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Hoffman AJ, Temmerman W, Campbell E, Damin AA, Lezcano-Gonzalez I, Beale AM, Bordiga S, Hofkens J, Van Speybroeck V. A Critical Assessment on Calculating Vibrational Spectra in Nanostructured Materials. J Chem Theory Comput 2024; 20:513-531. [PMID: 38157404 PMCID: PMC10809426 DOI: 10.1021/acs.jctc.3c00942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 11/30/2023] [Accepted: 12/05/2023] [Indexed: 01/03/2024]
Abstract
Vibrational spectroscopy is an omnipresent spectroscopic technique to characterize functional nanostructured materials such as zeolites, metal-organic frameworks (MOFs), and metal-halide perovskites (MHPs). The resulting experimental spectra are usually complex, with both low-frequency framework modes and high-frequency functional group vibrations. Therefore, theoretically calculated spectra are often an essential element to elucidate the vibrational fingerprint. In principle, there are two possible approaches to calculate vibrational spectra: (i) a static approach that approximates the potential energy surface (PES) as a set of independent harmonic oscillators and (ii) a dynamic approach that explicitly samples the PES around equilibrium by integrating Newton's equations of motions. The dynamic approach considers anharmonic and temperature effects and provides a more genuine representation of materials at true operating conditions; however, such simulations come at a substantially increased computational cost. This is certainly true when forces and energy evaluations are performed at the quantum mechanical level. Molecular dynamics (MD) techniques have become more established within the field of computational chemistry. Yet, for the prediction of infrared (IR) and Raman spectra of nanostructured materials, their usage has been less explored and remain restricted to some isolated successes. Therefore, it is currently not a priori clear which methodology should be used to accurately predict vibrational spectra for a given system. A comprehensive comparative study between various theoretical methods and experimental spectra for a broad set of nanostructured materials is so far lacking. To fill this gap, we herein present a concise overview on which methodology is suited to accurately predict vibrational spectra for a broad range of nanostructured materials and formulate a series of theoretical guidelines to this purpose. To this end, four different case studies are considered, each treating a particular material aspect, namely breathing in flexible MOFs, characterization of defects in the rigid MOF UiO-66, anharmonic vibrations in the metal-halide perovskite CsPbBr3, and guest adsorption on the pores of the zeolite H-SSZ-13. For all four materials, in their guest- and defect-free state and at sufficiently low temperatures, both the static and dynamic approach yield qualitatively similar spectra in agreement with experimental results. When the temperature is increased, the harmonic approximation starts to fail for CsPbBr3 due to the presence of anharmonic phonon modes. Also, the spectroscopic fingerprints of defects and guest species are insufficiently well predicted by a simple harmonic model. Both phenomena flatten the potential energy surface (PES), which facilitates the transitions between metastable states, necessitating dynamic sampling. On the basis of the four case studies treated in this Review, we can propose the following theoretical guidelines to simulate accurate vibrational spectra of functional solid-state materials: (i) For nanostructured crystalline framework materials at low temperature, insights into the lattice dynamics can be obtained using a static approach relying on a few points on the PES and an independent set of harmonic oscillators. (ii) When the material is evaluated at higher temperatures or when additional complexity enters the system, e.g., strong anharmonicity, defects, or guest species, the harmonic regime breaks down and dynamic sampling is required for a correct prediction of the phonon spectrum. These guidelines and their illustrations for prototype material classes can help experimental and theoretical researchers to enhance the knowledge obtained from a lattice dynamics study.
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Affiliation(s)
| | - Wim Temmerman
- Center
for Molecular Modeling, Ghent University, 9000 Ghent, Belgium
| | - Emma Campbell
- Cardiff
Catalysis Institute, Cardiff University, Cardiff CF10 3AT, United Kingdom
- Research
Complex at Harwell, Didcot OX11 0FA, United
Kingdom
| | | | - Ines Lezcano-Gonzalez
- Research
Complex at Harwell, Didcot OX11 0FA, United
Kingdom
- Department
of Chemistry, University College London, London WC1E 6BT, United Kingdom
| | - Andrew M. Beale
- Research
Complex at Harwell, Didcot OX11 0FA, United
Kingdom
- Department
of Chemistry, University College London, London WC1E 6BT, United Kingdom
| | - Silvia Bordiga
- Department
of Chemistry, University of Turin, 10124 Turin, Italy
| | - Johan Hofkens
- Department
of Chemistry, KU Leuven, 3000 Leuven, Belgium
- Max Planck
Institute for Polymer Research, 55128 Mainz, Germany
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Van Speybroeck V. Following the dynamics of industrial catalysts under operando conditions. Proc Natl Acad Sci U S A 2024; 121:e2319800121. [PMID: 38150478 PMCID: PMC10786296 DOI: 10.1073/pnas.2319800121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2023] Open
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Millan R, Bello-Jurado E, Moliner M, Boronat M, Gomez-Bombarelli R. Effect of Framework Composition and NH 3 on the Diffusion of Cu + in Cu-CHA Catalysts Predicted by Machine-Learning Accelerated Molecular Dynamics. ACS CENTRAL SCIENCE 2023; 9:2044-2056. [PMID: 38033797 PMCID: PMC10683499 DOI: 10.1021/acscentsci.3c00870] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Indexed: 12/02/2023]
Abstract
Cu-exchanged zeolites rely on mobile solvated Cu+ cations for their catalytic activity, but the role of the framework composition in transport is not fully understood. Ab initio molecular dynamics simulations can provide quantitative atomistic insight but are too computationally expensive to explore large length and time scales or diverse compositions. We report a machine-learning interatomic potential that accurately reproduces ab initio results and effectively generalizes to allow multinanosecond simulations of large supercells and diverse chemical compositions. Biased and unbiased simulations of [Cu(NH3)2]+ mobility show that aluminum pairing in eight-membered rings accelerates local hopping and demonstrate that increased NH3 concentration enhances long-range diffusion. The probability of finding two [Cu(NH3)2]+ complexes in the same cage, which is key for SCR-NOx reaction, increases with Cu content and Al content but does not correlate with the long-range mobility of Cu+. Supporting experimental evidence was obtained from reactivity tests of Cu-CHA catalysts with a controlled chemical composition.
