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For: Tanimura Y, Wolynes PG. Quantum and classical Fokker-Planck equations for a Gaussian-Markovian noise bath. Phys Rev A 1991;43:4131-4142. [PMID: 9905511 DOI: 10.1103/physreva.43.4131] [Citation(s) in RCA: 180] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Number Cited by Other Article(s)
1
Sharma D, Bose A. Impact of Loss Mechanisms on Linear Spectra of Excitonic and Polaritonic Aggregates. J Chem Theory Comput 2024;20:9522-9532. [PMID: 39401084 DOI: 10.1021/acs.jctc.4c00825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2024]
2
Cai X, Feng Y, Ren J, Peng Y, Zheng Y. Quantum decoherence dynamics in stochastically fluctuating environments. J Chem Phys 2024;161:044106. [PMID: 39041876 DOI: 10.1063/5.0217863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 07/08/2024] [Indexed: 07/24/2024]  Open
3
London N, Bu S, Johnson B, Ananth N. Mean-Field Ring Polymer Rates Using a Population Dividing Surface. J Phys Chem A 2024;128:5730-5739. [PMID: 38976564 DOI: 10.1021/acs.jpca.4c00005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
4
Koyanagi S, Tanimura Y. Classical and quantum thermodynamics described as a system-bath model: The dimensionless minimum work principle. J Chem Phys 2024;160:234112. [PMID: 38904216 DOI: 10.1063/5.0205771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 05/23/2024] [Indexed: 06/22/2024]  Open
5
Warman H, Slocombe L, Sacchi M. How proton transfer impacts hachimoji DNA. RSC Adv 2023;13:13384-13396. [PMID: 37143915 PMCID: PMC10152326 DOI: 10.1039/d3ra00983a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/23/2023] [Indexed: 05/06/2023]  Open
6
Prada A, Pós ES, Althorpe SC. Comparison of Matsubara dynamics with exact quantum dynamics for an oscillator coupled to a dissipative bath. J Chem Phys 2023;158:114106. [PMID: 36948794 DOI: 10.1063/5.0138250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023]  Open
7
Chen ZH, Wang Y, Xu RX, Yan Y. Open quantum systems with nonlinear environmental backactions: Extended dissipaton theory vs core-system hierarchy construction. J Chem Phys 2023;158:074102. [PMID: 36813728 DOI: 10.1063/5.0134700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
8
Takahashi H, Tanimura Y. Discretized hierarchical equations of motion in mixed Liouville-Wigner space for two-dimensional vibrational spectroscopies of liquid water. J Chem Phys 2023;158:044115. [PMID: 36725520 DOI: 10.1063/5.0135725] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
9
Fay TP. A simple improved low temperature correction for the hierarchical equations of motion. J Chem Phys 2022;157:054108. [DOI: 10.1063/5.0100365] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Xing T, Li T, Yan Y, Bai S, Shi Q. Application of the imaginary time hierarchical equations of motion method to calculate real time correlation functions. J Chem Phys 2022;156:244102. [DOI: 10.1063/5.0095790] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
11
Ikeda T, Nakayama A. Collective bath coordinate mapping of "hierarchy" in hierarchical equations of motion. J Chem Phys 2022;156:104104. [DOI: 10.1063/5.0082936] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
12
Computational Characterization of Nanosystems. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2111233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
13
Liu Y, Yan Y, Xing T, Shi Q. Understanding the Large Kinetic Isotope Effect of Hydrogen Tunneling in Condensed Phases by Using Double-Well Model Systems. J Phys Chem B 2021;125:5959-5970. [PMID: 34033714 DOI: 10.1021/acs.jpcb.1c02851] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Gelin MF, Borrelli R, Chen L. Hierarchical Equations-of-Motion Method for Momentum System-Bath Coupling. J Phys Chem B 2021;125:4863-4873. [PMID: 33929205 PMCID: PMC8279550 DOI: 10.1021/acs.jpcb.1c02431] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Cainelli M, Tanimura Y. Exciton transfer in organic photovoltaic cells: A role of local and nonlocal electron–phonon interactions in a donor domain. J Chem Phys 2021;154:034107. [DOI: 10.1063/5.0036590] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Tanimura Y. Numerically "exact" approach to open quantum dynamics: The hierarchical equations of motion (HEOM). J Chem Phys 2021;153:020901. [PMID: 32668942 DOI: 10.1063/5.0011599] [Citation(s) in RCA: 184] [Impact Index Per Article: 61.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
