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Furuta K, Byrne J, Luat K, Cheung C, Carter DO, Tipton L, Perrault Uptmor KA. Volatile organic compounds produced during postmortem processes can be linked via chromatographic profiles to individual postmortem bacterial species. J Chromatogr A 2024; 1728:465017. [PMID: 38797136 DOI: 10.1016/j.chroma.2024.465017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/20/2024] [Accepted: 05/21/2024] [Indexed: 05/29/2024]
Abstract
Decomposition odor is produced during postmortem mammalian tissue breakdown by bacteria, insects, and intrinsic chemical processes. Past research has not thoroughly investigated which volatile organic compounds (VOCs) can be linked directly to individual bacterial species on decomposing remains. The purpose of this study was to profile the VOCs produced over time by individual species of bacteria using comprehensive two-dimensional gas chromatography (GC×GC) to expand our foundational knowledge of what each bacterial species contributes to decomposition odor. Five different species of bacteria (Bacillus subtilis, Ignatzschineria indica, Ignatzschineria ureiclastica, Curtobacterium luteum, and Vagococcus lutrae) were cultured on standard nutrient agar individually and monitored daily using solid phase microextraction arrow (SPME Arrow) and GC×GC in combination with quadrupole mass spectrometry (qMS) and flame ionization detection (FID). The GC×GC-qMS/FID approach was used to generate rich VOC profiles that represented the bacterial species' metabolic VOC production longitudinally. The data obtained from the chromatographic output was used to compare with a prior study using one-dimensional GC-qMS, and also between each of the five species to investigate the extent of overlap between species. No single VOC could be found in all five bacterial species investigated, and there was little overlap in the profile between species. To further visualize these differences, chromatographic peak data was investigated using two different ordination strategies, principal component analysis (PCA) and principal coordinate analysis (PCoA). The two ordination strategies were compared with each other using a Procrustes analysis. This was performed to understand differences in ordination strategies between the separation science community and chemical ecological community. Overall, ordination strategies were found to produce similar results, as evidenced by the correlation of PCA and PCoA in the Procrustes analysis. All analysis strategies yielded distinct VOC profiles for each species. Further study of additional species will support understanding of the holistic view of decomposition odor from a chemical ecology perspective, and further support our understanding of the production of decomposition odor that culminates from such a complex environment.
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Affiliation(s)
- Kyle Furuta
- Laboratory of Forensic and Bioanalytical Chemistry, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States
| | - Julianne Byrne
- Laboratory of Forensic and Bioanalytical Chemistry, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States
| | - Kawailani Luat
- School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States
| | - Cynthia Cheung
- Laboratory of Forensic and Bioanalytical Chemistry, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States
| | - David O Carter
- Laboratory of Forensic Taphonomy, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States
| | - Laura Tipton
- School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States; Departments of Biology and Mathematics & Statistics, James Madison University, United States
| | - Katelynn A Perrault Uptmor
- Laboratory of Forensic and Bioanalytical Chemistry, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, United States; Nontargeted Separations Laboratory, Department of Chemistry, William & Mary, United States.
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McIntyre DB, Dawson BM, Long BM, Barton PS. A review of multi-disciplinary decomposition research and key drivers of variation in decay. Int J Legal Med 2024:10.1007/s00414-024-03222-2. [PMID: 38622312 DOI: 10.1007/s00414-024-03222-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 03/22/2024] [Indexed: 04/17/2024]
Abstract
The decomposition of animal remains is a multifaceted process, involving ecological, biological, and chemical interactions. While the complexity is acknowledged through concepts like the necrobiome, it's unclear if this complexity is reflected in research. Appreciation of the complexity of decomposition is crucial for identifying sources of variation in estimations of time since death in medico-legal science, as well as building broader ecological knowledge of the decomposition process. To gain insights into the extent of multidisciplinary research in the field of decomposition science, we conducted an examination of peer-reviewed literature on four key drivers of variation: volatile organic compounds, microbes, drugs/toxins, and insects. Among 650 articles, we identified their scientific discipline, driver/s of variation investigated, and year of publication. We found that 19% explored relationships between two drivers, while only 4% investigated interactions between three. None considered all four drivers. Over the past three decades, there has been a steady increase in decomposition research publications, signifying its growing importance. Most research (79%) was linked to forensic science, highlighting opportunities for interdisciplinary collaboration in decomposition science. Overall, our review underscores the need to incorporate multidisciplinary approaches and theory into contemporary decomposition research.
