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Tabassum N, Shafiq M, Fatima S, Tahir S, Tabassum B, Ali Q, Javed MA. Genome-wide in-silico analysis of ethylene biosynthesis gene family in Musa acuminata L. and their response under nutrient stress. Sci Rep 2024; 14:558. [PMID: 38177217 PMCID: PMC10767074 DOI: 10.1038/s41598-023-51075-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 12/30/2023] [Indexed: 01/06/2024] Open
Abstract
Ethylene is a gaseous phytohormone involved in plants' growth and developmental processes, including seed germination, root initiation, fruit ripening, flower and leaf senescence, abscission, and stress responses. Ethylene biosynthesis (EB) gene analysis in response to nitrogen (N) and potassium (K) stress has not yet been conducted in Musa acuminata (banana) roots. The genome mining of banana (Musa acuminata L.) revealed 14 putative 1-aminocyclopropane-1-carboxylate synthase (ACS), 10 1-aminocyclopropane-1-carboxylate oxidase (ACO), and 3 Ethylene overproducer 1 (ETO1) genes. ACS, ACO, and ETO1 proteins possessed amino acid residues ranging from 422-684, 636-2670, and 893-969, respectively, with molecular weight (Mw) ranging from 4.93-7.55 kD, 10.1-8.3 kD and 10.1-10.78 kD. The number of introns present in ACS, ACO, and ETO1 gene sequences ranges from 0-14, 1-6, and 0-6, respectively. The cis-regulatory element analysis revealed the presence of light-responsive, abscisic acid, seed regulation, auxin-responsive, gibberellin element, endosperm-specific, anoxic inducibility, low-temperature responsiveness, salicylic acid responsiveness, meristem-specific and stress-responsive elements. Comprehensive phylogenetic analyses ACS, ACO, and ETO1 genes of Banana with Arabidopsis thaliana revealed several orthologs and paralogs assisting in understanding the putative functions of these genes. The expression profile of Musa acuminata genes in root under normal and low levels of nitrogen and potassium shows that MaACS14 and MaACO6 expressed highly at normal nitrogen supply. MaACS1 expression was significantly upregulated at low potassium levels, whereas, MaACO6 gene expression was significantly downregulated. The functional divergence and site-specific selective pressures on specific gene sequences of banana have been investigated. The bioinformatics-based genome-wide assessment of the family of banana attempted in the present study could be a significant step for deciphering novel ACS, ACO, and ETO1 genes based on genome-wide expression profiling.
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Affiliation(s)
- Nosheen Tabassum
- Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan
| | - Muhammad Shafiq
- Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan.
| | - Sameen Fatima
- Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan
| | - Sana Tahir
- Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan
| | - Bushra Tabassum
- School of Biological Sciences, University of the Punjab New Campus, Lahore, Pakistan
| | - Qurban Ali
- Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan.
| | - Muhammad Arshad Javed
- Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab New Campus, Lahore, Pakistan
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Li H, Ma X, Wang W, Zhang J, Liu Y, Yuan D. Enhancing the accumulation of linoleic acid and α-linolenic acid through the pre-harvest ethylene treatment in Camellia oleifera. FRONTIERS IN PLANT SCIENCE 2023; 14:1080946. [PMID: 36909386 PMCID: PMC9999010 DOI: 10.3389/fpls.2023.1080946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 02/14/2023] [Indexed: 06/18/2023]
Abstract
Camellia oleifera Abel. (C. oleifera) is an important woody edible oil tree species in China. The quality of C. oleifera oil (tea oil) is mainly determined by the contents of linoleic acid (LA) and α-linolenic acid (ALA). However, how to increase the contents of LA and ALA in tea oil and the corresponding regulating mechanism have not been clarified. In the present study, we found that the LA and ALA contents in C. oleifera seeds were significant positively associated with the concentrations of ethephon and were decreased by ethylene inhibitor treatment. Furthermore, 1.5 g L-1 ethephon could receive an optimal LA and ALA contents without adverse effects to the growth of 'Huashuo' trees in this study. The ethephon treatment also increased the contents of 1-aminocyclopropane-1-carboxylic acid (ACC), sucrose, soluble sugar and reducing sugar contents in seeds. Transcriptome analysis further suggested that exogenous ethephon application enhanced the accumulation of LA and ALA via regulating genes involved in LA and ALA metabolism, plant hormone signal transduction pathways, and starch and sucrose metabolism. Our findings confirm the role of ethylene in LA and ALA regulation and provide new insights into the potential utilization of ethylene as a LA and ALA inducer in C. oleifera cultivation.
