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Roszak K, Katrusiak A. Competition of interactions and a new high-temperature phase of selenourea. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2023; 79:64-72. [PMID: 36748899 DOI: 10.1107/s2052520622011623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 12/02/2022] [Indexed: 01/21/2023]
Abstract
The aggregation of molecules is usually associated with a specific type of interaction, which can be altered by thermodynamic conditions. Under normal conditions, the crystal structure of selenourea, SeC(NH2)2, phase α is trigonal, space group P31, Z = 27. Its large number of independent molecules (Zα' = 9) can be associated with the formation of an NH...N hydrogen bond substituting one of 36 independent NH...Se hydrogen bonds, which prevail among intermolecular interactions. Phase α approximates the trigonal structure with a threefold smaller unit cell (Z = 9), which in turn approximates another still threefold smaller unit cell (Z = 3). The temperature-induced transformations of selenourea have been characterized by calorimetry and by performing 21 single-crystal X-ray diffraction structural determinations as a function of temperature. At 381.0 K, phase α undergoes a first-order displacive transition to phase γ, with space group P3121 and Z reduced to 9, when the NH...N bond is broken and an NH...Se bond is formed in its place. Previously, an analogous competition was observed between NH...N and NH...O hydrogen bonds in high-pressure phase III of urea. The lattice vectors along the (001) plane in low- and high-temperature phases of selenourea are related by a similarity rule, while the lattice dimensions along direction c are not affected. This similarity rule also applies to the structures of phase γ and hypothetical phase δ (Z = 3). The thermally controlled transition between enantiomorphic phases of selenourea contrasts with its high-pressure transition at 0.21 GPa to a centrosymmetric phase β, where both the NH...Se and NH...N bonds are present. The compression and heating reduce the number of independent molecules from Z' = 9 in phase α, to Z' = 2 in phase β and to Z' = 1.5 in phase γ.
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Affiliation(s)
- Kinga Roszak
- Department of Materials Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań, 61-614, Poland
| | - Andrzej Katrusiak
- Department of Materials Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań, 61-614, Poland
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Lindner Ł, Zdanowska-Frączek M, Czapla Z, Frączek Z. A closer look at superionic phase transition in (NH 4) 4H 2(SeO 4) 3: impedance spectroscopy under pressure. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2020; 76:336-342. [PMID: 32831254 DOI: 10.1107/s2052520620003741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 03/12/2020] [Indexed: 06/11/2023]
Abstract
The proton-conducting material (NH4)4H2(SeO4)3 is examined to check whether its conductivity spectra are sensitive to subtle changes in the crystal structure and proton dynamics caused by external pressure. The AC conductivity was measured using impedance spectroscopy, in the frequency range from 100 Hz to 1 MHz, at temperatures 260 K < T < 400 K and pressures 0.1 MPa < p < 500 MPa. On the basis of the impedance spectra, carefully analyzed at different thermodynamic conditions, the p-T phase diagram of the crystal is constructed. It is found to be linear in the pressure range of the experiment, with the pressure coefficient value dTs/dp = -0.023 K MPa-1. The hydrostatic pressure effect on proton conductivity is also presented and discussed. Measurements of the electrical conductivity versus time were performed at a selected temperature T = 352.3 K and at pressures 0.1 MPa < p < 360 MPa. At fixed thermodynamic conditions (p = 302 MPa, T = 352.3 K), the sluggish solid-solid transformation from low conducting to superionic phase was induced. It is established that the kinetics of this transformation can be described by the Avrami model with an effective Avrami index value of about 4, which corresponds to the classical value associated with the homogeneous nucleation and three-dimensional growth of a new phase.
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Affiliation(s)
- Łukasz Lindner
- Institute of Molecular Physics Polish Academy of Sciences, Poznań, 60-179, Poland
| | | | - Zbigniew Czapla
- Department of Physics, Opole University of Technology, Opole 45-370, Poland
| | - Ziemowit Frączek
- Institute of Molecular Physics Polish Academy of Sciences, Poznań, 60-179, Poland
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Ławniczak P, Zdanowska-Frączek M, Lindner Ł, Pawłowski A. Uncommon first universality of conductivity in superprotonic (NH 4) 3H(SeO 4) 2 single crystals. Phys Chem Chem Phys 2019; 21:6051-6058. [DOI: 10.1039/c8cp07513a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The proton conducting crystal (NH4)3H(SeO4)2 is examined to check whether the first universality of conductivity spectra is sensitive to subtle changes in the crystal structure and proton dynamics caused by external pressure.
