Unified framework for localized patterns in reaction-diffusion systems; the Gray-Scott and Gierer-Meinhardt cases

Analytical detection of stationary and dynamic patterns in a prey-predator model with reproductive Allee effect in prey growth

Allee effect in population dynamics has a major impact in suppressing the paradox of enrichment through global bifurcation, and it can generate highly complex dynamics. The influence of the reproductive Allee effect, incorporated in the prey's growth rate of a prey-predator model with Beddington-DeAngelis functional response, is investigated here. Preliminary local and global bifurcations are identified of the temporal model. Existence and non-existence of heterogeneous steady-state solutions of the spatio-temporal system are established for suitable ranges of parameter values. The spatio-temporal model satisfies Turing instability conditions, but numerical investigation reveals that the heterogeneous patterns corresponding to unstable Turing eigenmodes act as a transitory pattern. Inclusion of the reproductive Allee effect in the prey population has a destabilising effect on the coexistence equilibrium. For a range of parameter values, various branches of stationary solutions including mode-dependent Turing solutions and localized pattern solutions are identified using numerical bifurcation technique. The model is also capable to produce some complex dynamic patterns such as travelling wave, moving pulse solution, and spatio-temporal chaos for certain range of parameters and diffusivity along with appropriate choice of initial conditions. Judicious choices of parametrization for the Beddington-DeAngelis functional response help us to infer about the resulting patterns for similar prey-predator models with Holling type-II functional response and ratio-dependent functional response.

Emergence of collapsed snaking related dark and bright Kerr dissipative solitons with quartic-quadratic dispersion

We theoretically investigate the dynamics, bifurcation structure, and stability of dark localized states emerging in Kerr cavities in the presence of positive second- and fourth-order dispersion. In this previously unexplored regime, dark states form through the locking of uniform wave fronts, or domain walls, connecting two coexisting stable uniform states, and undergo a generic bifurcation structure known as collapsed homoclinic snaking. We characterize the robustness of these states by computing their stability and bifurcation structure as a function of the main control parameter of the system. Furthermore, we show that by increasing the dispersion of fourth order, bright localized states can be also stabilized.

Transitions between dissipative localized structures in the simplified Gilad-Meron model for dryland plant ecology

Spatially extended patterns and multistability of possible different states are common in many ecosystems, and their combination has an important impact on their dynamical behaviors. One potential combination involves tristability between a patterned state and two different uniform states. Using a simplified version of the Gilad-Meron model for dryland ecosystems, we study the organization, in bifurcation terms, of the localized structures arising in tristable regimes. These states are generally related to the concept of wave front locking and appear in the form of spots and gaps of vegetation. We find that the coexistence of localized spots and gaps, within tristable configurations, yields the appearance of hybrid states. We also study the emergence of spatiotemporal localized states consisting of a portion of a periodic pattern embedded in a uniform Hopf-like oscillatory background in a subcritical Turing-Hopf dynamical regime.

Introduction to 'Recent progress and open frontiers in Turing's theory of morphogenesis'

Elucidating pattern forming processes is an important problem in the physical, chemical and biological sciences. Turing's contribution, after being initially neglected, eventually catalysed a huge amount of work from mathematicians, physicists, chemists and biologists aimed towards understanding how steady spatial patterns can emerge from homogeneous chemical mixtures due to the reaction and diffusion of different chemical species. While this theory has been developed mathematically and investigated experimentally for over half a century, many questions still remain unresolved. This theme issue places Turing's theory of pattern formation in a modern context, discussing the current frontiers in foundational aspects of pattern formation in reaction-diffusion and related systems. It highlights ongoing work in chemical, synthetic and developmental settings which is helping to elucidate how important Turing's mechanism is for real morphogenesis, while highlighting gaps that remain in matching theory to reality. The theme issue also surveys a variety of recent mathematical research pushing the boundaries of Turing's original theory to more realistic and complicated settings, as well as discussing open theoretical challenges in the analysis of such models. It aims to consolidate current research frontiers and highlight some of the most promising future directions. This article is part of the theme issue 'Recent progress and open frontiers in Turing's theory of morphogenesis'.

Modern perspectives on near-equilibrium analysis of Turing systems

In the nearly seven decades since the publication of Alan Turing's work on morphogenesis, enormous progress has been made in understanding both the mathematical and biological aspects of his proposed reaction-diffusion theory. Some of these developments were nascent in Turing's paper, and others have been due to new insights from modern mathematical techniques, advances in numerical simulations and extensive biological experiments. Despite such progress, there are still important gaps between theory and experiment, with many examples of biological patterning where the underlying mechanisms are still unclear. Here, we review modern developments in the mathematical theory pioneered by Turing, showing how his approach has been generalized to a range of settings beyond the classical two-species reaction-diffusion framework, including evolving and complex manifolds, systems heterogeneous in space and time, and more general reaction-transport equations. While substantial progress has been made in understanding these more complicated models, there are many remaining challenges that we highlight throughout. We focus on the mathematical theory, and in particular linear stability analysis of 'trivial' base states. We emphasize important open questions in developing this theory further, and discuss obstacles in using these techniques to understand biological reality. This article is part of the theme issue 'Recent progress and open frontiers in Turing's theory of morphogenesis'.