Investigation of growth kinetics and partial denitrification performance in strain Acinetobacter johnsonii under different environmental conditions

New insight into the metabolic mechanism of a novel lipid-utilizing and denitrifying bacterium capable of simultaneous removal of nitrogen and grease through transcriptome analysis

Introduction

Issues related to fat, oil, and grease from kitchen waste (KFOG) in lipid-containing wastewater are intensifying globally. We reported a novel denitrifying bacterium Pseudomonas CYCN-C with lipid-utilizing activity and high nitrogen-removal efficiency. The aim of the present study was aim to explore the metabolic mechanism of the simultaneous lipid-utilizing and denitrifying bacterium CYCN-C at transcriptome level.

Methods

We comparatively investigated the cell-growth and nitrogen-removal performances of newly reported Pseudomonas glycinae CYCN-C under defined cultivation conditions. Transcriptome analysis was further used to investigate all pathway genes involved in nitrogen metabolism, lipid degradation and utilization, and cell growth at mRNA levels.

Results

CYCN-C could directly use fat, oil, and grease from kitchen waste (KFOG) as carbon source with TN removal efficiency of 73.5%, significantly higher than that (60.9%) with sodium acetate. The change levels of genes under defined KFOG and sodium acetate were analyzed by transcriptome sequencing. Results showed that genes cyo, CsrA, PHAs, and FumC involved in carbon metabolism under KFOG were significantly upregulated by 6.9, 0.7, 26.0, and 19.0-folds, respectively. The genes lipA, lipB, glpD, and glpK of lipid metabolic pathway were upregulated by 0.6, 0.4, 21.5, and 1.3-folds, respectively. KFOG also improved the denitrification efficiency by inducing the expression of the genes nar, nirB, nirD, and norR of denitrification pathways.

Conclusion

In summary, this work firstly provides valuable insights into the genes expression of lipid-utilizing and denitrifying bacterium, and provides a new approach for sewage treatment with reuse of KFOG wastes.

Fast start-up and stable operation of mainstream anammox without inoculation in an A2/O process treating low COD/N real municipal wastewater

It is of great significance to start up the anammox process in the most commonly used anaerobic-anoxic-oxic (A²/O) process in treating mainstream municipal wastewater. Recently, partial-denitrification/anammox (PD/A) has attracted increasing interest as a new avenue in mainstream. This study investigated the in situ start-up of PD/A process in a traditional A²/O process. The PD/A system was rapidly started up within 60 days by adding virgin carriers into the anoxic zone and then run stably for the next 90 days. The in situ anammox activity reached 1.0 ± 0.1 mg NH₄⁺-N/L/h contributing 37.9 ± 6.2% of total nitrogen removal. As a result, the nitrogen removal efficiency of the system increased by 16.9%. The anammox bacteria (AnAOB) on the anoxic biofilms were enriched with a doubling time of 14.53d, and the relative abundance reached 2.49% on day 150. Phylogenetic analysis showed the dominant AnAOB was related to Ca. Brocadia sp. 40, which was the only detected anammox genus in the anoxic biofilm from start-up to stable operation. Batch tests and qPCR results revealed that compared with the floc sludge, the anoxic biofilms exhibited NO₂^- accumulation driven by PD and performed a better coordination between denitrifiers and AnAOB. Overall, this study provides great confidence for the in situ fast start-up of mainstream anammox using conventional activated sludge.

Exploring and comparing the impacts of low temperature to endogenous and exogenous partial denitrification: The nitrite supply, transcription mechanism, and microbial dynamics

Nitrite supply was pretty significant to exogenous or endogenous partial denitrification (ExPD or EdPD) for their combination with anammox in removing nitrogen. This study investigated how temperature impacted the nitrite supply of ExPD and EdPD, through long-term experiments in two 10 L sequencing batch reactors (SBRs) and 12 batch temperature tests, with sodium acetate as organic. It was demonstrated that low temperature (5-15 °C) favored higher nitrite transformation rate (NTR) for two systems (1.1-1.3 and 1.1-1.2 times higher separately), and ExPD owned higher nitrite-supply ability than EdPD (32.8 % higher NTR). Moreover, quantitative reverse transcription PCR and 16srDNA sequencing were conducted, exploring the inherent mechanism and microbial dynamics. Results presented that more inhibition to transcription and translation of nirSK genes than narG in low temperature induced higher NTR. Besides, compared with ExPD, less microbial dynamics and granule size reduction occurred to EdPD, which was more capable of adapting to low temperature.

