Dynamic structure factor and vibrational properties of SiO2 glass

High-frequency response of classical strongly coupled plasmas

The dynamic structure factor (DSF) of the Yukawa system is here obtained with highly converged molecular dynamics (MD) over the entire liquid phase. The data provide a rigorous test of theoretical models of ion-acoustic wave-dispersion relations, the intermediate scattering function, and the high-frequency response. We compare our MD results with seven diverse models, finding good agreement among those that enforce the three basic sum rules for dispersion properties, although one of the models has previously unreported spurious peaks. The MD simulations reveal that at intermediate frequencies ω, the high-frequency response of the DSF follows a power law, going approximately as ω^{-p}, where p>0, and p shows nontrivial dependencies on the wave vector q and the plasma parameters κ and Γ. In contrast, among the seven comparison models, the predicted high-frequency response is found to be independent of {q,κ,Γ}. This high-frequency power suggests a useful fitting form. In addition, these results expose limitations of several models and, moreover, suggest that some approaches are difficult or impossible to extend because of the lack of finite moments. We also find the double-plasmon resonance peak in our MD simulations that none of the theoretical models predicts.

Damping of vibrational excitations in glasses at terahertz frequency: The case of 3-methylpentane

We report a compared analysis of inelastic X ray scattering (IXS) and of low frequency Raman data of glassy 3-methylpentane. The IXS spectra have been analysed allowing for the existence of two distinct excitations at each scattering wavevector obtaining a consistent interpretation of the spectra. In particular, this procedure allows us to interpret the linewidth of the modes in terms of a simple model which relates them to the width of the first sharp diffraction peak in the static structure factor. In this model, the width of the modes arises from the blurring of the dispersion curves which increases approaching the boundary of the first pseudo-Brillouin zone. The position of the boson peak contribution to the density of vibrational states derived from the Raman scattering measurements is in agreement with the interpretation of the two excitations in terms of a longitudinal mode and a transverse mode, the latter being a result of the mixed character of the transverse modes away from the center of the pseudo-Brillouin zone.

Striking role of non-bridging oxygen on glass transition temperature of calcium aluminosilicate glass-formers

Molecular dynamics simulations are used to study the structural and dynamic properties of calcium aluminosilicate, (CaO-Al2O3)1-x(SiO2)x, glass formers along three joins, namely, R = 1, 1.57, and 3, in which the silica content x can vary from 0 to 1. For all compositions, we determined the glass-transition temperature, the abundances of the non-bridging oxygen, triclusters, and AlO5 structural units, as well as the fragility from the temperature evolution of the α-relaxation times. We clearly evidence the role played by the non-bridging oxygen linked either to Al atoms or Si atoms in the evolution of the glass-transition temperature as well as of the fragility as a function of silica content along the three joins.

Vibrational softening of a protein on ligand binding

Neutron scattering experiments have demonstrated that binding of the cancer drug methotrexate softens the low-frequency vibrations of its target protein, dihydrofolate reductase (DHFR). Here, this softening is fully reproduced using atomic detail normal-mode analysis. Decomposition of the vibrational density of states demonstrates that the largest contributions arise from structural elements of DHFR critical to stability and function. Mode-projection analysis reveals an increase of the breathing-like character of the affected vibrational modes consistent with the experimentally observed increased adiabatic compressibility of the protein on complexation.

Generation of Atomistic Models of Periodic Mesoporous Silica by Kinetic Monte Carlo Simulation of the Synthesis of the Material

We have developed a molecular simulation method for the generation of realistic atomic-level models for periodic mesoporous silicas. Using simplified interaction potentials and simplified representations of the templating micelles, the simulation follows the reaction path of the hydrothermal synthesis and calcination of the silica material in a kinetic Monte Carlo (kMC) simulation. The only input to the simulation is the geometry of the micelle and the number of silicic acid monomers at the beginning of the synthesis. We simulated the adsorption properties of the PMS models using Grand Canonical Monte Carlo simulation. With use of MCM-41 materials of different pore sizes as a prototype material, experimental and simulated adsorption isotherms for nitrogen, ethane, and carbon dioxide were compared, showing good agreement between simulation and experiment.

Origin of the High-Frequency Doublet in the Vibrational Spectrum of Vitreous SiO2

The vibrational properties of amorphous SiO2 were studied within first-principles density functional theory. The calculated spectrum is in good agreement with neutron data, showing, in particular, a double peak in the high-frequency region. This doublet results from different local modes of the tetrahedral subunits and cannot be ascribed to a longitudinal-optic-transverse-optic (LO-TO) effect. This solves a long-standing controversy about the origin of the doublet in neutron spectra. A LO-TO splitting is recovered only when the long-wavelength limit is probed, as in optical experiments. These findings should be a general feature of tetrahedral AX2 amorphous networks.