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Affiliation(s)
- Reisel Millan
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts 02139, United States
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Estefanía Bello-Jurado
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Manuel Moliner
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Mercedes Boronat
- Instituto
de Tecnología Química, Universitat
Politècnica de València-Consejo Superior de Investigaciones
Científicas, Avenida de los Naranjos s/n, 46022 Valencia, Spain
| | - Rafael Gomez-Bombarelli
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts 02139, United States
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Van Speybroeck V, Bocus M, Cnudde P, Vanduyfhuys L. Operando Modeling of Zeolite-Catalyzed Reactions Using First-Principles Molecular Dynamics Simulations. ACS Catal 2023; 13:11455-11493. [PMID: 37671178 PMCID: PMC10476167 DOI: 10.1021/acscatal.3c01945] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 07/27/2023] [Indexed: 09/07/2023]
Abstract
Within this Perspective, we critically reflect on the role of first-principles molecular dynamics (MD) simulations in unraveling the catalytic function within zeolites under operating conditions. First-principles MD simulations refer to methods where the dynamics of the nuclei is followed in time by integrating the Newtonian equations of motion on a potential energy surface that is determined by solving the quantum-mechanical many-body problem for the electrons. Catalytic solids used in industrial applications show an intriguing high degree of complexity, with phenomena taking place at a broad range of length and time scales. Additionally, the state and function of a catalyst critically depend on the operating conditions, such as temperature, moisture, presence of water, etc. Herein we show by means of a series of exemplary cases how first-principles MD simulations are instrumental to unravel the catalyst complexity at the molecular scale. Examples show how the nature of reactive species at higher catalytic temperatures may drastically change compared to species at lower temperatures and how the nature of active sites may dynamically change upon exposure to water. To simulate rare events, first-principles MD simulations need to be used in combination with enhanced sampling techniques to efficiently sample low-probability regions of phase space. Using these techniques, it is shown how competitive pathways at operating conditions can be discovered and how broad transition state regions can be explored. Interestingly, such simulations can also be used to study hindered diffusion under operating conditions. The cases shown clearly illustrate how first-principles MD simulations reveal insights into the catalytic function at operating conditions, which could not be discovered using static or local approaches where only a few points are considered on the potential energy surface (PES). Despite these advantages, some major hurdles still exist to fully integrate first-principles MD methods in a standard computational catalytic workflow or to use the output of MD simulations as input for multiple length/time scale methods that aim to bridge to the reactor scale. First of all, methods are needed that allow us to evaluate the interatomic forces with quantum-mechanical accuracy, albeit at a much lower computational cost compared to currently used density functional theory (DFT) methods. The use of DFT limits the currently attainable length/time scales to hundreds of picoseconds and a few nanometers, which are much smaller than realistic catalyst particle dimensions and time scales encountered in the catalysis process. One solution could be to construct machine learning potentials (MLPs), where a numerical potential is derived from underlying quantum-mechanical data, which could be used in subsequent MD simulations. As such, much longer length and time scales could be reached; however, quite some research is still necessary to construct MLPs for the complex systems encountered in industrially used catalysts. Second, most currently used enhanced sampling techniques in catalysis make use of collective variables (CVs), which are mostly determined based on chemical intuition. To explore complex reactive networks with MD simulations, methods are needed that allow the automatic discovery of CVs or methods that do not rely on a priori definition of CVs. Recently, various data-driven methods have been proposed, which could be explored for complex catalytic systems. Lastly, first-principles MD methods are currently mostly used to investigate local reactive events. We hope that with the rise of data-driven methods and more efficient methods to describe the PES, first-principles MD methods will in the future also be able to describe longer length/time scale processes in catalysis. This might lead to a consistent dynamic description of all steps-diffusion, adsorption, and reaction-as they take place at the catalyst particle level.
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Affiliation(s)
| | - Massimo Bocus
- Center for Molecular Modeling, Ghent University, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Pieter Cnudde
- Center for Molecular Modeling, Ghent University, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Louis Vanduyfhuys
- Center for Molecular Modeling, Ghent University, Technologiepark 46, 9052 Zwijnaarde, Belgium
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Catlow CRA, De Leeuw NH, Michaelides A, Woodley SM. Supercomputing modelling of advanced materials: preface. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023; 381:20220252. [PMID: 37211036 PMCID: PMC10200345 DOI: 10.1098/rsta.2022.0252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 04/13/2023] [Indexed: 05/23/2023]
Affiliation(s)
- C. Richard A. Catlow
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK
- School of Chemistry, Cardiff University, Park Place, Cardiff CF10 1AT, UK
| | | | - Angelos Michaelides
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Scott M. Woodley
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK
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