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Affiliation(s)
- Paweł Ławniczak
- Institute of Molecular Physics Polish Academy of Sciences
- 60-179 Poznań
- Poland
| | | | - Łukasz Lindner
- Institute of Molecular Physics Polish Academy of Sciences
- 60-179 Poznań
- Poland
| | - Antoni Pawłowski
- Institute of Molecular Physics Polish Academy of Sciences
- 60-179 Poznań
- Poland
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Przybyłek M, Ziółkowska D, Mroczyńska K, Cysewski P. Propensity of salicylamide and ethenzamide cocrystallization with aromatic carboxylic acids. Eur J Pharm Sci 2016; 85:132-40. [DOI: 10.1016/j.ejps.2016.02.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Revised: 02/13/2016] [Accepted: 02/15/2016] [Indexed: 11/26/2022]
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Ji C, Li S, Deng F, Liu S, Asghar MA, Sun Z, Hong M, Luo J. Bistable N–H⋯N hydrogen bonds for reversibly modulating the dynamic motion in an organic co-crystal. Phys Chem Chem Phys 2016; 18:10868-72. [DOI: 10.1039/c6cp01073c] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Bistable N–H⋯N hydrogen bonds enable the modulation of the dynamic molecular motion by slowing down the fast rotation in 1,2-diazabicyclo(2.2.2)octane bis(thiourea).
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Affiliation(s)
- Chengmin Ji
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
| | - Shenhui Li
- State Key Laboratory Magnetic Resonance and Atomic Molecular Physics
- Wuhan Center for Magnetic Resonance
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan
| | - Feng Deng
- State Key Laboratory Magnetic Resonance and Atomic Molecular Physics
- Wuhan Center for Magnetic Resonance
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Sciences
- Wuhan
| | - Sijie Liu
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
| | - Muhammad Adnan Asghar
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
| | - Zhihua Sun
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
| | - Maochun Hong
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
| | - Junhua Luo
- Key Laboratory of Optoelectronic Materials Chemistry and Physics
- Fujian Institute of Research on the Structure of Matter
- Chinese Academy of Sciences
- Fuzhou
- P. R. China
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Cai W, Katrusiak A. Pressure effects on H-ordering in hydrogen bonds and interactions in benzoic acid. CrystEngComm 2012. [DOI: 10.1039/c2ce25128k] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Ratajczak-Sitarz M, Katrusiak A. Coupling of molecular orientation with the hydrogen-bond dimensions and H-sites in carboxylic acids. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.03.031] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Tumanov NA, Boldyreva EV, Kolesov BA, Kurnosov AV, Quesada Cabrera R. Pressure-induced phase transitions in L-alanine, revisited. ACTA CRYSTALLOGRAPHICA SECTION B: STRUCTURAL SCIENCE 2010; 66:458-71. [DOI: 10.1107/s010876811001983x] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2010] [Accepted: 05/26/2010] [Indexed: 11/10/2022]
Abstract
The effect of pressure on L-alanine has been studied by X-ray powder diffraction (up to 12.3 GPa), single-crystal X-ray diffraction, Raman spectroscopy and optical microscopy (up to ∼ 6 GPa). No structural phase transitions have been observed. At ∼ 2 GPa the cell parameters a and b become accidentally equal to each other, but without a change in space-group symmetry. Neither of two transitions reported by others (to a tetragonal phase at ∼ 2 GPa and to a monoclinic phase at ∼ 9 GPa) was observed. The changes in cell parameters were continuous up to the highest measured pressures and the cells remained orthorhombic. Some important changes in the intermolecular interactions occur, which also manifest themselves in the Raman spectra. Two new orthorhombic phases could be crystallized from a MeOH/EtOH/H2O pressure-transmitting mixture in the pressure range 0.8–4.7 GPa, but only if the sample was kept at these pressures for at least 1–2 d. The new phases converted back to L-alanine on decompression. Judging from the Raman spectra and cell parameters, the new phases are most probably not L-alanine but its solvates.
