1
|
Woodruff GC, Willis JH, Phillips PC. Patterns of Genomic Diversity in a Fig-Associated Close Relative of Caenorhabditis elegans. Genome Biol Evol 2024; 16:evae020. [PMID: 38302111 PMCID: PMC10883733 DOI: 10.1093/gbe/evae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/03/2024] Open
Abstract
The evolution of reproductive mode is expected to have profound impacts on the genetic composition of populations. At the same time, ecological interactions can generate close associations among species, which can in turn generate a high degree of overlap in their spatial distributions. Caenorhabditis elegans is a hermaphroditic nematode that has enabled extensive advances in developmental genetics. Caenorhabditis inopinata, the sister species of C. elegans, is a gonochoristic nematode that thrives in figs and obligately disperses on fig wasps. Here, we describe patterns of genomic diversity in C. inopinata. We performed RAD-seq on individual worms isolated from the field across three Okinawan island populations. C. inopinata is about five times more diverse than C. elegans. Additionally, C. inopinata harbors greater differences in diversity among functional genomic regions (such as between genic and intergenic sequences) than C. elegans. Conversely, C. elegans harbors greater differences in diversity between high-recombining chromosome arms and low-recombining chromosome centers than C. inopinata. FST is low among island population pairs, and clear population structure could not be easily detected among islands, suggesting frequent migration of wasps between islands. These patterns of population differentiation appear comparable with those previously reported in its fig wasp vector. These results confirm many theoretical population genetic predictions regarding the evolution of reproductive mode and suggest C. inopinata population dynamics may be driven by wasp dispersal. This work sets the stage for future evolutionary genomic studies aimed at understanding the evolution of sex as well as the evolution of ecological interactions.
Collapse
Affiliation(s)
- Gavin C Woodruff
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
- Present address: Department of Biology, University of Oklahoma, Norman, OK 73019, USA
| | - John H Willis
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Patrick C Phillips
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| |
Collapse
|
2
|
Liu X, Yang Y, Fan Q, Zhang Q, Ji Q. Effect of Ultraviolet-B Radiating Drosophila melanogaster as Host on the Quality of Trichopria drosophilae, a Pupal Parasitoid of Drosophila suzukii. INSECTS 2023; 14:insects14050423. [PMID: 37233051 DOI: 10.3390/insects14050423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 04/21/2023] [Accepted: 04/27/2023] [Indexed: 05/27/2023]
Abstract
The pupal parasitoid, Trichopria drosophilae Perkins (Hymenoptera: Diapriidae), is an ectoparasitoid of the genus Drosophila with great potential for application in biological control based on its excellent control efficiency for Drosophila suzukii Matsumura (Diptera: Drosophilidae), and it has has even been commercialized by biofactories. Due to its characteristics of short life cycle, large number of offspring, easy rearing, rapid reproduction, and low cost, Drosophila melanogaster (Diptera: Drosophilidae) is currently being utilized as a host to mass produce T. drosophilae. To simplify the mass rearing process and omit the separation of hosts and parasitoids, ultraviolet-B (UVB) was used as an irradiation source to irradiate D. melanogaster pupae, and the effects on T. drosophilae were studied. The results showed that UVB radiation significantly reduces host emergence and affects the duration of parasitoid development (female: F0 increased from 21.50 to 25.80, F1 from 23.10 to 26.10; male: F0 decreased from 17.00 to 14.10, F1 from 17.20 to 14.70), which has great significance for the separation of hosts and parasitoids as well as of females and males. Of the various studied conditions, UVB irradiation was ideal when the host was supplied with parasitoids for 6 h. The selection test results showed that the female-to-male ratio of emerging parasitoids in this treatment was highest at 3.47. The no-selection test resulted in the highest rates of parasitization and parasitoid emergence rate, maximized inhibition of host development, and allowed the omission of the separation step. Finally, the results of the semi-field test showed that the parasitoids bred in this treatment could search for their hosts normally and could therefore be directly applied in the biological control of Drosophila pests in the field.
Collapse
Affiliation(s)
- Xuxiang Liu
- Biological Control Research Institute, Plant Protection College, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- China Fruit Fly Research and Control Center of FAO/IAEA, Fuzhou 350002, China
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou 350002, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fuzhou 350002, China
| | - Yongbang Yang
- Biological Control Research Institute, Plant Protection College, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- China Fruit Fly Research and Control Center of FAO/IAEA, Fuzhou 350002, China
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou 350002, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fuzhou 350002, China
| | - Qingwen Fan
- Biological Control Research Institute, Plant Protection College, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- China Fruit Fly Research and Control Center of FAO/IAEA, Fuzhou 350002, China
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou 350002, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fuzhou 350002, China
| | - Qinyuan Zhang
- Biological Control Research Institute, Plant Protection College, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- China Fruit Fly Research and Control Center of FAO/IAEA, Fuzhou 350002, China
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou 350002, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fuzhou 350002, China
| | - Qinge Ji
- Biological Control Research Institute, Plant Protection College, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- China Fruit Fly Research and Control Center of FAO/IAEA, Fuzhou 350002, China
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, Fuzhou 350002, China
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fuzhou 350002, China
| |
Collapse
|
3
|
Al-Yazeedi T, Xu EL, Kaur J, Shakes DC, Pires-daSilva A. Lagging X chromatids specify the orientation of asymmetric organelle partitioning in XX spermatocytes of Auanema rhodensis. Genetics 2022; 222:6762860. [PMID: 36255260 PMCID: PMC9713428 DOI: 10.1093/genetics/iyac159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 10/13/2022] [Indexed: 12/14/2022] Open
Abstract
The unequal partitioning of molecules and organelles during cell division results in daughter cells with different fates. An extreme example is female meiosis, in which consecutive asymmetric cell divisions give rise to 1 large oocyte and 2 small polar bodies with DNA and minimal cytoplasm. Here, we test the hypothesis that during an asymmetric cell division during spermatogenesis of the nematode Auanema rhodensis, the late segregating X chromatids orient the asymmetric partitioning of cytoplasmic components. In previous studies, the secondary spermatocytes of wild-type XO males were found to divide asymmetrically to generate functional spermatids that inherit components necessary for sperm viability and DNA-containing residual bodies that inherit components to be discarded. Here we extend that analysis to 2 novel contexts. First, the isolation and analysis of a strain of mutant XX pseudomales revealed that such animals have highly variable patterns of X-chromatid segregation. The pattern of late segregating X chromatids nevertheless predicted the orientation of organelle partitioning. Second, while wild-type XX hermaphrodites were known to produce both 1X and 2X sperm, here, we show that spermatocytes within specific spermatogonial clusters exhibit 2 different patterns of X-chromatid segregation that correlate with distinct patterns of organelle partitioning. Together this analysis suggests that A. rhodensis has coopted lagging X chromosomes during anaphase II as a mechanism for determining the orientation of organelle partitioning.
Collapse
Affiliation(s)
| | | | - Jasmin Kaur
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK
| | - Diane C Shakes
- Corresponding author: Department of Biology, William & Mary, Williamsburg, VA 23187, USA. (DCS)
| | - Andre Pires-daSilva
- Corresponding author: School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK (AP-dS)
| |
Collapse
|