17
Sakamoto S, Tanimura Y. Numerically "exact" simulations of entropy production in the fully quantum regime: Boltzmann entropy vs von Neumann entropy. J Chem Phys 2020;153:234107. [PMID: 33353341 DOI: 10.1063/5.0033664] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Poudel H, Reid KM, Yamato T, Leitner DM. Energy Transfer across Nonpolar and Polar Contacts in Proteins: Role of Contact Fluctuations. J Phys Chem B 2020;124:9852-9861. [PMID: 33107736 DOI: 10.1021/acs.jpcb.0c08091] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
19
Zhang J, Borrelli R, Tanimura Y. Proton tunneling in a two-dimensional potential energy surface with a non-linear system–bath interaction: Thermal suppression of reaction rate. J Chem Phys 2020;152:214114. [DOI: 10.1063/5.0010580] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
20
Zhang HD, Cui L, Gong H, Xu RX, Zheng X, Yan Y. Hierarchical equations of motion method based on Fano spectrum decomposition for low temperature environments. J Chem Phys 2020;152:064107. [PMID: 32061227 DOI: 10.1063/1.5136093] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Erpenbeck A, Thoss M. Hierarchical quantum master equation approach to vibronic reaction dynamics at metal surfaces. J Chem Phys 2019;151:191101. [DOI: 10.1063/1.5128206] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Iwamoto Y, Tanimura Y. Open quantum dynamics of a three-dimensional rotor calculated using a rotationally invariant system-bath Hamiltonian: Linear and two-dimensional rotational spectra. J Chem Phys 2019;151:044105. [DOI: 10.1063/1.5108609] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Rahman H, Kleinekathöfer U. Chebyshev hierarchical equations of motion for systems with arbitrary spectral densities and temperatures. J Chem Phys 2019;150:244104. [PMID: 31255062 DOI: 10.1063/1.5100102] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
24
Ridley M, Gull E, Cohen G. Lead geometry and transport statistics in molecular junctions. J Chem Phys 2019;150:244107. [DOI: 10.1063/1.5096244] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Hartmann R, Werther M, Grossmann F, Strunz WT. Exact open quantum system dynamics: Optimal frequency vs time representation of bath correlations. J Chem Phys 2019;150:234105. [PMID: 31228905 DOI: 10.1063/1.5097158] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
26
Dunn IS, Tempelaar R, Reichman DR. Removing instabilities in the hierarchical equations of motion: Exact and approximate projection approaches. J Chem Phys 2019;150:184109. [DOI: 10.1063/1.5092616] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
27
Ikeda T, Dijkstra AG, Tanimura Y. Modeling and analyzing a photo-driven molecular motor system: Ratchet dynamics and non-linear optical spectra. J Chem Phys 2019;150:114103. [DOI: 10.1063/1.5086948] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
28
Ikeda T, Tanimura Y. Low-Temperature Quantum Fokker–Planck and Smoluchowski Equations and Their Extension to Multistate Systems. J Chem Theory Comput 2019;15:2517-2534. [DOI: 10.1021/acs.jctc.8b01195] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
29
Wang Y, Pan ZJ, Zhang HD, Yan YJ. Dissipaton dynamics theory versus quantum master equations. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
30
Axelrod S, Brumer P. An efficient approach to the quantum dynamics and rates of processes induced by natural incoherent light. J Chem Phys 2018;149:114104. [PMID: 30243280 DOI: 10.1063/1.5041005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
31
Erpenbeck A, Hertlein C, Schinabeck C, Thoss M. Extending the hierarchical quantum master equation approach to low temperatures and realistic band structures. J Chem Phys 2018;149:064106. [PMID: 30111120 DOI: 10.1063/1.5041716] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Han L, Zhang HD, Zheng X, Yan Y. On the exact truncation tier of fermionic hierarchical equations of motion. J Chem Phys 2018;148:234108. [PMID: 29935503 DOI: 10.1063/1.5034776] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
33
Zhang HD, Xu RX, Zheng X, Yan Y. Statistical quasi-particle theory for open quantum systems. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1431407] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
34