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Barczyński P, Ratajczak-Sitarz M, Katrusiak A, Szafran M. Structure of 1-methyl-6-oxyquinolinium betaine dihydrate studied by X-ray diffraction, DFT calculations, vibrational and NMR spectra. J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2010.03.027] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Boldyreva EV, Ivashevskaya SN, Sowa H, Ahsbahs H, Weber HP. Effect of hydrostatic pressure on the γ-polymorph of glycine. 1. A polymorphic transition into a new δ-form. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zkri.220.1.50.58886] [Citation(s) in RCA: 93] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The results of a high-resolution powder diffraction study of the effect of high hydrostatic pressure up to 8 GPa on the pure γ-polymorph of glycine (P31) are discussed. A phase transition with a jumpwise change of cell volume and cell parameters was observed. The transition starts at about 2.73 GPa and is still not complete even at 7.85 GPa. The crystal structure of the previously unknown high-pressure polymorph of glycine (δ-polymorph) could be solved and refined in the space group Pn. In this structure, glycine zwitter-ions are linked via NH…O hydrogen bonds into layers, which form double-layered bands via additional NH…O hydrogen bonds. The structure of the individual layers in the high-pressure polymorph is similar to that in the previously known α- (P21/n) and β- (P21) forms, but the packing of the layers is essentially different. The pressure-induced polymorphic transformation in the γ-glycine can be compared with a change in the secondary structure of a peptide, when a helix is transformed into a sheet.
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Boldyreva EV, Kolesnik EN, Drebushchak TN, Ahsbahs H, Beukes JA, Weber HP. A comparative study of the anisotropy of lattice strain induced in the crystals of L-serine by cooling down to 100 K or by increasing pressure up to 4.4 GPa. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zkri.220.1.58.58893] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The anisotropy of lattice strain in the crystals of L-serine (P212121, at ambient conditions a = 5.615(1) Å, b = 8.589(2) Å, c = 9.346(2) Å) on cooling down to 100 K and with increasing hydrostatic pressure up to 4.4 GPa was compared with each other and also with the results previously obtained for the polymorphs of glycine. On cooling, the structure expanded slightly along the crystallographic a-direction, compression along the crystallographic b- and c-directions (normal to the chains of the serine zwitter-ions) was very similar. With increasing pressure, the same structure compressed in all the crystallographic directions, linear strain along c-axis was the largest, linear strain along a-axis — the smallest, linear compression along the b-axis with increasing pressure was slightly larger than that along the a-axis. The different anisotropy of lattice strain of the same structure on cooling and under pressure could be correlated with different response of intermolecular hydrogen bonds to these two scalar actions.