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Affiliation(s)
| | | | | | | | | | - Deyi Yuan
- *Correspondence: Xiaoling Ma, ; Deyi Yuan,
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Ye C, He Z, Peng J, Wang R, Wang X, Fu M, Zhang Y, Wang A, Liu Z, Jia G, Chen Y, Tian B. Genomic and genetic advances of oiltea-camellia ( Camellia oleifera). FRONTIERS IN PLANT SCIENCE 2023; 14:1101766. [PMID: 37077639 PMCID: PMC10106683 DOI: 10.3389/fpls.2023.1101766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 03/22/2023] [Indexed: 05/03/2023]
Abstract
Oiltea-camellia (C. oleifera) is a widely cultivated woody oil crop in Southern China and Southeast Asia. The genome of oiltea-camellia was very complex and not well explored. Recently, genomes of three oiltea-camellia species were sequenced and assembled, multi-omic studies of oiltea-camellia were carried out and provided a better understanding of this important woody oil crop. In this review, we summarized the recent assembly of the reference genomes of oiltea-camellia, genes related to economic traits (flowering, photosynthesis, yield and oil component), disease resistance (anthracnose) and environmental stress tolerances (drought, cold, heat and nutrient deficiency). We also discussed future directions of integrating multiple omics for evaluating genetic resources and mining key genes of important traits, and the application of new molecular breeding and gene editing technologies to accelerate the breeding process of oiltea-camellia.
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Affiliation(s)
- Changrong Ye
- Academy of Innovation and Research, Huazhi Biotechnology Co. Ltd., Changsha, China
| | - Zhilong He
- Research Institute of Oil Tea Camellia, Hunan Academy of Forestry, Changsha, China
| | - Jiayu Peng
- Academy of Innovation and Research, Huazhi Biotechnology Co. Ltd., Changsha, China
| | - Rui Wang
- Research Institute of Oil Tea Camellia, Hunan Academy of Forestry, Changsha, China
| | - Xiangnan Wang
- Research Institute of Oil Tea Camellia, Hunan Academy of Forestry, Changsha, China
| | - Mengjiao Fu
- Department of Research and Development, Mountain Yuelu Breeding Innovation Center, Changsha, China
| | - Ying Zhang
- Research Institute of Oil Tea Camellia, Hunan Academy of Forestry, Changsha, China
| | - Ai Wang
- Department of Research and Development, Mountain Yuelu Breeding Innovation Center, Changsha, China
| | - Zhixian Liu
- Department of Research and Development, Mountain Yuelu Breeding Innovation Center, Changsha, China
| | - Gaofeng Jia
- Academy of Innovation and Research, Huazhi Biotechnology Co. Ltd., Changsha, China
- Department of Research and Development, Mountain Yuelu Breeding Innovation Center, Changsha, China
- *Correspondence: Gaofeng Jia, ; Yongzhong Chen, ; Bingchuan Tian,
| | - Yongzhong Chen
- Research Institute of Oil Tea Camellia, Hunan Academy of Forestry, Changsha, China
- *Correspondence: Gaofeng Jia, ; Yongzhong Chen, ; Bingchuan Tian,
| | - Bingchuan Tian
- Academy of Innovation and Research, Huazhi Biotechnology Co. Ltd., Changsha, China
- Department of Research and Development, Mountain Yuelu Breeding Innovation Center, Changsha, China
- *Correspondence: Gaofeng Jia, ; Yongzhong Chen, ; Bingchuan Tian,
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Cai Y, Meng J, Cui Y, Tian M, Shi Z, Wang J. Transcriptome and targeted hormone metabolome reveal the molecular mechanisms of flower abscission in camellia. FRONTIERS IN PLANT SCIENCE 2022; 13:1076037. [PMID: 36618654 PMCID: PMC9813748 DOI: 10.3389/fpls.2022.1076037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION Camellia is among the most ornamentally valuable flowers and plants worldwide. Flower abscission typically causes significant financial losses by the horticultural landscape. Previous research has revealed that phytohormones, transcription factors, and other genes involved in floral development regulate the maintenance and mortality of flowers. METHODS In this study, for the first time, the transcriptomes and targeted hormone metabolomics of three developmental stages of the receptacles of two distinct camellia strains (CF: abscission strain, CHF: nonabscission strain) were analyzed to determine their roles in regulating blossom abscission in camellia. RESULTS ABA content was shown to be considerably upregulated throughout all phases of CF development, as were the genes implicated in the ABA production pathway and their downstream counterparts. Highly