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Te Vrugt M, Topp L, Wittkowski R, Heuer A. Microscopic derivation of the thin film equation using the Mori-Zwanzig formalism. J Chem Phys 2024; 161:094904. [PMID: 39225531 DOI: 10.1063/5.0217535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Accepted: 07/19/2024] [Indexed: 09/04/2024] Open
Abstract
The hydrodynamics of thin films is typically described using macroscopic models whose connection to the microscopic particle dynamics is a subject of ongoing research. Existing methods based on density functional theory provide a good description of static thin films but are not sufficient for understanding nonequilibrium dynamics. In this work, we present a microscopic derivation of the thin film equation using the Mori-Zwanzig projection operator formalism. This method allows to directly obtain the correct gradient dynamics structure along with microscopic expressions for mobility and free energy. Our results are verified against molecular dynamics simulations for both simple fluids and polymers.
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Affiliation(s)
- Michael Te Vrugt
- DAMTP, Centre for Mathematical Sciences, University of Cambridge, Cambridge CB3 0WA, United Kingdom
| | - Leon Topp
- Institute of Physical Chemistry, Universität Münster, 48149 Münster, Germany
| | - Raphael Wittkowski
- Institute of Theoretical Physics, Center for Soft Nanoscience, Universität Münster, 48149 Münster, Germany
| | - Andreas Heuer
- Institute of Physical Chemistry, Universität Münster, 48149 Münster, Germany
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Demarchi L, Goychuk A, Maryshev I, Frey E. Enzyme-Enriched Condensates Show Self-Propulsion, Positioning, and Coexistence. PHYSICAL REVIEW LETTERS 2023; 130:128401. [PMID: 37027840 DOI: 10.1103/physrevlett.130.128401] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 02/03/2023] [Indexed: 06/19/2023]
Abstract
Enzyme-enriched condensates can organize the spatial distribution of their substrates by catalyzing nonequilibrium reactions. Conversely, an inhomogeneous substrate distribution induces enzyme fluxes through substrate-enzyme interactions. We find that condensates move toward the center of a confining domain when this feedback is weak. Above a feedback threshold, they exhibit self-propulsion, leading to oscillatory dynamics. Moreover, catalysis-driven enzyme fluxes can lead to interrupted coarsening, resulting in equidistant condensate positioning, and to condensate division.
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Affiliation(s)
- Leonardo Demarchi
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
| | - Andriy Goychuk
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
| | - Ivan Maryshev
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
- Max Planck School Matter to Life, Hofgartenstraße 8, D-80539 München, Germany
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Stegemerten F, John K, Thiele U. Symmetry-breaking, motion and bistability of active drops through polarization-surface coupling. SOFT MATTER 2022; 18:5823-5832. [PMID: 35899866 DOI: 10.1039/d2sm00648k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Cell crawling crucially depends on the collective dynamics of the acto-myosin cytoskeleton. However, it remains an open question to what extent cell polarization and persistent motion depend on continuous regulatory mechanisms and autonomous physical mechanisms. Experiments on cell fragments and theoretical considerations for active polar liquids have highlighted that physical mechanisms induce motility through splay and bend configurations in a nematic director field. Here, we employ a simple model, derived from basic thermodynamic principles, for active polar free-surface droplets to identify a different mechanism of motility. Namely, active stresses drive drop motion through spatial variations of polarization strength. This robustly induces parity-symmetry breaking and motility even for liquid ridges (2D drops) and adds to splay- and bend-driven pumping in 3D geometries. Intriguingly, then, stable polar moving and axisymmetric resting states may coexist, reminiscent of the interconversion of moving and resting keratocytes by external stimuli. The identified additional motility mode originates from a competition between the elastic bulk energy and the polarity control exerted by the drop surface. As it already breaks parity-symmetry for passive drops, the resulting back-forth asymmetry enables active stresses to effectively pump liquid and drop motion ensues.
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Affiliation(s)
- Fenna Stegemerten
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany
| | - Karin John
- Université Grenoble-Alpes, CNRS, Laboratoire Interdisciplinaire de Physique, 38000 Grenoble, France
| | - Uwe Thiele
- Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstr. 2, 48149 Münster, Germany.
