: 11/17/2022] Open
Abstract
Raman micro-spectroscopy is a non-destructive and non-contact analytical technique that combines microscopy and spectroscopy, thus providing a potential for non-invasive and in situ molecular identification, even over heterogeneous and rare samples such as fossilized tissues. Recently, chemical imaging techniques have become an increasingly popular tool for characterizing trace elements, isotopic information, and organic markers in fossils. Raman spectroscopy also shows a growing potential in understanding bone microstructure, chemical composition, and mineral assemblance affected by diagenetic processes. In our lab, we have investigated a wide range of different fossil tissues, mainly of Mesozoic vertebrates (from Jurassic through Cretaceous). Besides standard spectra of sedimentary rocks, including pigment contamination, our Raman spectra also exhibit interesting spectral features in the 1200-1800 cm-1 spectral range, where Raman bands of proteins, nucleic acids, and other organic molecules can be identified. In the present study, we discuss both a possible origin of the observed bands of ancient organic residues and difficulties with definition of the specific spectral markers in fossilized soft and hard tissues.
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Affiliation(s)
- Zuzana Jurašeková
- Department of Biophysics, Faculty of Science, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Gabriela Fabriciová
- Department of Biophysics, Faculty of Science, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Luis F. Silveira
- Museu de Zoologia da Universidade de São Paulo, Caixa Postal 42.494, São Paulo 04218-970, Brazil
| | - Yuong-Nam Lee
- School of Earth and Environmental Sciences, Seoul National University, Seoul 08826, Korea
| | - Jaroslav M. Gutak
- Department of Geology, Geodesy, and Life Security, Institute of Mining and Geosystems, Siberian State Industrial University, Kirov Street 42, 654007 Novokuznetsk, Russia
| | - Majid Mirzaie Ataabadi
- Department of Geology, Faculty of Science, University of Zanjan, Zanjan 4537138791, Iran
| | - Martin Kundrát
- PaleoBioImaging Lab, Evolutionary Biodiversity Research Group, Center for Interdisciplinary Biosciences, Technology and Innovation Park, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
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Legendre LJ, Choi S, Clarke JA. The diverse terminology of reptile eggshell microstructure and its effect on phylogenetic comparative analyses. J Anat 2022; 241:641-666. [PMID: 35758681 PMCID: PMC9358755 DOI: 10.1111/joa.13723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/05/2022] [Accepted: 06/16/2022] [Indexed: 11/29/2022] Open
Abstract
Reptile eggshell ensures water and gas exchange during incubation and plays a key role in reproductive success. The diversity of reptilian incubation and life history strategies has led to many clade-specific structural adaptations of their eggshell, which have been studied in extant taxa (i.e. birds, crocodilians, turtles, and lepidosaurs). Most studies on non-avian eggshells were performed over 30 years ago and categorized reptile eggshells into two main types: "hard" and "soft" - sometimes with a third intermediate category, "semi-rigid." In recent years, however, debate over the evolution of eggshell structure of major reptile clades has revealed how definitions of hard and soft eggshells influence inferred deep-time evolutionary patterns. Here, we review the diversity of extant and fossil eggshell with a focus on major reptile clades, and the criteria that have been used to define hard, soft, and semi-rigid eggshells. We show that all scoring approaches that retain these categories discretize continuous quantitative traits (e.g. eggshell thickness) and do not consider independent variation of other functionally important microstructural traits (e.g. degree of calcification, shell unit inner structure). We demonstrate the effect of three published approaches to discretizing eggshell type into hard, semi-rigid, and soft on ancestral state reconstructions using 200+ species representing all major extant and extinct reptile clades. These approaches result in different ancestral states for all major clades including Archosauria and Dinosauria, despite a difference in scoring for only 1-4% of the sample. Proposed scenarios of reptile eggshell evolution are highly conditioned by sampling, tree calibration, and lack of congruence between definitions of eggshell type. We conclude that the traditional "soft/hard/semi-rigid" classification of reptilian eggshells should be abandoned and provide guidelines for future descriptions focusing on specific functionally relevant characteristics (e.g. inner structures of shell units, pores, and membrane elements), analyses of these traits in a phylogenetic context, and sampling of previously undescribed taxa, including fossil eggs.
