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Swanson K, Blakeslee AMH, Fowler AE, Roozbehi S, Field EK. Microbial communities are indicators of parasite infection status. Environ Microbiol 2023; 25:3423-3434. [PMID: 37918974 DOI: 10.1111/1462-2920.16533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 10/20/2023] [Indexed: 11/04/2023]
Abstract
Growing evidence suggests that microbiomes have been shaping the evolutionary pathways of macroorganisms for millennia and that these tiny symbionts can influence, and possibly even control, species interactions like host-parasite relationships. Yet, while studies have investigated host-parasites and microbiomes separately, little has been done to understand all three groups synergistically. Here, we collected infected and uninfected Eurypanopeus depressus crab hosts from a coastal North Carolina oyster reef three times over 4 months. Infected crabs demonstrated an external stage of the rhizocephalan parasite, Loxothylacus panopaei. Community analyses revealed that microbial richness and diversity were significantly different among tissue types (uninfected crab, infected crab, parasite externae and parasite larvae) and over time (summer and fall). Specifically, the microbial communities from parasite externae and larvae had similar microbiomes that were consistent through time. Infected crabs demonstrated microbial communities spanning those of their host and parasite, while uninfected crabs showed more distinctive communities with greater variability over time. Microbial communities were also found to be indicators of early-stage infections. Resolving the microbial community composition of a host and its parasite is an important step in understanding the microbiome's role in the host-parasite relationship and determining how this tripartite relationship impacts coevolutionary processes.
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Affiliation(s)
- Kyle Swanson
- Department of Biology, East Carolina University, Greenville, North Carolina, USA
| | - April M H Blakeslee
- Department of Biology, East Carolina University, Greenville, North Carolina, USA
| | - Amy E Fowler
- Environmental Science & Policy Department, George Mason University, Fairfax, Virginia, USA
| | - Sara Roozbehi
- Department of Biology, East Carolina University, Greenville, North Carolina, USA
| | - Erin K Field
- Department of Biology, East Carolina University, Greenville, North Carolina, USA
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2
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Su X, Xu FQ, Chen SJ, Gou F, Shi YC, Xing ZL, Peng RQ, Deng YY, Zhang T, Xiong J, Zhao TT. Microecological health assessment of water environment and sediment based on metagenomics: a case study of Guixi River in Chongqing, China. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:970. [PMID: 37466699 DOI: 10.1007/s10661-023-11589-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 07/06/2023] [Indexed: 07/20/2023]
Abstract
River sediment is vital in containing water pollution and strengthening water remediation. This paper has conducted a study on the microecological health assessment of the sediment and water body of Guixi River in Dianjiang, Chongqing, China, using metagenomics sequencing and microbial biological integrity index (M-IBI) technology. The analysis of physical and chemical characteristics shows that the concentration of TN varies from 2.62 to 9.76 mg/L in each sampling section, and the eutrophication of the water body is relatively severe. The proportion of Cyanobacteria in the sampling section at the sink entrance is higher than that of other sites, where there are outbreaks of water blooms and potential hazards to human health. The dominant functions of each site include carbon metabolism, TCA cycle, and pyruvate metabolism. In addition, the main virulence factors and antibiotic resistance genes in sediment are Type IV pili (VF0082), LOS (CVF494), MymA operon (CVF649), and macrolide resistance genes macB, tetracyclic tetA (58), and novA. Correlation analysis of environmental factors and microorganisms was also performed, and it was discovered that Thiothrix and Acidovorax had obvious gene expression in the nitrogen metabolism pathway, and the Guixi River Basin had a self-purification capacity. Finally, based on the microecological composition of sediment and physical and chemical characteristics of the water body, the health assessment was carried out, indicating that the main pollution area was Dianjiang Middle School and the watershed near the sewage treatment plant. The findings should theoretically support an in-depth assessment of the water environment's microecological health.