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Henkel C, Snoeijer JH, Thiele U. Gradient-dynamics model for liquid drops on elastic substrates. SOFT MATTER 2021; 17:10359-10375. [PMID: 34747426 DOI: 10.1039/d1sm01032h] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The wetting of soft elastic substrates exhibits many features that have no counterpart on rigid surfaces. Modelling the detailed elastocapillary interactions is challenging, and has so far been limited to single contact lines or single drops. Here we propose a reduced long-wave model that captures the main qualitative features of statics and dynamics of soft wetting, but which can be applied to ensembles of droplets. The model has the form of a gradient dynamics on an underlying free energy that reflects capillarity, wettability and compressional elasticity. With the model we first recover the double transition in the equilibrium contact angles that occurs when increasing substrate softness from ideally rigid towards very soft (i.e., liquid). Second, the spreading of single drops of partially and completely wetting liquids is considered showing that known dependencies of the dynamic contact angle on contact line velocity are well reproduced. Finally, we go beyond the single droplet picture and consider the coarsening for a two-drop system as well as for a large ensemble of drops. It is shown that the dominant coarsening mode changes with substrate softness in a nontrivial way.
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Affiliation(s)
- Christopher Henkel
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany.
| | - Jacco H Snoeijer
- Physics of Fluids Group and J. M. Burgers Centre for Fluid Dynamics, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany.
- Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstr. 2, 48149 Münster, Germany
- Center for Multiscale Theory and Computation (CMTC), Westfälische Wilhelms-Universität, Corrensstr. 40, 48149 Münster, Germany
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Frohoff-Hülsmann T, Wrembel J, Thiele U. Suppression of coarsening and emergence of oscillatory behavior in a Cahn-Hilliard model with nonvariational coupling. Phys Rev E 2021; 103:042602. [PMID: 34006003 DOI: 10.1103/physreve.103.042602] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 03/04/2021] [Indexed: 12/27/2022]
Abstract
We investigate a generic two-field Cahn-Hilliard model with variational and nonvariational coupling. It describes, for instance, passive and active ternary mixtures, respectively. Already a linear stability analysis of the homogeneous mixed state shows that activity not only allows for the usual large-scale stationary (Cahn-Hilliard) instability of the well-known passive case but also for small-scale stationary (Turing) and large-scale oscillatory (Hopf) instabilities. In consequence of the Turing instability, activity may completely suppress the usual coarsening dynamics. In a fully nonlinear analysis, we first briefly discuss the passive case before focusing on the active case. Bifurcation diagrams and selected direct time simulations are presented that allow us to establish that nonvariational coupling (i) can partially or completely suppress coarsening and (ii) may lead to the emergence of drifting and oscillatory states. Throughout, we emphasize the relevance of conservation laws and related symmetries for the encountered intricate bifurcation behavior.
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Affiliation(s)
- Tobias Frohoff-Hülsmann
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany
| | - Jana Wrembel
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany.,Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstr. 2, 48149 Münster, Germany.,Center for Multiscale Theory and Computation (CMTC), Westfälische Wilhelms-Universität, Corrensstr. 40, 48149 Münster, Germany
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Wang H, Qian T, Xu X. Onsager's variational principle in active soft matter. SOFT MATTER 2021; 17:3634-3653. [PMID: 33480912 DOI: 10.1039/d0sm02076a] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Onsagers variational principle (OVP) was originally proposed by Lars Onsager in 1931 [L. Onsager, Phys. Rev., 1931, 37, 405]. This fundamental principle provides a very powerful tool for formulating thermodynamically consistent models. It can also be employed to find approximate solutions, especially in the study of soft matter dynamics. In this work, OVP is extended and applied to the dynamic modeling of active soft matter such as suspensions of bacteria and aggregates of animal cells. We first extend the general formulation of OVP to active matter dynamics where active forces are included as external non-conservative forces. We then use OVP to analyze the directional motion of individual active units: a molecular motor walking on a stiff biofilament and a toy two-sphere microswimmer. Next we use OVP to formulate a diffuse-interface model for an active polar droplet on a solid substrate. In addition to the generalized hydrodynamic equations for active polar fluids in the bulk region, we have also derived thermodynamically consistent boundary conditions. Finally, we consider the dynamics of a thin active polar droplet under the lubrication approximation. We use OVP to derive a generalized thin film equation and then employ OVP as an approximation tool to find the spreading laws for the thin active polar droplet. By incorporating the activity of biological systems into OVP, we develop a general approach to construct thermodynamically consistent models for better understanding the emergent behaviors of individual animal cells and cell aggregates or tissues.
