The mechanism and control of the assembly of tobacco mosaic virus from its RNA and protein disks

The application of monoclonal antibodies in the study of viruses

This chapter discusses the applications of monoclonal antibodies in virology. A single monoclonal antibody can provide information on protein “relatedness,” structure, function, synthesis, processing, and cellular or tissue distribution and on the association among molecules. The use of monoclonal antibodies provides valuable insight into the working of the protein both as an enzyme and as a target for the host immune response, evolving in reaction to that response. Monoclonal antibodies find application in two main areas: (1) in the field of rapid diagnosis of virus disease in man, animals, and plants and (2) in the extension of virus taxonomy. Monoclonal antibodies may be used to analyze the role of a protein. This ability to distinguish related proteins can be used to provide a genetic marker in recombination experiments. Monoclonal antibodies can detect low amounts of individual virus proteins within the infected cell. They can, thus, provide information concerning the temporal and spatial separation of protein formation and accumulation, and data on protein modification and processing in the infected cell.

The structure of a DNA unwinding protein and its complexes with oligodeoxynucleotides by x-ray diffraction

The structure of the gene 5 DNA unwinding protein from bacteriophage fd has been solved to 2.3 A resolution by x-ray diffraction techniques. The molecule contains an extensive cleft region that we have identified as the DNA binding site on the basis of the residues that comprise its surface. The interior of the groove has a rather large number of basic amino acid residues that serve to draw the polynucleotide backbone into the cleft. Arrayed along the external edges of the groove are a number of aromatic amino acid side groups that are in position to stack upon the bases of the DNA and fix it in place. The cleft then acts as an elongated pair of jaws that draws the DNA between them by charge interactions involving the phosphates with the interior lysines and arginines. The jaws then close on the DNA strand through small conformation changes and the rotation of aromatic side-chains into position to stack upon the purines and pyrimidines. Complexes of the gene 5 protein with a variety of oligodeoxynucleotides have been formed and crystallized for x-ray diffraction analysis. The crystallographic parameters of four different unit cells indicate that the fundamental unit of the complex is composed of six gene 5 protein dimers. We believe this aggregate has 622 point group symmetry and is a ring formed by end to end closure of a linear array of six dimers. From our results we have proposed a double helical model for the gene 5 protein-DNA complex in which the protein forms a spindle or core around which the DNA is spooled. 5.0-A x-ray diffraction data from one of the crystalline complexes is currently being analyzed by molecular replacement techniques to obtain what we believe will be the first direct visualization of a protein-deoxyribonucleic acid complex approaching atomic resolution.

Preliminary molecular replacement results for a crystalline gene 4 protein-deoxyoligonucleotide complex

Complexes of the gene 5 protein from bacteriophage fd with a variety of oligodeoxynucleotides, ranging in length from two to eight and comprised of several different sequences, have been formed and crystallized for X-ray diffraction analysis. The crystallographic parameters of four different unit cells, all of which are based on hexagonal packing arrangements, indicate that the fundamental unit of the complex is composed of six gene 5 protein dimers. We believe this aggregate has 622 point group symmetry and is a ring formed by end-to-end closure of a linear array of six dimers. From our results we have proposed a double-helix model for the gene 5 protein-DNA complex in which the protein forms a spindle or core around which the DNA is spooled. Currently 5.0-A X-ray diffraction data from one of the crystalline complexes is being analyzed by molecular replacement techniques to obtain a direct image of the protein-nucleic acid complex.

Assembly of tobacco mosaic virus in vitro: effect of state of polymerization of the protein component

We previously proposed that the assembly of tobacco mosaic virus is initiated by disks of 34 protein subunits attaching to the RNA, after which the particle grows by the addition of further disks. Other workers have reported growth from "A-protein" instead. We now report experiments that confirm our previous results and show that the contrary findings are largely due to a nonequilibrium form of A-protein that has a "memory" for the disk state and rapidly reaggregates, either in solution or on the growing particle.