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Affiliation(s)
- Xia Su
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Fu-Qing Xu
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Shang-Jie Chen
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Fang Gou
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Yun-Chun Shi
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Zhi-Lin Xing
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China.
| | - Ren-Qing Peng
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Ying-Ying Deng
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Ten Zhang
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Juan Xiong
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
| | - Tian-Tao Zhao
- School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing, 400054, China
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3
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URycki DR, Bassiouni M, Good SP, Crump BC, Li B. The streamwater microbiome encodes hydrologic data across scales. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 849:157911. [PMID: 35944633 DOI: 10.1016/j.scitotenv.2022.157911] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 07/15/2022] [Accepted: 08/04/2022] [Indexed: 05/20/2023]
Abstract
Many fundamental questions in hydrology remain unanswered due to the limited information that can be extracted from existing data sources. Microbial communities constitute a novel type of environmental data, as they are comprised of many thousands of taxonomically and functionally diverse groups known to respond to both biotic and abiotic environmental factors. As such, these microscale communities reflect a range of macroscale conditions and characteristics, some of which also drive hydrologic regimes. Here, we assess the extent to which streamwater microbial communities (as characterized by 16S gene amplicon sequence abundance) encode information about catchment hydrology across scales. We analyzed 64 summer streamwater DNA samples collected from subcatchments within the Willamette, Deschutes, and John Day river basins in Oregon, USA, which range 0.03-29,000 km2 in area and 343-2334 mm/year of precipitation. We applied information theory to quantify the breadth and depth of information about common hydrologic metrics encoded within microbial taxa. Of the 256 microbial taxa that spanned all three watersheds, we found 9.6 % (24.5/256) of taxa, on average, shared information with a given hydrologic metric, with a median 15.6 % (range = 12.4-49.2 %) reduction in uncertainty of that metric based on knowledge of the microbial biogeography. All of the hydrologic metrics we assessed, including daily discharge at different time lags, mean monthly discharge, and seasonal high and low flow durations were encoded within the microbial community. Summer microbial taxa shared the most information with winter mean flows. Our study demonstrates quantifiable relationships between streamwater microbial taxa and hydrologic metrics at different scales, likely resulting from the integration of multiple overlapping drivers of each. Streamwater microbial communities are rich sources of information that may contribute fresh insight to unresolved hydrologic questions.
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Affiliation(s)
- Dawn R URycki
- Water Resources Graduate Program, Oregon State University, USA; Department of Biological and Ecological Engineering, Oregon State University, USA; Department of Civil Engineering, University of Colorado Denver, USA.
| | - Maoya Bassiouni
- Department of Crop Production Ecology, Swedish University of Agricultural Sciences, Sweden; Department of Environmental Science, Policy, and Management, University of California Berkeley, USA
| | - Stephen P Good
- Water Resources Graduate Program, Oregon State University, USA; Department of Biological and Ecological Engineering, Oregon State University, USA
| | - Byron C Crump
- College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, USA
| | - Bonan Li
- Water Resources Graduate Program, Oregon State University, USA; Department of Biological and Ecological Engineering, Oregon State University, USA; Department of Biological and Agricultural Engineering, University of Arkansas, USA
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4
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Benthic Biofilm Bacterial Communities and Their Linkage with Water-Soluble Organic Matter in Effluent Receivers. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19041994. [PMID: 35206183 PMCID: PMC8872271 DOI: 10.3390/ijerph19041994] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 02/04/2022] [Accepted: 02/07/2022] [Indexed: 02/04/2023]
Abstract
Benthic biofilms are pioneering microbial aggregates responding to effluent discharge from wastewater treatment plants (WWTPs). However, knowledge of the characteristics and linkage of bacterial communities and water-soluble organic matter (WSOM) of benthic biofilms in effluent-receiving rivers remains unknown. Here, we investigated the quality of WSOM and the evolution of bacterial communities in benthic biofilm to evaluate the ecological impacts of effluent discharge on a representative receiving water. Tryptophan-like proteins showed an increased proportion in biofilms collected from the discharge area and downstream from the WWTP, especially in summer. Biofilm WSOM showed weak humic character and strong autochthonous components, and species turnover was proven to be the main factor governing biofilm bacteria community diversity patterns. The bacterial community alpha diversity, interspecies interaction, biological index, and humification index were signally altered in the biofilms from the discharge area, while the values were more similar in biofilms collected upstream and downstream from the WWTP, indicating that both biofilm bacterial communities and WSOM characters have resilience capacities. Although effluent discharge simplified the network pattern of the biofilm bacterial community, its metabolic functional abundance was basically stable. The functional abundance of carbohydrate metabolism and amino acid metabolism in the discharge area increased, and the key modules in the non-random co-occurrence network also verified the important ecological role of carbon metabolism in the effluent-receiving river. The study sheds light on how benthic biofilms respond to effluent discharge from both ecological and material points of view, providing new insights on the feasibility of utilizing benthic biofilms as robust indicators reflecting river ecological health.