Efficient detoxication of hydroxylamine and nitrite through heterotrophic nitrification and aerobic denitrification by Acinetobacter johnsonii EN-J1

The co-existence of hydroxylamine (NH₂OH) and nitrite (NO₂ ^--N) can aggravate the difficulty of wastewater treatment. The roles of hydroxylamine (NH₂OH) and nitrite (NO₂ ^--N) in accelerating the elimination of multiple nitrogen sources by a novel isolated strain of Acinetobacter johnsonii EN-J1 were investigated in this study. The results demonstrated that strain EN-J1 could eliminate 100.00% of NH₂OH (22.73 mg/L) and 90.09% of NO₂ ^--N (55.32 mg/L), with maximum consumption rates of 1.22 and 6.75 mg/L/h, respectively. Prominently, the toxic substances NH₂OH and NO₂ ^--N could both facilitate nitrogen removal rates. Compared with the control treatment, the elimination rates of nitrate (NO₃ ^--N) and NO₂ ^--N were enhanced by 3.44 and 2.36 mg/L/h after supplementation with 10.00 mg/L NH₂OH, and those of ammonium (NH₄ ⁺-N) and NO₃ ^--N were improved by 0.65 and 1.00 mg/L/h after the addition of 50.00 mg/L NO₂ ^--N. Furthermore, the nitrogen balance results indicated that over 55.00% of the initial total nitrogen was transformed into gaseous nitrogen by heterotrophic nitrification and aerobic denitrification (HN-AD). Ammonia monooxygenase (AMO), hydroxylamine oxidoreductase (HAO), nitrate reductase (NR), and nitrite reductase (NIR), which are essential for HN-AD, were detected at levels of 0.54, 0.15, 0.14, and 0.01 U/mg protein, respectively. All findings confirmed that strain EN-J1 could efficiently execute HN-AD, detoxify NH₂OH and NO₂ ^--N, and ultimately promote nitrogen removal rates.

Decolorization of Reactive Red 120 by a novel bacterial consortium: Kinetics and heavy metal inhibition study

<abstract><p>Juru River is one of the most polluted rivers in Malaysia. A dye-degrading bacterial consortium has been isolated from the river's sediment. This consortium JR3 consists of <italic>Pseudomonas aeruginosa</italic> MM01, <italic>Enterobacter</italic> sp. MM05 and <italic>Serratia marcescens</italic> MM06, which were able to decolorize up to 700 ppm of the Reactive Red 120 (RR120) dye under optimal conditions with limited substrate available. Substrate inhibition kinetics were investigated, and, based on the best model, Aiba, the maximum growth rate was 0.795 h^–1, while the saturation constant and inhibitory constant were 0.185% and 0.14%, respectively. In addition, the influence of various metal ions on the growth and decolorization rate of this bacterial consortium on RR120 was investigated. Chromium showed the weakest effect on the decolorization of 200 ppm RR120, with 73.5% removal and bacterial growth of 11.461 log CFU mL^–1. Zinc yielded the second weakest effect, followed by silver and lead, with percentages of RR120 decolorization of 63.8%, 54.6% and 50.5%, respectively. Meanwhile, cadmium, arsenic and copper reduced the decolorization of RR120 in consortium JR3 by half. Mercury strongly inhibited decolorization by 32.5%. Based on the least inhibited heavy metal in RR120 decolorization activity of consortium JR3, the best inhibitory kinetic model was Levenspiel, with a maximum growth rate of 0.632 h^–1, while the saturation constant and inhibitory constants were 15.08% and 0.5783%, respectively. The metal-tolerant azo dye-degrading bacterial consortium will be very useful in dye remediation in metal-laden polluted environments.</p></abstract>

