Quantifying uncertainty in partially specified biological models: how can optimal control theory help us?

No sensitivity to functional forms in the Rosenzweig-MacArthur model with strong environmental stochasticity

The classic Rosenzweig-MacArthur predator-prey model has been shown to exhibit, like other coupled nonlinear ordinary differential equations (ODEs) from ecology, worrying sensitivity to model structure. This sensitivity manifests as markedly different community dynamics arising from saturating functional responses with nearly identical shapes but different mathematical expressions. Using a stochastic differential equation (SDE) version of the Rosenzweig-MacArthur model with the three functional responses considered by Fussmann & Blasius (2005), I show that such sensitivity seems to be solely a property of ODEs or stochastic systems with weak noise. SDEs with strong environmental noise have by contrast very similar fluctuations patterns, irrespective of the mathematical formula used. Although eigenvalues of linearized predator-prey models have been used as an argument for structural sensitivity, they can also be an argument against structural sensitivity. While the sign of the eigenvalues' real part is sensitive to model structure, its magnitude and the presence of imaginary parts are not, which suggests noise-driven oscillations for a broad range of carrying capacities. I then discuss multiple other ways to evaluate structural sensitivity in a stochastic setting, for predator-prey or other ecological systems.

Generalized Structural Kinetic Modeling: A Survey and Guide

Many current challenges involve understanding the complex dynamical interplay between the constituents of systems. Typically, the number of such constituents is high, but only limited data sources on them are available. Conventional dynamical models of complex systems are rarely mathematically tractable and their numerical exploration suffers both from computational and data limitations. Here we review generalized modeling, an alternative approach for formulating dynamical models to gain insights into dynamics and bifurcations of uncertain systems. We argue that this approach deals elegantly with the uncertainties that exist in real world data and enables analytical insight or highly efficient numerical investigation. We provide a survey of recent successes of generalized modeling and a guide to the application of this modeling approach in future studies such as complex integrative ecological models.