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Moon K, Kim S, Kang I, Cho JC. Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea. Sci Data 2020; 7:349. [PMID: 33051444 PMCID: PMC7553992 DOI: 10.1038/s41597-020-00695-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 09/23/2020] [Indexed: 11/30/2022] Open
Abstract
A high number of viral metagenomes have revealed countless genomes of putative bacteriophages that have not yet been identified due to limitations in bacteriophage cultures. However, most virome studies have been focused on marine or gut environments, thereby leaving the viral community structure of freshwater lakes unclear. Because the lakes located around the globe have independent ecosystems with unique characteristics, viral community structures are also distinctive but comparable. Here, we present data on viral metagenomes that were seasonally collected at a depth of 1 m from Lake Soyang, the largest freshwater reservoir in South Korea. Through shotgun metagenome sequencing using the Illumina MiSeq platform, 3.08 to 5.54-Gbps of reads per virome were obtained. To predict the viral genome sequences within Lake Soyang, contigs were constructed and 648 to 1,004 putative viral contigs were obtained per sample. We expect that both viral metagenome reads and viral contigs would contribute in comparing and understanding of viral communities among different freshwater lakes depending on seasonal changes.
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Affiliation(s)
- Kira Moon
- Department of Biological Sciences, Inha University, Incheon, 22212, Republic of Korea
| | - Suhyun Kim
- Department of Biological Sciences, Inha University, Incheon, 22212, Republic of Korea
| | - Ilnam Kang
- Center for Molecular and Cell Biology, Inha University, Incheon, 22212, Republic of Korea.
| | - Jang-Cheon Cho
- Department of Biological Sciences, Inha University, Incheon, 22212, Republic of Korea.
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6
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Hu J, Zhao H, Wang Y, Yin Z, Kang Y. The bacterial community structures in response to the gut passage of earthworm (Eisenia fetida) feeding on cow dung and domestic sludge: Illumina high-throughput sequencing-based data analysis. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 190:110149. [PMID: 31901807 DOI: 10.1016/j.ecoenv.2019.110149] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 12/17/2019] [Accepted: 12/28/2019] [Indexed: 06/10/2023]
Abstract
Diets are shown to be capable of shaping the gut microbiota of earthworm, while the effects of distinct foods on bacterial communities of different digestive tracts of earthworm are unknown. For this purpose, cow dung (CD) and domestic sludge (DS) were chosen as diets for earthworms (Eisenia fetida), and different gut contents, namely gizzard + foregut area, hindgut, and mature vermi-compost were sampled for Illumina sequencing analysis. We found that there existed significant reductions in bacterial diversity and abundance in the gizzard + foregut area, where there were stable bacteria with the ability of biodegradation of xenobiotics, such as Amycolatopsis, Methylobacterium, Ralstonia, Ochrobactrum, and Sphingomonas. The decreases could be recovered in the hindgut and mature vermi-compost to different extents, suggesting that a bottleneck effect on the bacterial community occurred in the gizzard + foregut area. Beta-Proteobacteria was the most abundant subclass regardless of the different diets, and bacteria affiliated with gamma-, delta- and epsilon-subclasses were taken as food by the earthworms. Vermi-composts based on the various diets should be used differently according to different aims.
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Affiliation(s)
- Jian Hu
- Environmental Science & Engineering, Yangzhou University, Yangzhou, Jiangsu, PR China.
| | - Haitao Zhao
- Environmental Science & Engineering, Yangzhou University, Yangzhou, Jiangsu, PR China
| | - Yue Wang
- Environmental Science & Engineering, Yangzhou University, Yangzhou, Jiangsu, PR China
| | - Zhifeng Yin
- Institute of Resource Utilization of Agricultural Waste, Yancheng Teachers University, Yancheng, Jiangsu, PR China
| | - Yijun Kang
- Environmental Science & Engineering, Yangzhou University, Yangzhou, Jiangsu, PR China; Institute of Resource Utilization of Agricultural Waste, Yancheng Teachers University, Yancheng, Jiangsu, PR China.