Nitrogen removal characteristics of biofilms in each area of a full-scale AAO oxidation ditch process

Plastic carriers were installed in different areas of a full-scale anaerobic/anoxic/aerobic (AAO) oxidation ditch process, and the dynamics of nitrogen removal, biofilm morphologies, and microorganism species were investigated. The results showed that the biofilm at the front of the aerobic area (dissolved oxygen [DO] = 0.93 mg L^-1) provided the best denitrification, with specific nitrate and nitrite reduction rates of 10.16 and 3.78 mg·(g·h)^-1, respectively. The biofilm in the middle of the aerobic area (DO = 1.27 mg L^-1) exhibited the best nitrification performance, with a maximum specific ammonia oxidation rate of 3.21 mg·(g·h)^-1. The biofilm at the end of the aerobic area (DO = 0.01 mg L^-1) exhibited the highest anammox potential with a maximum specific anammox rate of 0.67 mg·(g·h)^-1. No correlation was observed between the specific nitrogen removal rates and abundance of nitrogen-removing microorganisms at the genus level. Biofilm denitrification during the process was primarily completed by heterotrophic denitrifying bacteria (Thauera, Acinetobacter, Hyphomicrobium, and Thermomonas). Aerobic denitrifying bacteria (0.19% Thauera and 0.34% Hyphomicrobium) were identified as the main denitrifying bacteria in the middle of the aerobic area. The dominant nitrifying microorganisms in the middle of the aerobic area were Nitrosomonas (0.50%) and Nitrospira (1.04%). A biofilm in the end of the aerobic area exhibited specific anammox potential, which may have been related to the dominance of 0.024% Candidatus Brocadia. Kinetic analysis revealed that adding plastic carriers to the front and middle of the aerobic area contributed to stable nitrogen removal efficiency.

Nitrogen Removal Characteristics of a Cold-Tolerant Aerobic Denitrification Bacterium, Pseudomonas sp. 41

Nitrogen pollution of surface water is the main cause of water eutrophication, and is considered a worldwide challenge in surface water treatment. Currently, the total nitrogen (TN) content in the effluent of wastewater treatment plants (WWTPs) is still high at low winter temperatures, mainly as a result of the incomplete removal of nitrate (NO3−-N). In this research, a novel aerobic denitrifier identified as Pseudomonas sp. 41 was isolated from municipal activated sludge; this strain could rapidly degrade a high concentration of NO3−-N at low temperature. Strain 41 completely converted 100 mg/L NO3−-N in 48 h at 15 °C, and the maximum removal rate reached 4.0 mg/L/h. The functional genes napA, nirS, norB and nosZ were successfully amplified, which provided a theoretical support for the aerobic denitrification capacity of strain 41. In particular, the results of denitrification experiments showed that strain 41 could perform aerobic denitrification under the catalysis of NAP. Nitrogen balance analysis revealed that strain 41 degraded NO3−-N mainly through assimilation (52.35%) and aerobic denitrification (44.02%), and combined with the gene amplification results, the nitrate metabolism pathway of strain 41 was proposed. Single-factor experiments confirmed that strain 41 possessed the best nitrogen removal performance under the conditions of sodium citrate as carbon source, C/N ratio 10, pH 8, temperature 15–30 °C and rotation speed 120 rpm. Meanwhile, the bioaugmentation test manifested that the immobilized strain 41 remarkably improved the denitrification efficiency and shortened the reaction time in the treatment of synthetic wastewater.

Nitrate Water Contamination from Industrial Activities and Complete Denitrification as a Remediation Option

Freshwater is a scarce resource that continues to be at high risk of pollution from anthropogenic activities, requiring remediation in such cases for its continuous use. The agricultural and mining industries extensively use water and nitrogen (N)-dependent products, mainly in fertilizers and explosives, respectively, with their excess accumulating in different water bodies. Although removal of NO3 from water and soil through the application of chemical, physical, and biological methods has been studied globally, these methods seldom yield N2 gas as a desired byproduct for nitrogen cycling. These methods predominantly cause secondary contamination with deposits of chemical waste such as slurry brine, nitrite (NO2), ammonia (NH3), and nitrous oxide (N2O), which are also harmful and fastidious to remove. This review focuses on complete denitrification facilitated by bacteria as a remedial option aimed at producing nitrogen gas as a terminal byproduct. Synergistic interaction of different nitrogen metabolisms from different bacteria is highlighted, with detailed attention to the optimization of their enzymatic activities. A biotechnological approach to mitigating industrial NO3 contamination using indigenous bacteria from wastewater is proposed, holding the prospect of optimizing to the point of complete denitrification. The approach was reviewed and found to be durable, sustainable, cost effective, and environmentally friendly, as opposed to current chemical and physical water remediation technologies.

