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Olowo-Okere A, Ibrahim YKE, Lo CI, Olayinka BO, Yimagou EK, Yacouba A, Mohammed Y, Nabti LZ, Ragueh AA, Lupande D, Raoult D, Rolain JM, Diene SM. Bhargavaea massiliensis sp. nov. and Dietzia massiliensis sp. nov., Novel Bacteria Species Isolated from Human Urine Samples in Nigeria. Curr Microbiol 2021; 79:18. [PMID: 34905116 DOI: 10.1007/s00284-021-02721-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 10/13/2021] [Indexed: 10/19/2022]
Abstract
Two novel bacteria species designated Marseille-Q1000T and Marseille-Q0999T were isolated from urine samples of patients in Sokoto, Northwest-Nigeria. They were Gram-positive bacteria and belong to two different genera, Bhargavaea and Dietzia. The genome size and G + C content of Marseille-Q1000T and Marseille-Q0999T were 3.07 and 3.51 Mbp with 53.8 and 71.0 mol% G + C content, respectively. The strains exhibited unique phenotypic and genomic features that are substantially different from previously known bacterial species with standing in nomenclature. On the basis of the phenotypic, phylogenetic and genomic characteristics, strains Marseille-Q0999T (= CSURQ0999 = DSM 112394) and Marseille-Q1000T (= CSURQ1000 = DSM 112384) were proposed as the type strains of Bhargavaea massiliensis sp. nov., and Dietzia massiliensis sp. nov., respectively.
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Affiliation(s)
- Ahmed Olowo-Okere
- Department of Pharmaceutics and Pharmaceutical Microbiology, Usmanu Danfodiyo University, Sokoto, Nigeria
| | | | - Cheikh Ibrahima Lo
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Busayo Olalekan Olayinka
- Department of Pharmaceutics and Pharmaceutical Microbiology, Ahmadu Bello University, Zaria, Nigeria
| | - Edmond Kuete Yimagou
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Abdourahamane Yacouba
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Yahaya Mohammed
- Department of Medical Microbiology, Faculty of Basic Medical Sciences, College of Health Sciences, Usmanu Danfodiyo University, Sokoto, Nigeria
| | - Larbi Zakaria Nabti
- Faculté des Sciences, Département de Biochimie et Microbiologie, Université Mohamed Boudiaf, BP 166, 28000, M'sila, M'sila, Algeria
| | - Ayan Ali Ragueh
- Department of Medical Microbiology, Faculty of Basic Medical Sciences, College of Health Sciences, Usmanu Danfodiyo University, Sokoto, Nigeria
| | - David Lupande
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | | | - Jean-Marc Rolain
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Seydina M Diene
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France. .,Institut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France.
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Tian FH, Fan DY, Zhang C, Jia CW, Gao W, Li Y, Li CT. Bhargavaea changchunensis sp. nov. isolated from soil in China. Arch Microbiol 2018; 200:1465-1470. [PMID: 30151776 DOI: 10.1007/s00203-018-1563-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 08/12/2018] [Accepted: 08/20/2018] [Indexed: 11/26/2022]
Abstract
A Gram-staining-positive, aerobic, rod-shaped (201802YP6T) bacteria was isolated from soil, Northeast of China. Growth occurred at 10-40 °C (optimum 25-30 °C), at pH 6.0-8.0 (optimum 7.0) and at 0-2% NaCl. Based on 16S rRNA gene sequence analysis, the nearest phylogenetic neighbors of strain 201802YP6T were identified as Bhargavaea cecembensis DSE10T (99.52%), Bhargavaea beijingensis ge10T (99.45%), Bhargavaea indica KJW98T (99.45%), Bhargavaea ullalensis ZMA19T (98.81%), and Bhargavaea ginsengi ge14T (98.76%). Levels of similarity among strain 201802YP6T and other Bhargavaea species were lower than 98.76%. GyrB amino acid sequence-based analysis supported the phylogenetic position and also distinguished strain 201802YP6T from the other species of the genus Bhargavaea. DNA-DNA hybridization values between strain 201802YP6T and B. cecembensis, B. beijingensis, B. indica, B. ullalensis, B. ginsengi were 43.5%, 43%, 32.5%, 30.5% and 20.4%, respectively. The DNA G + C content of strain 201802YP6T was 51.23 mol%. The average nucleotide identity (ANI) of the draft genome was 87.04% to B. cecembensis DSE10T. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, glycolipids, phosphatidylethanolamine, and phosphatidyllipid. The predominant menaquinone was MK-8. The major fatty acids were iso-C15:0 (39.91%), anteiso-C15:0 (28.86%), anteiso-C17:0 (6.30%) and C16:0 (6.13%). On the basis of the phylogenetic analysis, chemotaxonomic data, physiological characteristics and DNA-DNA hybridization data, strain 201802YP6T represents a novel species of the genus Bhargavaea, for which the name Bhargavaea changchunensis sp. nov. is proposed. The type strain is 201802YP6T (= CGMCC 1.13508T = KCTC 33975T).
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Affiliation(s)
- Feng-Hua Tian
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China
| | - Dong-Yu Fan
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China
| | - Chen Zhang
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China
| | - Chuan-Wen Jia
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China
| | - Wei Gao
- Tonghua Edible Fungus Cultivation Cooperatives, Tonghua, 134100, People's Republic of China
| | - Yu Li
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China.
| | - Chang-Tian Li
- Engineering Research Center of Edible and Medicinal Fungi, Jilin Agricultural University, Ministry of Education, Changchun, 130118, People's Republic of China.
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