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Affiliation(s)
- Haiqin Wang
- Technion - Israel Institute of Technology, Haifa, 32000, Israel
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-N Young Y, J Shelley M, B Stein D. The many behaviors of deformable active droplets. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021; 18:2849-2881. [PMID: 33892575 DOI: 10.3934/mbe.2021145] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Active fluids consume fuel at the microscopic scale, converting this energy into forces that can drive macroscopic motions over scales far larger than their microscopic constituents. In some cases, the mechanisms that give rise to this phenomenon have been well characterized, and can explain experimentally observed behaviors in both bulk fluids and those confined in simple stationary geometries. More recently, active fluids have been encapsulated in viscous drops or elastic shells so as to interact with an outer environment or a deformable boundary. Such systems are not as well understood. In this work, we examine the behavior of droplets of an active nematic fluid. We study their linear stability about the isotropic equilibrium over a wide range of parameters, identifying regions in which different modes of instability dominate. Simulations of their full dynamics are used to identify their nonlinear behavior within each region. When a single mode dominates, the droplets behave simply: as rotors, swimmers, or extensors. When parameters are tuned so that multiple modes have nearly the same growth rate, a pantheon of modes appears, including zigzaggers, washing machines, wanderers, and pulsators.
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Affiliation(s)
- Y -N Young
- Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, USA
| | - Michael J Shelley
- Center for Computational Biology, Flatiron Institute, New York, New York 10010, USA
- Courant Institute, New York University, New York, New York 10012, USA
| | - David B Stein
- Center for Computational Biology, Flatiron Institute, New York, New York 10010, USA
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Ophaus L, Kirchner J, Gurevich SV, Thiele U. Phase-field-crystal description of active crystallites: Elastic and inelastic collisions. CHAOS (WOODBURY, N.Y.) 2020; 30:123149. [PMID: 33380045 DOI: 10.1063/5.0019426] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 12/07/2020] [Indexed: 06/12/2023]
Abstract
The active Phase-Field-Crystal (aPFC) model combines elements of the Toner-Tu theory for self-propelled particles and the classical Phase-Field-Crystal (PFC) model that describes the transition between liquid and crystalline phases. In the liquid-crystal coexistence region of the PFC model, crystalline clusters exist in the form of localized states that coexist with a homogeneous background. At sufficiently strong activity (related to self-propulsion strength), they start to travel. We employ numerical path continuation and direct time simulations to first investigate the existence regions of different types of localized states in one spatial dimension. The results are summarized in morphological phase diagrams in the parameter plane spanned by activity and mean density. Then we focus on the interaction of traveling localized states, studying their collision behavior. As a result, we distinguish "elastic" and "inelastic" collisions. In the former, localized states recover their properties after a collision, while in the latter, they may completely or partially annihilate, forming resting bound states or various traveling states.
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Affiliation(s)
- Lukas Ophaus
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - Johannes Kirchner
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - Svetlana V Gurevich
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
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Lam MAYH, Kondic L, Cummings LJ. Effects of spatially-varying substrate anchoring on instabilities and dewetting of thin nematic liquid crystal films. SOFT MATTER 2020; 16:10187-10197. [PMID: 33103707 DOI: 10.1039/d0sm01416h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Partially wetting nematic liquid crystal (NLC) films on substrates are unstable to dewetting-type instabilities due to destabilizing solid/NLC interaction forces. These instabilities are modified by the nematic nature of the films, which influences the effective solid/NLC interaction. In this work, we focus on the influence of imposed substrate anchoring on the instability development. The analysis is carried out within a long-wave formulation based on the Leslie-Ericksen description of NLC films. Linear stability analysis of the resulting equations shows that some features of the instability, such as emerging wavelengths, may not be influenced by the imposed substrate anchoring. Going further into the nonlinear regime, considered via large-scale GPU-based simulations, shows however that nonlinear effects may play an important role, in particular in the case of strong substrate anchoring anisotropy. Our simulations show that instability of the film develops in two stages: the first stage involves formation of ridges that are perpendicular to the local anchoring direction; and the second involves breakup of these ridges and formation of drops, whose final distribution is influenced by the anisotropy imposed by the substrate. Finally, we show that imposing more complex substrate anisotropy patterns allows us to reach basic understanding of the influence of substrate-imposed defects in director orientation on the instability evolution.
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Affiliation(s)
- Michael-Angelo Y-H Lam
- U. S. Army Engineer Research and Development Center, Coastal and Hydraulics Laboratory, 3909 Halls Ferry Road, Vicksburg, MS 39180, USA.
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