Simultaneous removal of nitrate, manganese, and tetracycline by Zoogloea sp. MFQ7: Adsorption mechanism of tetracycline by biological precipitation

A Mn(II) oxidizing-denitrifying and tetracycline (TC) removal bacterium Zoogloea sp. MFQ7 was isolated in this study. Nitrogen removal was 83.49% by nitrogen balance experiment. The maximum removal efficiencies of nitrate, Mn(II), and TC by strain MFQ7 within 96 h was 100.00, 74.56, and 63.59% at C/N of 2.0, pH of 7.0, Mn(II) of 20 mg L^-1, temperature of 30.0 °C, and TC of 0.2 mg L^-1. SEM illustrated that biogenic manganese oxides (BMO) was petal-like, XRD and XPS analyses confirmed that MnO₂ was the main component of BMO. Besides, the maximum adsorption capacity of BMO for TC was 52.21 mg g^-1. FTIR detected the changes in TC adsorption by BMO. Pseudo-second-order model (R² = 0.994) explained the adsorption kinetics of TC on BMO and Langmuir isotherm model (R² = 0.983) suggested that it was homogeneous adsorption, thermodynamics data (ΔG < 0, ΔH = 18.31 kJ mol^-1, ΔS = 72.8 J (mol*K)^-1) confirmed that adsorption was endothermic and spontaneous.

Recent advances in partial denitrification-anaerobic ammonium oxidation process for mainstream municipal wastewater treatment

To solve the bottleneck of the unstable accumulation of nitrite in the partial nitrification (PN)-anammox (AMX) in municipal wastewater treatment, a novel process called partial denitrification (PD)-AMX has been developed. PD-AMX, which is known for cost-efficiency and environmental friendliness, has currently exhibited a promising potential for the removal of biological nitrogen from municipal wastewater and has attracted much research interest regarding its process mechanisms, as well as its practical applications. Here, we review the recent advances in the PD process and its coupling to the anammox process, including the development, basic principles, main characteristics, and critical process parameters of the stable operation of the PD-AMX process. We also explore the microbial community and its characteristics in the system and summarize the knowledge of the dominant bacteria to clarify the key factors affecting PD-AMX. Then, we introduce the engineering feasibility and economic feasibility as well as the potential challenges of the process. The induction and implementation of partial denitrification and maintenance of mainstream anammox are critical issues to be urgently solved. Meanwhile, the implementation of a full mainstream anammox application remains burdensome, while the mechanism of partial denitrification coupled to anammox needs to be further studied. Additionally, stable operation performance and process control¹ methods need to be optimized or developed for the PD-AMX system for better engineering practice. This review can help to accelerate the research and application of the PD-AMX process for municipal wastewater treatment.

Characteristics of nutrients removal under partial denitrification initiated by different initial nitrate concentration

The partial denitrification (PD) is a very promising process developed in the last decade, to study the comprehensive influence of influent carbon to nitrogen (C/N) on the activated sludge system under PD, six sequencing batch reactors (SBRs) were operated in parallel at C/N of 2.75, 3.30, 4.13, 5.50, 8.25 and 16.50, the nitrogen removal, phosphorus removal and sludge settleability of PD were investigated. The results showed that PD was observed treating synthetic wastewater in all the six SBRs, and the nitrite accumulation rate (NAR) was highest at C/N of 5.50 (NAR of 82.30%). However, due to the alternate inhibition of NO₂^--N and free nitrous acid (FNA) produced by a limited carbon source, both the sludge settleability and phosphorus removal deteriorated. The average SVI at C/N of 8.25 was 130% lower than C/N of 3.30, and the average amount of PO₄^3--P released at C/N of 16.5 was 189% higher than C/N of 2.75. Kinetic analysis showed that the denitrification kinetics of PD and complete denitrification were similar, and the nitrite accumulation was caused by the difference between nitrate reduction rate and nitrite reduction rate. Variations of on-line parameters (pH and ORP) revealed that nitrite accumulation could be indicated by judging the nitrate turning point and nitrite turning point on pH and ORP curves, which provided guidance for the setup of PD.

