Thermodynamic uncertainty relations and molecular-scale energy conversion

Virial-like thermodynamic uncertainty relation in the tight-binding regime

We presented a methodology to approximate the entropy production for Brownian motion in a tilted periodic potential. The approximation stems from the well known thermodynamic uncertainty relation. By applying a virial-like expansion, we provided a tighter lower limit solely in terms of the drift velocity and diffusion. The approach presented is systematically analyzed in the tight-binding regime. We also provide a relative simple rule to validate using the tight-binding approach based on drift and diffusion relations rather than energy barriers and forces. We also discuss the implications of our results outside the tight-binding regime.

Improved estimation for energy dissipation in biochemical oscillations

Biochemical oscillations, regulating the timing of life processes, need consume energy to achieve good performance on crucial functions, such as high accuracy of phase period and high sensitivity to external signals. However, it is a great challenge to precisely estimate the energy dissipation in such systems. Here, based on the stochastic normal form theory (SNFT), we calculate the Pearson correlation coefficient between the oscillatory amplitude and phase, and a trade-off relation between transport efficiency and phase sensitivity can then be derived, which serves as a tighter form than the estimator resulting from the conventional thermodynamic uncertainty relation (TUR). Our findings demonstrate that a more precise energy dissipation estimation can be obtained by enhancing the sensitivity of the biochemical oscillations. Moreover, the internal noise and amplitude power effects have also been discovered.

A model of minimal entropy generation for cytoskeletal transport systems with multiple interacting motors

We study the steady-state rate of entropy generation for multiple interacting particles. The description used is based on the partially asymmetric exclusion process in a lattice with periodic boundary conditions. Our methodology shows that in the steady-state, the rate of entropy generation is directly proportional to the bulk drift and the applied driving force. Since in many cases the driving force is unknown or hard to determine. We circumvent this by deriving a lower bound for the entropy, resulting in an extended thermodynamic uncertainty relation for the asymmetric simple exclusion process. We systematically compared this bound with the actual entropy generation. Thus, we identify the force regimes, and particles' density conditions where the entropy bound derived from this extended thermodynamic uncertainty relation is meaningful.

Internal energy and information flows mediate input and output power in bipartite molecular machines

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the general design principles governing how biomolecular machines achieve effective free-energy transduction in light of these challenges. We use a model of two strongly coupled stochastic rotary motors to explore the effect of coupling strength between components of a molecular machine. We observe prominent thermodynamic characteristics at intermediate coupling strength, near that which maximizes output power: a maximum in power and information transduced from the upstream to the downstream system, and equal subsystem entropy production rates. These observations are unified through a bound on the machine's input and output power, which accounts for both the energy and information transduced between subsystems.

Violating the thermodynamic uncertainty relation in the three-level maser

Nanoscale heat engines are subject to large fluctuations which affect their precision. The thermodynamic uncertainty relation (TUR) provides a trade-off between output power, fluctuations, and entropic cost. This trade-off may be overcome by systems exhibiting quantum coherence. This Letter provides a study of the TUR in a prototypical quantum heat engine, the Scovil-Schulz-DuBois maser. Comparison with a classical reference system allows us to determine the effect of quantum coherence on the performance of the heat engine. We identify analytically regions where coherence suppresses fluctuations, implying a quantum advantage, as well as regions where fluctuations are enhanced by coherence. This quantum effect cannot be anticipated from the off-diagonal elements of the density matrix. Because the fluctuations are not encoded in the steady state alone, TUR violations are a consequence of coherence that goes beyond steady-state coherence. While the system violates the conventional TUR, it adheres to a recent formulation of a quantum TUR. We further show that parameters where the engine operates close to the conventional limit are prevalent and TUR violations in the quantum model are not uncommon.

Dissipation-recurrence inequalities at the steady state

For Markov jump processes in out-of-equilibrium steady state, we present inequalities which link the average rate of entropy production with the timing of the site-to-site recurrences. Such inequalities are upper bounds on the average rate of entropy production. The combination with the finite-time thermodynamic uncertainty relation (a lower bound) yields inequalities of the pure kinetic kind for the relative precision of a dynamical output. After having derived the main relations for the discrete case, we sketch the possible extension to overdamped Markov dynamics on continuous degrees of freedom, treating explicitly the case of one-dimensional diffusion in tilted periodic potentials; an upper bound on the average velocity is derived, in terms of the average rate of entropy production and the microscopic diffusion coefficient, which corresponds to the finite-time thermodynamic uncertainty relation in the limit of vanishingly small observation time.

Thermodynamic uncertainty relation for energy transport in a transient regime: A model study

We investigate a transient version of the recently discovered thermodynamic uncertainty relation (TUR) which provides a precision-cost trade-off relation for certain out-of-equilibrium thermodynamic observables in terms of net entropy production. We explore this relation in the context of energy transport in a bipartite setting for three exactly solvable toy model systems (two coupled harmonic oscillators, two coupled qubits, and a hybrid coupled oscillator-qubit system) and analyze the role played by the underlying statistics of the transport carriers in the TUR. Interestingly, for all these models, depending on the statistics, the TUR ratio can be expressed as a sum or a difference of a universal term which is always greater than or equal to 2 and a corresponding entropy production term. We find that the generalized version of the TUR, originating from the universal fluctuation symmetry, is always satisfied. However, interestingly, the specialized TUR, a tighter bound, is always satisfied for the coupled harmonic oscillator system obeying Bose-Einstein statistics. Whereas, for both the coupled qubit, obeying Fermi-like statistics, and the hybrid qubit-oscillator system with mixed Fermi-Bose statistics, violation of the tighter bound is observed in certain parameter regimes. We have provided conditions for such violations. We also provide a rigorous proof following the nonequilibrium Green's function approach that the tighter bound is always satisfied in the weak-coupling regime for generic bipartite systems.

Enhanced diffusion and the eigenvalue band structure of Brownian motion in tilted periodic potentials

We consider enhanced diffusion for Brownian motion on a tilted periodic potential. Expressing the effective diffusion in terms of the eigenvalue band structure, we establish a connection between band gaps in the eigenspectrum and enhanced diffusion. We explain this connection for a simple cosine potential with a linear force and then generalize to more complicated potentials including one-dimensional potentials with multiple frequency components and nonseparable multidimensional potentials. We find that potentials with multiple band gaps in the eigenspectrum can lead to multiple maxima or broadening of the force-diffusion curve. These features are likely to be observable in experiments.