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7
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The Effects of Antibiotics on Microbial Community Composition in an Estuary Reservoir during Spring and Summer Seasons. WATER 2018. [DOI: 10.3390/w10020154] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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8
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Huang K, Xu Y, Zhang J, Chen C, Gao F, Zhao FJ. Arsenicibacter rosenii gen. nov., sp. nov., an efficient arsenic methylating and volatilizing bacterium isolated from an arsenic-contaminated paddy soil. Int J Syst Evol Microbiol 2017; 67:3186-3191. [PMID: 28829026 DOI: 10.1099/ijsem.0.002068] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
A novel bacterium with strong arsenic (As) methylation and volatilization abilities, designated strain SM-1T, was isolated from an As-contaminated paddy soil. SM-1T is strictly aerobic, rod-shaped, non-motile, Gram-negative and orange-coloured. Phylogenetic analysis revealed that strain SM-1T showed low 16S rRNA gene sequence similarities (≤88 %) to members of established genera in the family Cytophagaceae. Growth of this strain was observed at 15-45 °C (optimum, 37 °C), pH 6.0-8.0 (optimum, 7.0) and 0-0.5 % (w/v) NaCl. The major cellular fatty acids were C16 : 1ω5c and iso-C15 : 0. The respiratory quinone was MK-7, and the predominant polar lipids were phosphatidylethanolamine, an unidentified lipid (L), and an unidentified aminolipid (AL2). The DNA G+C content was 51.5 mol%. On the basis of phenotypic, phylogenetic and chemotaxonomic properties, strain SM-1T represents a novel species in a new genus within the family Cytophagaceae, for which the name Arsenicibacter rosenii gen. nov., sp. nov. is proposed. The type strain of Arsenicibacter rosenii is SM-1T (=CCTCC AB 2017086T=KCTC 52624T).
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Affiliation(s)
- Ke Huang
- Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Yan Xu
- Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Jun Zhang
- Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Chuan Chen
- Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Fan Gao
- Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Fang-Jie Zhao
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK.,Jiangsu Key Laboratory for Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
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9
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Kang H, Kim H, Song J, Cho JC, Joh K, Joung Y. Lacihabitans lacunae sp. nov., isolated from a lagoon. Int J Syst Evol Microbiol 2017; 67:2509-2513. [PMID: 28809153 DOI: 10.1099/ijsem.0.001899] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A non-motile, orange-pigmented bacterium, designated strain HME7103T, was isolated from lagoon water in the Republic of Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HME7103T formed a lineage within the genus Lacihabitans and family Cytophagaceae. Strain HME7103T was closely related to Lacihabitans soyangensis HME6675T (95.7 % 16S rRNA gene sequence similarity). The major fatty acids of strain HME7103T were summed feature 3 (comprising C16 : 1ω7c and/or C16 : 1ω6c) and iso-C15 : 0. The major respiratory quinone was MK-7. The major polyamine was spermidine. The major polar lipids were phosphatidylethanolamine, two unidentified aminolipids, one unidentified aminophospholipid and three unidentified polar lipids. The DNA G+C content of strain HME7103T was 40.6 mol%. On the basis of the evidence presented in this study, strain HME7103T represents a novel species within the genus Lacihabitans, for which the name Lacihabitans lacunae sp. nov. is proposed. The type strain is HME7103T (=KCTC 23619T=CECT 7956T).
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Affiliation(s)
- Heeyoung Kang
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Haneul Kim
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Jaeho Song
- Department of Biological Science, Inha University, Incheon 22212, Republic of Korea
| | - Jang-Cheon Cho
- Department of Biological Science, Inha University, Incheon 22212, Republic of Korea
| | - Kiseong Joh
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Yochan Joung
- Department of Biological Science, Inha University, Incheon 22212, Republic of Korea
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10
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Li DD, Peng M, Wang N, Wang XJ, Zhang XY, Chen XL, Su HN, Zhang YZ, Shi M. Arcticibacterium luteifluviistationis gen. nov., sp. nov., isolated from Arctic seawater. Int J Syst Evol Microbiol 2017; 67:664-669. [PMID: 27902275 DOI: 10.1099/ijsem.0.001690] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-staining-negative, aerobic, non-motile and yellow-pigmented bacterium, designated strain SM1504T, was isolated from Arctic seawater. It hydrolysed aesculin and gelatin but did not reduce nitrate to nitrite. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain SM1504T constituted a distinct phylogenetic line within the family Cytophagaceae and was closely related to species of the genera Lacihabitans, Emticicia, Fluviimonas and Leadbetterella, with respect to which low sequence similarities between 88.9 and 91.6 % were observed. The major fatty acids of strain SM1504T were summed feature 3 (comprising C16 : 1ω7c and/or iso-C15 : 0 2-OH) and iso-C15 : 0. The predominant polar lipids of strain SM1504T were phosphatidylethanolamine and one unidentified lipid. The only respiratory quinone detected in strain SM1504T was MK7. The DNA G+C content of strain SM1504T was 40.8 mol%. On the basis of the phylogenetic, chemotaxonomic and phenotypic characterization in this study, strain SM1504T is considered to represent a novel species in a new genus of the family Cytophagaceae, for which the name Arcticibacterium luteifluviistationis gen. nov., sp. nov. is proposed. The type strain is SM1504T (=KCTC 42716T=CCTCC AB 2015348T).