expressed genes in CF were involved in galactose metabolism, phenylpropanoid biosynthesis, amino and nucleotide sugar metabolism, pentose and glucuronate interconversions, and MAPK. Among others, highly expressed genes in CHF are associated with fructose and mannose metabolism, alpha-linolenic acid metabolism, biosynthesis of secondary metabolites, starch and sucrose metabolism, and cutin, suberin, and wax biosynthesis. A vast variety of stress response-related pathways and redox-related activities were also shown to be active in CHF. In contrast, CF dramatically activated pathways associated with lignin production, keratinogenesis, cell wall biogenesis, and ABA response. A comparative transcriptomic study of the CF and CHF pathways revealed that the downstream response pathways of hormones, including CTK, BR, IAA, ethylene, and GA, were very active in CF, indicating a significant amount of signal transduction and transcriptional regulation by CF. In addition, members of the transcription factor family, such as MYB, bHLH, MADS, and WD40, may regulate flower abscission. DISCUSSION A comparative transcriptome analysis of two distinct strains of camellia receptacles elucidates the molecular processes and regulatory characteristics of flower abscission and provides direction for the targeted improvement and breeding of camellia.
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Affiliation(s)
- Yanfei Cai
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- National Engineering Research Center for Ornamental Horticulture, Kunming, Yunnan, China
| | - Jing Meng
- College of Horticulture and Landscape, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Yinshan Cui
- Yunnan Pulis Biotechnology Co. Ltd., Kunming, Yunnan, China
| | - Min Tian
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- National Engineering Research Center for Ornamental Horticulture, Kunming, Yunnan, China
| | - Ziming Shi
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- National Engineering Research Center for Ornamental Horticulture, Kunming, Yunnan, China
| | - Jihua Wang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- National Engineering Research Center for Ornamental Horticulture, Kunming, Yunnan, China
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Quan W, Wang A, Gao C, Li C. Applications of Chinese Camellia oleifera and its By-Products: A Review. Front Chem 2022; 10:921246. [PMID: 35685348 PMCID: PMC9171030 DOI: 10.3389/fchem.2022.921246] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 05/05/2022] [Indexed: 11/13/2022] Open
Abstract
Camellia oleifera is a woody oil tree species unique to China that has been cultivated and used in China for more than 2,300 years. Most biological research on C. oleifera in recent years has focused on the development of new varieties and breeding. Novel genomic information has been generated for C. oleifera, including a high-quality reference genome at the chromosome level. Camellia seeds are used to process high-quality edible oil; they are also often used in medicine, health foods, and daily chemical products and have shown promise for the treatment and prevention of diseases. C. oleifera by-products, such as camellia seed cake, saponin, and fruit shell are widely used in the daily chemical, dyeing, papermaking, chemical fibre, textile, and pesticide industries. C. oleifera shell can also be used to prepare activated carbon electrodes, which have high electrochemical performance when used as the negative electrode of lithium-ion batteries. C. oleifera is an economically valuable plant with diverse uses, and accelerating the utilization of its by-products will greatly enhance its industrial value.
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Affiliation(s)
- Wenxuan Quan
- Guizhou Provincial Key Laboratory for Information Systems of Mountainous Areas and Protection of Ecological Environment, Guizhou Normal University, Guiyang, China.,Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang, China
| | - Anping Wang
- Guizhou Provincial Key Laboratory for Information Systems of Mountainous Areas and Protection of Ecological Environment, Guizhou Normal University, Guiyang, China
| | - Chao Gao
- Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang, China
| | - Chaochan Li
- Guizhou Provincial Key Laboratory for Information Systems of Mountainous Areas and Protection of Ecological Environment, Guizhou Normal University, Guiyang, China
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