Hindered and modulated rotational states and spectra of adsorbed diatomic molecules

Diffusion Monte Carlo simulations of gas phase and adsorbed D2-(H2)n clusters

We have computed ground state energies and analyzed radial distributions for several gas phase and adsorbed D₂(H₂)_n and HD(H₂)_n clusters. An external model potential designed to mimic ionic adsorption sites inside porous materials is used [M. Mella and E. Curotto, J. Phys. Chem. A 121, 5005 (2017)]. The isotopic substitution lowers the ground state energies by the expected amount based on the mass differences when these are compared with the energies of the pure clusters in the gas phase. A similar impact is found for adsorbed aggregates. The dissociation energy of D₂ from the adsorbed clusters is always much higher than that of H₂ from both pure and doped aggregates. Radial distributions of D₂ and H₂ are compared for both the gas phase and adsorbed species. For the gas phase clusters, two types of hydrogen-hydrogen interactions are considered: one based on the assumption that rotations and translations are adiabatically decoupled and the other based on nonisotropic four-dimensional potential. In the gas phase clusters of sufficiently large size, we find the heavier isotopomer more likely to be near the center of mass. However, there is a considerable overlap among the radial distributions of the two species. For the adsorbed clusters, we invariably find the heavy isotope located closer to the attractive interaction source than H₂, and at the periphery of the aggregate, H₂ molecules being substantially excluded from the interaction with the source. This finding rationalizes the dissociation energy results. For D₂-(H₂)_n clusters with n≥12, such preference leads to the desorption of D₂ from the aggregate, a phenomenon driven by the minimization of the total energy that can be obtained by reducing the confinement of (H₂)₁₂. The same happens for (H₂)₁₃, indicating that such an effect may be quite general and impact on the absorption of quantum species inside porous materials.

Quest for Inexpensive Hydrogen Isotopic Fractionation: Do We Need 2D Quantum Confining in Porous Materials or Are Rough Surfaces Enough? The Case of Ammonia Nanoclusters

We study the adsorption energetics and quantum properties of the molecular hydrogen isotopes H₂, D₂, and T₂ onto the surface of rigid ammonia nanoclusters with quantum simulations and accurate model potential energy surfaces (PES). A highly efficient diffusion Monte Carlo (DMC) algorithm for rigid rotors allowed us to accurately define zero-point adsorption energies for the three isotopes, as well as the degree of translational and rotational delocalization that each affords on the surface. From the data emerges that the quantum adsorption energy (E_ads) of T₂ can be up to twice the one of H₂ at 0 K, suggesting the possibility of exploiting some form of solid ammonia to selectivity separate hydrogen isotopes at low temperatures (≃20 K). This is discussed by focusing on the structural motif that may be more effective for the task. The analysis of the contributions to E_ads, however, surprisingly indicates that the average kinetic energy (E^kin) and rotation energy (E_rot^kin) of T₂ can also be, respectively, 2 times and 20 times higher than those of H₂; this finding markedly deviates from what is predicted for hydrogen molecules inside carbon nanotubes (CNT) or metallic-organic frameworks (MOF), where E^kin and E_rot^kin is higher for H₂ due to the unavoidable effects of confinement and hindrance to its rotational motion. The rationale for these differences is provided by the geometrical distributions for the rigid rotors, which reveal an increasingly stronger coupling between rotational and translational degrees of freedom upon increasing the isotopic mass. This effect has never been observed before on adsorbing surfaces (e.g., graphite) and is induced by a strongly anisotropic and anharmonic bowl-like potential experienced by the rotors.

A realistic potential model for N–H vector diffusion in proteins

A realistic model for the potential energy for the diffusion of N-H vectors in a protein is proposed, massively modifying the simplistic models currently used in the literature. In particular, a quantitative and analytical connection between the order parameter of the N-H vector diffusion in a protein and the number of potential minima is established, offering a significant insight into the longstanding question of how protein dynamics is affected by the potential-energy landscape. The largest number of potential minima in a protein is estimated to be no more than around 25. In addition, the conformational entropies derived from classical statistical mechanics and quantum statistical mechanics are proved to be identical. Based on the presented theoretical formula, the number of potential minima for each residue of five representative proteins is evaluated and shows a good correlation between local structural flexibility and the number of potential minima.

Fullerene quantum gyroscope

We report the observation of quantized rotational states of a diatomic C2 unit in solid endohedral fullerene C(2)Sc(2)@C(84). The rotational transitions induce a periodic line pattern in the low energy Raman spectrum. The rotational constant B and the C-C distance were found to be 1.73 cm(-1) and 0.127 nm, respectively. Density functional calculations revealed an intrinsic rotational barrier of the order of only a few meV for the C2 unit. The Schrödinger equation involving the potential barrier was solved and the Raman tensor matrix elements were calculated, yielding good quantitative agreement with the experiment. To our best knowledge this is the first intrinsic rotational spectrum of a diatomic plane molecular rotor.