The role and effectiveness of monoculture and polyculture phytoremediation systems in fish farm wastewater

Phytoremediation offers a sustainable solution to aquaculture pollution, but studies with critical evaluations of the treatment performances of macrophyte systems are limited. This study intended to evaluate the roles and treatment profiles of Spirodela polyrhiza (L.) Schleid. and Lemna sp. systems in terms of ammonia, nitrate, nitrite, phosphate (NH3-N, NO3 --N, NO2 --N, PO4 3-), chemical oxygen demand (COD), turbidity, and total suspended solids (TSS) on fish farm wastewater and to elucidate the rationale behind the removal of the pollutants and the changes in a raceway pond rig. The nitrogen and phosphorus removal in the Spirodela polyrhiza monoculture system outperformed the other configured systems. An 81% reduction in ammonia (to 3.90 mg of NH3-N/L), and sharp declines of up to 75%, 88%, and 71% in TSS, turbidity, and COD levels were recorded within two days, while significant decreases in nitrate, nitrite, and phosphate levels were observed. This indicated that the system could inhibit nitrate and nitrite spikes in waters (nitrification) via reducing the available ammonia and limiting subsequent nitrite and nitrate conversion, while reducing TSS in algal-bloom wastewater via shading. High biomass productivity and superior protein content were observed in the macrophyte systems (S. polyrhiza + Lemna sp. polyculture system), with up to 112% and 12% increases, respectively. This study demonstrated that the S. polyrhiza monoculture system is effective at treating fish farm wastewater, lowering the levels of relevant inorganic and organic pollutants, and it could be used as a biofilter for natural waters, preserving the existing ecology.

Biologically mediated release of endogenous N2O and NO2 gases in a hydrothermal, hypoxic subterranean environment

The migration of geogenic gases in continental areas with geothermal activity and active faults is an important process releasing greenhouse gases (GHG) to the lower troposphere. In this respect, caves in hypogenic environments are natural laboratories to study the compositional evolution of deep-endogenous fluids through the Critical Zone. Vapour Cave (Alhama, Murcia, Spain) is a hypogenic cave formed by the upwelling of hydrothermal CO₂-rich fluids. Anomalous concentrations of N₂O and NO₂ were registered in the cave's subterranean atmosphere, averaging ten and five times the typical atmospheric backgrounds, respectively. We characterised the thermal conditions, gaseous compositions, sediments, and microbial communities at different depths in the cave. We did so to understand the relation between N-cycling microbial groups and the production and transformation of nitrogenous gases, as well as their coupled evolution with CO₂ and CH₄ during their migration through the Critical Zone to the lower troposphere. Our results showed an evident vertical stratification of selected microbial groups (Archaea and Bacteria) depending on the environmental parameters, including O₂, temperature, and GHG concentration. Both the N₂O isotope ratios and the predicted ecological functions of bacterial and archaeal communities suggest that N₂O and NO₂ emissions mainly depend on the nitrification by ammonia-oxidising microorganisms. Denitrification and abiotic reactions of the reactive intermediates NH₂OH, NO, and NO₂^- are also plausible according to the results of the phylogenetic analyses of the microbial communities. Nitrite-dependent anaerobic methane oxidation by denitrifying methanotrophs of the NC10 phylum was also identified as a post-genetic process during migration of this gas to the surface. To the best of our knowledge, our report provides, for the first time, evidence of a niche densely populated by Micrarchaeia, which represents more than 50% of the total archaeal abundance. This raises many questions on the metabolic behaviour of this and other archaeal phyla.