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Richters D, Kühne TD. Linear-scaling self-consistent field theory based molecular dynamics: application to C60buckyballs colliding with graphite. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1511899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Dorothee Richters
- Institute of Physical Chemistry and Center of Computational Sciences, Johannes Gutenberg University Mainz, Mainz, Germany
| | - Thomas D. Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, University of Paderborn, Paderborn, Germany
- Paderborn Center for Parallel Computing and Institute for Lightweight Design with Hybrid Systems, Paderborn, Germany
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Cawkwell MJ, Coe JD, Yadav SK, Liu XY, Niklasson AMN. Extended Lagrangian Formulation of Charge-Constrained Tight-Binding Molecular Dynamics. J Chem Theory Comput 2015; 11:2697-704. [DOI: 10.1021/acs.jctc.5b00143] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- M. J. Cawkwell
- Theoretical Division, ‡Materials Science
and Technology Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - J. D. Coe
- Theoretical Division, ‡Materials Science
and Technology Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - S. K. Yadav
- Theoretical Division, ‡Materials Science
and Technology Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - X.-Y. Liu
- Theoretical Division, ‡Materials Science
and Technology Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - A. M. N. Niklasson
- Theoretical Division, ‡Materials Science
and Technology Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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Sheppard TJ, Lozovoi AY, Pashov DL, Kohanoff JJ, Paxton AT. Universal tight binding model for chemical reactions in solution and at surfaces. I. Organic molecules. J Chem Phys 2014; 141:044503. [DOI: 10.1063/1.4887095] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. J. Sheppard
- Atomistic Simulation Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - A. Y. Lozovoi
- Atomistic Simulation Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - D. L. Pashov
- Department of Physics, King's College London, Strand, London WC2R 2LS, United Kingdom
| | - J. J. Kohanoff
- Atomistic Simulation Centre, School of Mathematics and Physics, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - A. T. Paxton
- Department of Physics, King's College London, Strand, London WC2R 2LS, United Kingdom
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Richters D, Kühne TD. Self-consistent field theory based molecular dynamics with linear system-size scaling. J Chem Phys 2014; 140:134109. [DOI: 10.1063/1.4869865] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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5
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Ukpong AM. Tight-binding molecular dynamics study of the hydrogen-induced structural modifications in tetrahedral amorphous carbon. Mol Phys 2010. [DOI: 10.1080/00268976.2010.485583] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Voityuk AA. Thermochemistry of Hydrocarbons. Back to Extended Hückel Theory. J Chem Theory Comput 2008; 4:1877-85. [DOI: 10.1021/ct8003222] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alexander A. Voityuk
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain, and Institute of Computational Chemistry, Universitat de Girona, 17071 Girona, Spain
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Zhao J, Guo X, Wen B. A nonorthogonal tight-binding model for hydrocarbon molecules and nanostructures. MOLECULAR SIMULATION 2007. [DOI: 10.1080/08927020701203706] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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9
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Voityuk AA. Modified tight-binding model for fast and accurate estimation of thermochemistry and molecular structure. Parameters and results for hydrocarbons. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.11.037] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Voityuk AA. Accurate Treatment of Energetics and Geometry of Carbon and Hydrocarbon Compounds within Tight-Binding Model. J Chem Theory Comput 2006; 2:1038-44. [DOI: 10.1021/ct600064m] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alexander A. Voityuk
- Institució Catalana de Recerca i Estudis Avançats, Institute of Computational Chemistry, Universitat de Girona, 17071 Girona, Spain
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11
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Valencia F, Romero AH, Kiwi M, Ramirez R, Toro-Labbe A. Ab initio study of cubyl chains and networks. J Chem Phys 2004; 121:9172-7. [PMID: 15527386 DOI: 10.1063/1.1805492] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The spatial arrangements and physical properties of one- and two-dimensional structures, based on the amazing cubane (C(8)H(8)) molecule, are investigated in detail. In particular, we compute the electronic structure, both by first principle calculations and by semiempirical methods. The elastic and vibrational properties are evaluated as well. All these results are compared with those of the single cubane molecule, in order to elucidate the influence of dimensionality.
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Affiliation(s)
- F Valencia
- Advanced Materials Department, IPICyT, Camino a la Presa San José, 2055 Colonia Lomas 4ta. sección, San Luis Potosí (SLP), Mexico
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Che R, Peng LM, Zhang S, Sun Z. Energetics of high temperature dimer desorption and reconstruction at the end of small zigzag carbon nanotubes. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(02)01812-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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13
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Che R, Peng LM, Zhang S, Wang S, Luo J. Formation energetics of n-member rings at the end of small zigzag carbon nanotubes. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)00594-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Battaile CC, Srolovitz DJ, Oleinik II, Pettifor DG, Sutton AP, Harris SJ, Butler JE. Etching effects during the chemical vapor deposition of (100) diamond. J Chem Phys 1999. [DOI: 10.1063/1.479727] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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Baer R, Head-Gordon M. Chebyshev expansion methods for electronic structure calculations on large molecular systems. J Chem Phys 1997. [DOI: 10.1063/1.474158] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Godwin PD, Horsfield AP, Pettifor DG, Sutton AP. Computational materials synthesis. II. A study of polymerization. PHYSICAL REVIEW. B, CONDENSED MATTER 1996; 54:15776-15784. [PMID: 9985647 DOI: 10.1103/physrevb.54.15776] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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17
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Godwin PD, Horsfield AP, Stoneham AM, Bull SJ, Ford IJ, Harker AH, Pettifor DG, Sutton AP. Computational materials synthesis. III. Synthesis of hydrogenated amorphous carbon from molecular precursors. PHYSICAL REVIEW. B, CONDENSED MATTER 1996; 54:15785-15794. [PMID: 9985648 DOI: 10.1103/physrevb.54.15785] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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