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Affiliation(s)
- Donna B McIntyre
- Future Regions Research Centre, Federation University, Mount Helen, VIC, 3350, Australia.
- Graduate Research School, Federation University, Mount Helen, VIC, 3350, Australia.
| | - Blake M Dawson
- School of Environmental and Rural Science, University of New England, Armidale, NSW, 2350, Australia
| | - Benjamin M Long
- Future Regions Research Centre, Federation University, Mount Helen, VIC, 3350, Australia
| | - Philip S Barton
- Future Regions Research Centre, Federation University, Mount Helen, VIC, 3350, Australia
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, 3216, Australia
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Strickland MS, Lynch L. Decomposer communities are universal in death. Nat Microbiol 2024; 9:585-586. [PMID: 38347105 DOI: 10.1038/s41564-023-01576-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Affiliation(s)
| | - Laurel Lynch
- Department of Soil & Water Systems, University of Idaho, Moscow, ID, USA
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Dawson BM, Ueland M, Carter DO, Mclntyre D, Barton PS. Bridging the gap between decomposition theory and forensic research on postmortem interval. Int J Legal Med 2024; 138:509-518. [PMID: 37491634 PMCID: PMC10861637 DOI: 10.1007/s00414-023-03060-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Accepted: 07/05/2023] [Indexed: 07/27/2023]
Abstract
Knowledge of the decomposition of vertebrate animals has advanced considerably in recent years and revealed complex interactions among biological and environmental factors that affect rates of decay. Yet this complexity remains to be fully incorporated into research or models of the postmortem interval (PMI). We suggest there is both opportunity and a need to use recent advances in decomposition theory to guide forensic research and its applications to understanding the PMI. Here we synthesise knowledge of the biological and environmental factors driving variation in decomposition and the acknowledged limitations among current models of the PMI. To guide improvement in this area, we introduce a conceptual framework that highlights the multiple interdependencies affecting decay rates throughout the decomposition process. Our framework reinforces the need for a multidisciplinary approach to PMI research, and calls for an adaptive research cycle that aims to reduce uncertainty in PMI estimates via experimentation, modelling, and validation.
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Affiliation(s)
- Blake M Dawson
- School of Environmental and Rural Science, University of New England, Armidale, NSW, 2350, Australia.
| | - Maiken Ueland
- Centre for Forensic Science, School of Mathematical and Physical Sciences, University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - David O Carter
- Forensic Sciences Unit, School of Natural Sciences & Mathematics, Chaminade University of Honolulu, Honolulu, HI, 96822, USA
| | - Donna Mclntyre
- Graduate Research School, Federation University, Mount Helen, Ballarat, VIC, 3350, Australia
- Future Regions Research Centre, Federation University, Mount Helen, Ballarat, VIC, 3350, Australia
| | - Philip S Barton
- Future Regions Research Centre, Federation University, Mount Helen, Ballarat, VIC, 3350, Australia
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, 3216, Australia
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Bartel SL, Stephenson T, Crowder DW, Jones ME, Storfer A, Strickland MS, Lynch L. Global change influences scavenging and carrion decomposition. Trends Ecol Evol 2024; 39:152-164. [PMID: 37816662 DOI: 10.1016/j.tree.2023.09.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 09/06/2023] [Accepted: 09/11/2023] [Indexed: 10/12/2023]
Abstract
Carrion decomposition is fundamental to nutrient cycling in terrestrial ecosystems because it provides a high-quality resource to diverse organisms. A conceptual framework incorporating all phases of carrion decomposition with the full community of scavengers is needed to predict the effects of global change on core ecosystem processes. Because global change can differentially impact scavenger guilds and rates of carrion decomposition, our framework explicitly incorporates complex interactions among microbial, invertebrate, and vertebrate scavenger communities across three distinct phases of carcass decomposition. We hypothesize that carrion decomposition rates will be the most impacted when global change affects carcass discovery rates and the foraging behavior of competing scavenger guilds.
