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Wang Y, Liu Y, Li Y, Sun J, Lai Q, Zhu H, Zhou H. Pseudemcibacter aquimaris gen. nov., sp. nov., isolated from an aquaculture farm. Int J Syst Evol Microbiol 2022; 72. [DOI: 10.1099/ijsem.0.005327] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A rod-shaped, Gram-stain-negative, aerobic and non-motile bacterium, designated strain Y4T, was isolated from an aquaculture farm in Xiamen, PR China. Strain Y4T had 94.8, 93.3 and 91.8 % 16S rRNA gene sequence similarity to
Paremcibacter congregatus
ZYLT,
Emcibacter nanhaiensis
HTCJW17T and
Luteithermobacter gelatinilyticus
MEBiC09520T, respectively. The genomic DNA G+C content of strain Y4T was 42.7 mol%. The average amino acid identity and percentage of conserved proteins values between strain Y4T and type strains of the family
Emcibacteraceae
were 57.9–58.6 % and 44.5–47.6 %, respectively. Optimal growth was observed at 28 °C, at pH 7.0 and with 2 % (w/v) NaCl. The novel strain Y4T required Ca2+, K+ and Mg2+ ions in addition to NaCl for growth. The dominant fatty acids of strain Y4T were summed feature 3 (C16 : 1
ω7c/C16 : 1
ω6c), summed feature 8 (C18 : 1
ω7c/C18 : 1
ω6c) and C14 : 0 2-OH. The polar lipid profile contained phosphatidylethanolamine, phosphatidyglycerol, three unidentified aminolipids, four unidentified aminophospholipids and two unidentified lipids. Cells contained exclusively ubiquinone Q-10. On the basis of the polyphasic analysis, strain Y4T (=MCCC 1K06278T=KCTC 82926T) is considered to represent a novel species in a novel genus of the family
Emcibacteraceae
, for which the name Pseudemcibacter aquimaris gen. nov., sp. nov. is proposed.
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Affiliation(s)
- Yu Wang
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
| | - Yanbo Liu
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
| | - Yanyan Li
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
| | - Jia Sun
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
| | - Qiliang Lai
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, PR China
| | - Hongmei Zhu
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
| | - Hantao Zhou
- College of Ocean and Earth Sciences, Xiamen University, Xiamen, PR China
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, PR China
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Zheng ZQ, Chen MS, Yan XR, Tuo L. Pseudooceanicola endophyticus sp. nov., a novel endophytic bacterium isolated from bark Aegiceras corniculatum. Int J Syst Evol Microbiol 2021; 71. [PMID: 34596505 DOI: 10.1099/ijsem.0.005036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-negative, aerobic, short-rod-shaped bacterium, designated strain CBS1P-1T, was isolated from a surface-sterilized bark of Aegiceras corniculatum. Growth of strain CBS1P-1T was observed with between 0 and 12.0 % (w/v) NaCl (optimally with 5.0 %) and at between pH 6.0-9.0. It grew at temperatures between 25-37 °C (optimum, 30 °C). Chemotaxonomic analysis showed that ubiquinone-10 was the respiratory quinone. The lipids comprised diphosphatidylglycerol, phosphatidylglycerol, an unidentified glycolipid, an unidentified phospholipid and an unidentified aminolipid. The major fatty acids of strain CBS1P-1T were C18 : 1 ω7c, C16 : 0 and C19 : 0 cyclo ω8c. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain CBS1P-1T was most related to Pseudooceanicola antarcticus CGMCC 1.12662T with a sequence similarity of 96.5 %. The average nucleotide identity and digital DNA-DNA hybridization values between strain CBS1P-1T and P. antarcticus 1.12662T were 77.5 and 21.1 %, respectively. The G+C content of the genomic DNA was 67.3 mol%. Based on phylogenetic, chemotaxonomic and phenotypic data, strain CBS1P-1T is considered to represent a novel species of the genus Pseudooceanicola, for which the name Pseudooceanicola endophyticus is proposed. The type strain is CBS1P-1T (=KCTC 62836T=CGMCC 1.13743T).
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Affiliation(s)
- Zhou-Qing Zheng
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Ming-Sheng Chen
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Xiao-Rui Yan
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Li Tuo
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
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