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Huang T, Lai Q, Xiao L, Gong L, Shao Z, Wang H, Xu Y, Amils R, Escudero C, Martinez JM. Sediminibacillus dalangtanensis sp. nov., a moderate halophile isolated from hypersaline sediments of the Qaidam Basin in Northwest China. Int J Syst Evol Microbiol 2022; 71. [DOI: 10.1099/ijsem.0.005501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-positive, moderately halophilic, aerobic, endospore-forming, rod-shaped bacterium, designated strain DP4-553-ST, was isolated from hypersaline sediment collected from the Dalangtan Playa in the Qaidam Basin, Northwest PR China. Growth occurred within 0–21.6% (w/v) NaCl (optimum 7.2%) at pH 5.5–9.0 (optimum pH 7.0) and at 4–45 °C (optimum 37 °C). Phylogeny based on 16S rRNA gene sequences indicated that strain DP4-553-ST belonged to the genus
Sediminibacillus
, with high 16S rRNA gene sequence similarity to
Sediminibacillus halophilus
EN8dT (99.5 %),
Sediminibacillus terrae
JSM 102062T (99.4 %), Virgibacillus senegalensis SK-1T (99.3 %) and
Sediminibacillus albus
NHBX5T (98.3 %). The G+C content of the chromosomal DNA was 43.6 mol %. The average amino acid identity, average nucleotide identity and digital DNA–DNA hybridization values between strain DP4-553-ST and the four close type strains were 71.2–93.3, 74.0–90.5 and 20.0–41.4 %, respectively. The whole genomic analysis showed that strain DP4-553-ST constituted a different taxon separated from the recognized
Sediminibacillus
species. The major cellular fatty acids were anteiso-C15 : 0, anteiso-C17 : 0, iso-C16 : 0, C16 : 0 and iso-C15 : 0. The type strain contained cell-wall peptidoglycan based on diaminopimelic acid and possessed menaquinone-7 as the major respiratory isoprenoid quinone. The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, four unidentified glycolipids, phosphatidylcholine, aminophospholipid, aminolipid and seven unidentified phospholipids. The combined data from phenotypic and genotypic studies demonstrated that strain DP4-553-ST represents a novel species of the genus
Sediminibacillus
, for which the name Sediminibacillus dalangtanensis sp. nov. is proposed, the type strain is DP4-553-ST (=MCCC 1K03838T= KCTC 43250T).
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Affiliation(s)
- Ting Huang
- CNSA Macau Center for Space Exploration and Science, Taipa, 999078, Macao, PR China
- State Key Laboratory of Geological Process and Mineral Resources, Planetary Science Institute, China University of Geosciences, Wuhan, Hubei, PR China
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology, Taipa, 999078, Macao, PR China
| | - Qiliang Lai
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, PR China
| | - Long Xiao
- State Key Laboratory of Geological Process and Mineral Resources, Planetary Science Institute, China University of Geosciences, Wuhan, Hubei, PR China
| | - Linfeng Gong
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, PR China
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, PR China
| | - Hongmei Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, Hubei, PR China
| | - Yi Xu
- CNSA Macau Center for Space Exploration and Science, Taipa, 999078, Macao, PR China
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology, Taipa, 999078, Macao, PR China
| | - Ricardo Amils
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain
- Centro de Biología Molecular “Severo Ochoa” (UAM-CSIC), Madrid, Spain
| | - Cristina Escudero
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain
| | - José M. Martinez
- Centro de Biología Molecular “Severo Ochoa” (UAM-CSIC), Madrid, Spain
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Liu ZX, Chen JH, Yang LL, Feng YZ, Deng LY, He JW, Tang SK, Chen YG. Halomonas faecis sp. nov., a halophilic bacterium isolated from human faeces. Extremophiles 2022; 26:20. [PMID: 35716203 DOI: 10.1007/s00792-022-01269-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/12/2022] [Indexed: 02/05/2023]
Abstract
A novel moderately halophilic, Gram-stain-negative, catalase- and oxidase-positive, strictly aerobic, non-sporulating, non-motile rod, designated strain JSM 104105 T, was isolated from human faeces. Strain JSM 104105 T was able to grow with 0.5-18% (w/v) NaCl (optimum 4-9%), at pH 6-10.5 (optimum pH 7-8) and at 10-40 °C (optimum 30 °C) in complex media. The major cellular fatty acids were C18:1ω7c, C16:0, C16:1ω7c and/or C16:1ω6c, C19:0 cyclo ω8c and C12:0 3-OH. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminophospholipid, an unidentified glycolipid and three unidentified phospholipids. The predominant respiratory quinone was Q-9 and the genomic DNA G + C content was 64.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JSM 104105 T should be assigned to the genus Halomonas, and was most closely related to Halomonas gudaonensis SL014B-69 T (99.0% sequence similarity), followed by Halomonas azerbaijanica TBZ202T (98.6%) and Halomonas lysinitropha 3(2)T (97.3%). The whole genomic analysis showed that strain JSM 104105 T constituted a different taxon separated from the recognized Halomonas species. Combined data from phenotypic and genotypic studies demonstrated that strain JSM 104105 T represents a new species of the genus Halomonas, for which the name Halomonas faecis sp. nov. is proposed. The type strain is JSM 104105 T (= CCTCC AB 2014160 T = CGMCC 1.12945 T = KCTC 42146 T).
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Affiliation(s)
- Zhu-Xiang Liu
- College of Biology and Environmental Sciences, Jishou University, No.120, South Renmin Road, Jishou, 416000, China
| | - Jin-Hua Chen
- College of Biology and Environmental Sciences, Jishou University, No.120, South Renmin Road, Jishou, 416000, China.
| | - Ling-Ling Yang
- Key Laboratory for Conservation and Utilization of Bio-Resource, and Key Laboratory for Microbial Resources of the Ministry of Education, School of Life Sciences, Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, China
| | - Yu-Zhou Feng
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, 610065, China
| | - Li-Ying Deng
- College of Biology and Environmental Sciences, Jishou University, No.120, South Renmin Road, Jishou, 416000, China
| | - Jian-Wu He
- College of Biology and Environmental Sciences, Jishou University, No.120, South Renmin Road, Jishou, 416000, China
| | - Shu-Kun Tang
- Key Laboratory for Conservation and Utilization of Bio-Resource, and Key Laboratory for Microbial Resources of the Ministry of Education, School of Life Sciences, Yunnan Institute of Microbiology, Yunnan University, Kunming, 650091, China
| | - Yi-Guang Chen
- College of Biology and Environmental Sciences, Jishou University, No.120, South Renmin Road, Jishou, 416000, China.
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