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Affiliation(s)
- Dan-Dan Li
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Ming Peng
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Ning Wang
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Xiu-Juan Wang
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Xi-Ying Zhang
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Xiu-Lan Chen
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Hai-Nan Su
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Yu-Zhong Zhang
- State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.,Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China
| | - Mei Shi
- Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China.,State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China
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11
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Bacterial community structure within an activated sludge reactor added with phenolic compounds. Appl Microbiol Biotechnol 2016; 101:3405-3414. [DOI: 10.1007/s00253-016-8000-z] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Revised: 10/26/2016] [Accepted: 11/06/2016] [Indexed: 01/02/2023]
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12
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Liu Y, Du J, Lai Q, Dong C, Xie Y, Shao Z. Jiulongibacter sediminis gen. nov., sp. nov., a new member of the family Cytophagaceae, isolated from the surface sediment of the Jiulong River in China. Int J Syst Evol Microbiol 2016; 66:2347-2353. [DOI: 10.1099/ijsem.0.001038] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Yang Liu
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
| | - Juan Du
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
| | - Qiliang Lai
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
| | - Chunming Dong
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
| | - Yanrong Xie
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
| | - Zongze Shao
- State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; South China Sea Bio-Resource Exploitation and Utilization Collaborative Innovation Centre; Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China
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13
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Joung Y, Hong S, Kim H, Kang H, Farrance CE, Joh K. Taeseokella kangwonensis gen. nov., sp. nov., isolated from a freshwater reservoir. Int J Syst Evol Microbiol 2015; 65:4309-4314. [PMID: 26341781 DOI: 10.1099/ijsem.0.000582] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-negative, non-motile and yellow-pigmented bacterium, designated HME8275T, was isolated from freshwater in Korea. The major fatty acids of strain HME8275T were summed feature 3 (comprising C16 : 1ω6c and/or C16 : 1ω7c), C16 : 0 and iso-C15 : 0. The only respiratory quinone was MK-7. Polar lipid analysis showed phosphatidylethanolamine, two unidentified aminolipids, two unidentified aminophospholipids and three unidentified polar lipids. The DNA G+C content of strain HME8275T was 37.6 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HME8275T formed a lineage within the family Cytophagaceae and was related to Lacihabitans soyangensis HME6675T (92.6 % 16S rRNA gene sequence similarity), Leadbetterella byssophila 4M15T (89.0 %), Fluviimonas pallidilutea TQQ6T (89.7 %) and Emticicia oligotrophica GPTSA100-15T (89.8 %). On the basis of the evidence presented in this study, strain HME8275T represents a novel species of a new genus in the family Cytophagaceae, for which the name Taeseokella kangwonensis, gen. nov., sp. nov. is proposed. The type strain of the type species is HME8275T ( = KACC 16933T = CECT 8198T).
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Affiliation(s)
- Yochan Joung
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Geonggi 449-791, Republic of Korea.,Department of Biological Science, Inha University, Incheon 402-751, Republic of Korea
| | - Sunhee Hong
- Charles River Laboratories, Endotoxin and Microbial Detection, Newark, Delaware, USA
| | - Haneul Kim
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Geonggi 449-791, Republic of Korea
| | - Heeyoung Kang
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Geonggi 449-791, Republic of Korea
| | - Christine E Farrance
- Charles River Laboratories, Endotoxin and Microbial Detection, Newark, Delaware, USA
| | - Kiseong Joh
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Geonggi 449-791, Republic of Korea
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