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Orientations of water molecule and hydronium ion in 1-methylquinolinium-3-carboxy chloride monohydrate studied by X-ray diffraction, DFT calculations, NMR, FTIR and Raman spectra. J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2008.07.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Dega-Szafran Z, Katrusiak A, Szafran M. Molecular structure of hydrated complex of 1,4-dimethylpiperazine di-betaine with l-tartaric acid. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2008.06.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Budzianowski A, Katrusiak A, Szafrański M. Anomalous Protonic-Glass Evolution from Ordered Phase in NH···N Hydrogen-Bonded DabcoHBF4 Ferroelectric. J Phys Chem B 2008; 112:16619-25. [DOI: 10.1021/jp801316a] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Armand Budzianowski
- Faculty of Chemistry, Adam Mickiewicz University, Grunwaldzka 6, 60-780 Poznań, Poland
| | - Andrzej Katrusiak
- Faculty of Chemistry, Adam Mickiewicz University, Grunwaldzka 6, 60-780 Poznań, Poland
| | - Marek Szafrański
- Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań, Poland
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Dega-Szafran Z, Katrusiak A, Szafran M. Molecular structure of 1:1 complex of 1,4-dimethylpiperazine di-betaine with l-tartaric acid studied by X-ray diffraction, FTIR, Raman and NMR spectroscopy and DFT calculations. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2008.03.057] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Ratajczak-Sitarz M, Katrusiak A, Gawrońska K, Gawroński J. Racemate resolution via diastereomeric helicates in hydrogen-bonded co-crystals: the case of BINOL–diamine complexes. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.03.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Affiliation(s)
- Andrzej Katrusiak
- a Department of Crystallography , Faculty of Chemistry, Adam Mickiewicz University , Grunwaldzka 6, 60-780 , Poznań , Poland
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Haznar A, Pietraszko A. Temperature behavior of the protonic conductor K4LiH3(SO4)4. J SOLID STATE CHEM 2004. [DOI: 10.1016/j.jssc.2004.01.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Szafrański M, Katrusiak A. Temperature-induced H-site centring in NH--O hydrogen-bonds of guanidinium nitrate by neutron diffraction. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.05.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Szafrański M, Katrusiak A, McIntyre GJ. Ferroelectric order of parallel bistable hydrogen bonds. PHYSICAL REVIEW LETTERS 2002; 89:215507. [PMID: 12443429 DOI: 10.1103/physrevlett.89.215507] [Citation(s) in RCA: 128] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2002] [Indexed: 05/24/2023]
Abstract
A new NH.N hydrogen-bonded ferroelectric crystal of [C6H12N2H]+ReO - 4 (dabcoHReO4) exhibits exceptional dielectric properties that result from the unique structure where all the bistable NH...N hydrogen bonds are parallel and directed exactly in the same sense. Consequently, the main structural origin of the spontaneous polarization of the crystal is the identical orientation of the asymmetric NH+...N hydrogen bonds along [001]. This first observation of a ferroelectric with parallel arrangement of the NH+...N bonded aggregates, gives temperature-independent and the highest spontaneous polarization ever reported for an organic or water-soluble substance.
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Affiliation(s)
- Marek Szafrański
- Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań, Poland
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Baran J, Łukaszewicz K, Pietraszko A, Śledź M. Structural investigations of the ferroelectric glycinium hydrogenphosphite (GPI) and its deuterated analogue (DGPI). J Mol Struct 2002. [DOI: 10.1016/s0022-2860(02)00061-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Rovira C, Novoa JJ, Ballone P. Hydrogen bonding and collective proton modes in clusters and periodic layers of squaric acid: A density functional study. J Chem Phys 2001. [DOI: 10.1063/1.1402166] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Dega-Szafran Z, Katrusiak A, Szafran M. Molecular structures, hydrogen bonding and electrostatic interactions of 3-(2-bromo-pyridinium)-propionic acid and 3-(pyridinium)-pivalic acid halides. J Mol Struct 2001. [DOI: 10.1016/s0022-2860(01)00487-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Katrusiak A. Proton dynamics in NH+⋯N hydrogen bond in the paraelectric structure of 1,4-diazabicyclo[2.2.2]octane perchlorate. J Mol Struct 2000. [DOI: 10.1016/s0022-2860(00)00475-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Thermodynamic behaviour of bistable NH+–N hydrogen bonds in monosalts of 1,4-diazabicyclo[2.2.2]octane. Chem Phys Lett 2000. [DOI: 10.1016/s0009-2614(00)00047-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Katrusiak A. Stereochemistry and transformations of NH---N hydrogen bonds Part I. Structural preferences for the hydrogen site. J Mol Struct 1999. [DOI: 10.1016/s0022-2860(98)00566-3] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Stereochemistry and transformation of OHO hydrogen bonds Part II. Evaluation of Tc in hydrogen-bonded ferroelectrics from structural data. J Mol Struct 1996. [DOI: 10.1016/0022-2860(95)09091-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Belushkin A, Ibberson R, Shuvalov L. Neutron powder diffraction studies of some superprotonic and mixed crystals with disordered hydrogen bonds. J Mol Struct 1996. [DOI: 10.1016/0022-2860(95)08949-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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