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Affiliation(s)
- Savannah L Bartel
- Department of Entomology, Washington State University, 166 FSHN, 100 Dairy Road, Pullman, WA 99164, USA; School of Biological Sciences, Washington State University, 301 Abelson Hall, Pullman, WA 99164, USA.
| | - Torrey Stephenson
- Department of Soil and Water Systems, University of Idaho, 875 Perimeter Drive, Moscow, ID 83844, USA
| | - David W Crowder
- Department of Entomology, Washington State University, 166 FSHN, 100 Dairy Road, Pullman, WA 99164, USA
| | - Menna E Jones
- School of Natural Sciences, University of Tasmania, Life Sciences Building, Hobart, TAS 7001, Australia
| | - Andrew Storfer
- School of Biological Sciences, Washington State University, 301 Abelson Hall, Pullman, WA 99164, USA
| | - Michael S Strickland
- Department of Soil and Water Systems, University of Idaho, 875 Perimeter Drive, Moscow, ID 83844, USA
| | - Laurel Lynch
- Department of Soil and Water Systems, University of Idaho, 875 Perimeter Drive, Moscow, ID 83844, USA
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Schwegmann S, Binder N, von Hoermann C, Bhardwaj M, Storch I. Evisceration residues from hunted roe deer as a resource for necrophagous insect fauna in the Black Forest, Germany: a preliminary study. WILDLIFE BIOLOGY 2022. [DOI: 10.1002/wlb3.01055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Nikolas Binder
- Chair of Wildlife Ecology and Management, Univ. of Freiburg Freiburg Germany
| | - Christian von Hoermann
- Chair of Wildlife Ecology and Management, Univ. of Freiburg Freiburg Germany
- Dept of Conservation and Research, Bavarian Forest National Park Grafenau Germany
| | - Manisha Bhardwaj
- Chair of Wildlife Ecology and Management, Univ. of Freiburg Freiburg Germany
| | - Ilse Storch
- Chair of Wildlife Ecology and Management, Univ. of Freiburg Freiburg Germany
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von Hoermann C, Weithmann S, Sikorski J, Nevo O, Szpila K, Grzywacz A, Grunwald JE, Reckel F, Overmann J, Steiger S, Ayasse M. Linking bacteria, volatiles and insects on carrion: the role of temporal and spatial factors regulating inter-kingdom communication via volatiles. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220555. [PMID: 36061525 PMCID: PMC9428529 DOI: 10.1098/rsos.220555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 08/10/2022] [Indexed: 06/15/2023]
Abstract
Multi-kingdom community complexity and the chemically mediated dynamics between bacteria and insects have recently received increased attention in carrion research. However, the strength of these inter-kingdom interactions and the factors that regulate them are poorly studied. We used 75 piglet cadavers across three forest regions to survey the relationship between three actors (epinecrotic bacteria, volatile organic compounds (VOCs) and flies) during the first 4 days of decomposition and the factors that regulate this interdependence. The results showed a dynamic bacterial change during decomposition (temperature-time index) and across the forest management gradient, but not between regions. Similarly, VOC emission was dynamic across a temperature-time index and the forest management gradient but did not differ between regions. However, fly occurrence was dynamic across both space and time. The strong interdependence between the three actors was mainly regulated by the temperature-time index and the study regions, thereby revealing regulation at temporal and spatial scales. Additionally, the actor interdependence was stable across a gradient of forest management intensity. By combining different actors of decomposition, we have expanded our knowledge of the holistic mechanisms regulating carrion community dynamics and inter-kingdom interactions, an important precondition for better describing food web dynamics and entire ecosystem functions.
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Affiliation(s)
- Christian von Hoermann
- Department of Conservation and Research, Bavarian Forest National Park, Grafenau, Germany
| | - Sandra Weithmann
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Ulm, Germany
| | - Johannes Sikorski
- Department of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
| | - Omer Nevo
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Ulm, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University, Jena, Germany
| | - Krzysztof Szpila
- Department of Ecology and Biogeography, Nicolaus Copernicus University, Torun, Poland
| | - Andrzej Grzywacz
- Department of Ecology and Biogeography, Nicolaus Copernicus University, Torun, Poland
| | - Jan-Eric Grunwald
- Bavarian State Criminal Police Office, SG 204, Microtraces/Biology, 80636 Munich, Germany
| | - Frank Reckel
- Bavarian State Criminal Police Office, SG 204, Microtraces/Biology, 80636 Munich, Germany
| | - Jörg Overmann
- Department of Microbial Ecology and Diversity Research, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
| | - Sandra Steiger
- Department of Evolutionary Animal Ecology, University of Bayreuth, Bayreuth, Germany
| | - Manfred Ayasse
- Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, Ulm, Germany
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