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Affiliation(s)
- Lucas J. Legendre
- Department of Geological SciencesUniversity of Texas at AustinAustinTexasUSA
| | - Seung Choi
- Department of Earth SciencesMontana State UniversityBozemanMontanaUSA
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of SciencesInstitute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesBeijingChina
| | - Julia A. Clarke
- Department of Geological SciencesUniversity of Texas at AustinAustinTexasUSA
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Calizza E, Signa G, Rossi L, Vizzini S, Careddu G, Tramati CD, Caputi SS, Mazzola A, Costantini ML. Trace elements and stable isotopes in penguin chicks and eggs: A baseline for monitoring the Ross Sea MPA and trophic transfer studies. MARINE POLLUTION BULLETIN 2021; 170:112667. [PMID: 34242962 DOI: 10.1016/j.marpolbul.2021.112667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 06/20/2021] [Accepted: 06/21/2021] [Indexed: 06/13/2023]
Abstract
Multi-tissue trace elements (TEs), C, N concentrations and stable isotopes (δ13C, δ15N) of chick carcasses and eggs of Adélie and Emperor penguins were studied to i) provide reference data before the recent institution of the Ross Sea Marine Protected Area (Antarctica), and ii) provide conversion factors that allow estimating C, N, δ13C and δ15N in edible tissues from non-edible ones, thus improving the use of stable isotopes in contamination and trophic transfer studies. Higher concentrations of As, Cd, Cr, Cu, Hg, Mn and Pb were found in chick carcasses than in eggs, suggesting increasing contamination in recent decades and high toxicity risks for penguin consumers. Isotopic conversion factors highlighted small differences among body tissues and conspecifics. These values suggest that chick carcasses are reliable indicators of the energy pathways underlying the two penguin species, their trophic position in the food web and their exposure to TEs.
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Affiliation(s)
- Edoardo Calizza
- Department of Environmental Biology, Sapienza University of Rome, Via dei Sardi 70, 00185 Rome, Italy; CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy
| | - Geraldina Signa
- CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy; Department of Earth and Marine Sciences, University of Palermo, via Archirafi 18, 90123 Palermo, Italy.
| | - Loreto Rossi
- Department of Environmental Biology, Sapienza University of Rome, Via dei Sardi 70, 00185 Rome, Italy; CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy
| | - Salvatrice Vizzini
- CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy; Department of Earth and Marine Sciences, University of Palermo, via Archirafi 18, 90123 Palermo, Italy
| | - Giulio Careddu
- Department of Environmental Biology, Sapienza University of Rome, Via dei Sardi 70, 00185 Rome, Italy; CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy
| | - Cecilia Doriana Tramati
- CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy; Department of Earth and Marine Sciences, University of Palermo, via Archirafi 18, 90123 Palermo, Italy
| | - Simona Sporta Caputi
- Department of Environmental Biology, Sapienza University of Rome, Via dei Sardi 70, 00185 Rome, Italy; CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy
| | - Antonio Mazzola
- CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy; Department of Earth and Marine Sciences, University of Palermo, via Archirafi 18, 90123 Palermo, Italy
| | - Maria Letizia Costantini
- Department of Environmental Biology, Sapienza University of Rome, Via dei Sardi 70, 00185 Rome, Italy; CoNISMa, National Inter-University Consortium for Marine Sciences, Piazzale Flaminio 9, 00196 Rome, Italy
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Hilton EJ, Watkins-Colwell GJ, Huber SK. The Expanding Role of Natural History Collections. ICHTHYOLOGY & HERPETOLOGY 2021. [DOI: 10.1643/t2020018] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Dawson RR, Field DJ, Hull PM, Zelenitsky DK, Therrien F, Affek HP. Eggshell geochemistry reveals ancestral metabolic thermoregulation in Dinosauria. SCIENCE ADVANCES 2020; 6:eaax9361. [PMID: 32110726 PMCID: PMC7021498 DOI: 10.1126/sciadv.aax9361] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 12/13/2019] [Indexed: 06/10/2023]
Abstract
Studying the origin of avian thermoregulation is complicated by a lack of reliable methods for measuring body temperatures in extinct dinosaurs. Evidence from bone histology and stableisotopes often relies on uncertain assumptions about the relationship between growth rate and body temperature, or the isotopic composition (δ18O) of body water. Clumped isotope (Δ47) paleothermometry, based on binding of 13C to 18O, provides a more robust tool, but has yet to be applied across a broad phylogenetic range of dinosaurs while accounting for paleoenvironmental conditions. Applying this method to well-preserved fossil eggshells demonstrates that the three major clades of dinosaurs, Ornithischia, Sauropodomorpha, and Theropoda, were characterized by warm body temperatures. Dwarf titanosaurs may have exhibited similar body temperatures to larger sauropods, although this conclusion isprovisional, given current uncertainties in taxonomic assignment of dwarf titanosaur eggshell. Our results nevertheless reveal that metabolically controlled thermoregulation was the ancestral condition for Dinosauria.
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Affiliation(s)
- Robin R. Dawson
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA
| | - Daniel J. Field
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA
- Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, UK
| | - Pincelli M. Hull
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA
| | - Darla K. Zelenitsky
- Department of Geoscience, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - François Therrien
- Royal Tyrrell Museum of Palaeontology, Drumheller, Alberta T0J 0Y0, Canada
| | - Hagit P. Affek
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA
- Institute of Earth Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
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