Ye L, Zhang HD, Wang Y, Zheng X, Yan Y. Low-frequency logarithmic discretization of the reservoir spectrum for improving the efficiency of hierarchical equations of motion approach. J Chem Phys 2017;147:074111. [DOI: 10.1063/1.4999027] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Ritschel G, Strunz WT, Eisfeld A. Closures of the functional expansion hierarchy in the non-Markovian quantum state diffusion approach. J Chem Phys 2017;147:064113. [DOI: 10.1063/1.4986251] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
36
Ikeda T, Tanimura Y. Probing photoisomerization processes by means of multi-dimensional electronic spectroscopy: The multi-state quantum hierarchical Fokker-Planck equation approach. J Chem Phys 2017;147:014102. [DOI: 10.1063/1.4989537] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
37
Song K, Shi Q. Theoretical study of photoinduced proton coupled electron transfer reaction using the non-perturbative hierarchical equations of motion method. J Chem Phys 2017. [DOI: 10.1063/1.4982928] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
38
Mascherpa F, Smirne A, Huelga SF, Plenio MB. Open Systems with Error Bounds: Spin-Boson Model with Spectral Density Variations. PHYSICAL REVIEW LETTERS 2017;118:100401. [PMID: 28339221 DOI: 10.1103/physrevlett.118.100401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Indexed: 06/06/2023]
39
Zhang HD, Qiao Q, Xu RX, Yan Y. Solvent-induced polarization dynamics and coherent two-dimensional spectroscopy: Dissipaton equation of motion approach. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.07.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
40
Welsch R, Song K, Shi Q, Althorpe SC, Miller TF. Non-equilibrium dynamics from RPMD and CMD. J Chem Phys 2016;145:204118. [DOI: 10.1063/1.4967958] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
41
Ye L, Wang X, Hou D, Xu RX, Zheng X, Yan Y. HEOM-QUICK: a program for accurate, efficient, and universal characterization of strongly correlated quantum impurity systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1269] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
42
Jang S. Generalized quantum Fokker-Planck equation for photoinduced nonequilibrium processes with positive definiteness condition. J Chem Phys 2016;144:214102. [PMID: 27276940 DOI: 10.1063/1.4952477] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
43
Zhang HD, Yan Y. Onsets of hierarchy truncation and self-consistent Born approximation with quantum mechanics prescriptions invariance. J Chem Phys 2016;143:214112. [PMID: 26646874 DOI: 10.1063/1.4936831] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
44
Ito H, Tanimura Y. Simulating two-dimensional infrared-Raman and Raman spectroscopies for intermolecular and intramolecular modes of liquid water. J Chem Phys 2016;144:074201. [DOI: 10.1063/1.4941842] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
45
Chen L, Gelin MF, Chernyak VY, Domcke W, Zhao Y. Dissipative dynamics at conical intersections: simulations with the hierarchy equations of motion method. Faraday Discuss 2016;194:61-80. [DOI: 10.1039/c6fd00088f] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
46
Kato A, Tanimura Y. Quantum heat transport of a two-qubit system: Interplay between system-bath coherence and qubit-qubit coherence. J Chem Phys 2015;143:064107. [DOI: 10.1063/1.4928192] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
47
Chen L, Zhao Y, Tanimura Y. Dynamics of a One-Dimensional Holstein Polaron with the Hierarchical Equations of Motion Approach. J Phys Chem Lett 2015;6:3110-3115. [PMID: 26267210 DOI: 10.1021/acs.jpclett.5b01368] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
48
Alemi M, Loring RF. Two-Dimensional Vibrational Spectroscopy of a Dissipative System with the Optimized Mean-Trajectory Approximation. J Phys Chem B 2015;119:8950-9. [PMID: 25275943 PMCID: PMC4383732 DOI: 10.1021/jp5076884] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 09/10/2014] [Indexed: 11/30/2022]
49
Wilkins DM, Dattani NS. Why Quantum Coherence Is Not Important in the Fenna–Matthews–Olsen Complex. J Chem Theory Comput 2015;11:3411-9. [DOI: 10.1021/ct501066k] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
50
Ikeda T, Ito H, Tanimura Y. Analysis of 2D THz-Raman spectroscopy using a non-Markovian Brownian oscillator model with nonlinear system-bath interactions. J Chem Phys 2015;142:212421. [DOI: 10.1063/1.4917033] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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