Echo state network models for nonlinear Granger causality

MetaCAE: Causal autoencoder with meta-knowledge transfer for brain effective connectivity estimation

Using machine learning methods to estimate brain effective connectivity networks from functional magnetic resonance imaging (fMRI) data has gradually become one of the hot subjects in the fields of neuroscience. In particular, the encoder-decoder based methods can effectively extract the connections in fMRI time series, which have achieved promising performance. However, these methods generally use Granger causality model, which may identify false directions due to the non-stationary characteristic of fMRI data. Additionally, fMRI datasets have limited sample sizes, which significantly constrains the development of these methods. In this paper, we propose a novel brain effective connectivity estimation method based on causal autoencoder with meta-knowledge transfer, called MetaCAE. The proposed approach employs a causal autoencoder (CAE) to extract causal dependencies from non-stationary fMRI time series, and leverages meta-knowledge transfer to improve the estimation accuracy on small-sample data. More specifically, MetaCAE first employs a temporal convolutional encoder to extract non-stationary temporal information from fMRI time series. Then it uses a structural equation model-based decoder to decode causal relationships between brain regions. Finally, it utilizes a model-agnostic meta-learning method to learn the meta-knowledge of the shared brain effective connectivity among different subjects, and transfers the meta-knowledge to the CAE to enhance its estimation ability on small-sample fMRI data. Comprehensive experiments on both simulated and real-world data demonstrate the efficacy of MetaCAE in estimating brain effective connectivity.

Patient-clinician brain concordance underlies causal dynamics in nonverbal communication and negative affective expressivity

Patient-clinician concordance in behavior and brain activity has been proposed as a potential key mediator of mutual empathy and clinical rapport in the therapeutic encounter. However, the specific elements of patient-clinician communication that may support brain-to-brain concordance and therapeutic alliance are unknown. Here, we investigated how pain-related, directional facial communication between patients and clinicians is associated with brain-to-brain concordance. Patient-clinician dyads interacted in a pain-treatment context, during synchronous assessment of brain activity (fMRI hyperscanning) and online video transfer, enabling face-to-face social interaction. In-scanner videos were used for automated individual facial action unit (AU) time-series extraction. First, an interpretable machine-learning classifier of patients' facial expressions, from an independent fMRI experiment, significantly distinguished moderately painful leg pressure from innocuous pressure stimuli. Next, we estimated neural-network causality of patient-to-clinician directional information flow of facial expressions during clinician-initiated treatment of patients' evoked pain. We identified a leader-follower relationship in which patients predominantly led the facial communication while clinicians responded to patients' expressions. Finally, analyses of dynamic brain-to-brain concordance showed that patients' mid/posterior insular concordance with the clinicians' anterior insula cortex, a region identified in previously published data from this study¹, was associated with therapeutic alliance, and self-reported and objective (patient-to-clinician-directed causal influence) markers of negative-affect expressivity. These results suggest a role of patient-clinician concordance of the insula, a social-mirroring and salience-processing brain node, in mediating directional dynamics of pain-directed facial communication during therapeutic encounters.

Advanced computation in cardiovascular physiology: new challenges and opportunities

Recent developments in computational physiology have successfully exploited advanced signal processing and artificial intelligence tools for predicting or uncovering characteristic features of physiological and pathological states in humans. While these advanced tools have demonstrated excellent diagnostic capabilities, the high complexity of these computational 'black boxes' may severely limit scientific inference, especially in terms of biological insight about both physiology and pathological aberrations. This theme issue highlights current challenges and opportunities of advanced computational tools for processing dynamical data reflecting autonomic nervous system dynamics, with a specific focus on cardiovascular control physiology and pathology. This includes the development and adaptation of complex signal processing methods, multivariate cardiovascular models, multiscale and nonlinear models for central-peripheral dynamics, as well as deep and transfer learning algorithms applied to large datasets. The width of this perspective highlights the issues of specificity in heartbeat-related features and supports the need for an imminent transition from the black-box paradigm to explainable and personalized clinical models in cardiovascular research. This article is part of the theme issue 'Advanced computation in cardiovascular physiology: new challenges and opportunities'.