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Astakhov AM, Petrovskii VS, Frolkina MA, Markina AA, Muratov AD, Valov AF, Avetisov VA. Spontaneous Vibrations and Stochastic Resonance of Short Oligomeric Springs. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 14:41. [PMID: 38202496 PMCID: PMC10780788 DOI: 10.3390/nano14010041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/15/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024]
Abstract
There is growing interest in molecular structures that exhibit dynamics similar to bistable mechanical systems. These structures have the potential to be used as two-state operating units for various functional purposes. Particularly intriguing are the bistable systems that display spontaneous vibrations and stochastic resonance. Previously, via molecular dynamics simulations, it was discovered that short pyridine-furan springs in water, when subjected to stretching with power loads, exhibit the bistable dynamics of a Duffing oscillator. In this study, we extend these simulations to include short pyridine-pyrrole and pyridine-furan springs in a hydrophobic solvent. Our findings demonstrate that these systems also display the bistable dynamics, accompanied by spontaneous vibrations and stochastic resonance activated by thermal noise.
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Affiliation(s)
- Alexey M. Astakhov
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Vladislav S. Petrovskii
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Maria A. Frolkina
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Anastasia A. Markina
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Alexander D. Muratov
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Alexander F. Valov
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
| | - Vladik A. Avetisov
- Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 119991 Moscow, Russia
- Design Center for Molecular Machines, 119991 Moscow, Russia
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2
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Thibado PM, Neu JC, Kumar P, Singh S, Bonilla LL. Charging capacitors from thermal fluctuations using diodes. Phys Rev E 2023; 108:024130. [PMID: 37723760 DOI: 10.1103/physreve.108.024130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 06/30/2023] [Indexed: 09/20/2023]
Abstract
We theoretically consider a graphene ripple as a Brownian particle coupled to an energy storage circuit. When circuit and particle are at the same temperature, the second law forbids harvesting energy from the thermal motion of the Brownian particle, even if the circuit contains a rectifying diode. However, when the circuit contains a junction followed by two diodes wired in opposition, the approach to equilibrium may become ultraslow. Detailed balance is temporarily broken as current flows between the two diodes and charges storage capacitors. The energy harvested by each capacitor comes from the thermal bath of the diodes while the system obeys the first and second laws of thermodynamics.
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Affiliation(s)
- P M Thibado
- Department of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA
| | - J C Neu
- Department of Mathematics, University of California, Berkeley, Berkeley, California 94720, USA
| | - Pradeep Kumar
- Department of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA
| | - Surendra Singh
- Department of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA
| | - L L Bonilla
- G. Millán Institute for Fluid Dynamics, Nanoscience and Industrial Mathematics and Department of Mathematics, Universidad Carlos III de Madrid, 28911 Leganés, Spain
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3
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García-Valladares G, Plata CA, Prados A. Buckling in a rotationally invariant spin-elastic model. Phys Rev E 2023; 107:014120. [PMID: 36797953 DOI: 10.1103/physreve.107.014120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 12/22/2022] [Indexed: 06/18/2023]
Abstract
Scanning tunneling microscopy experiments have revealed a spontaneous rippled-to-buckled transition in heated graphene sheets, in absence of any mechanical load. Several models relying on a simplified picture of the interaction between elastic and internal, electronic, degrees of freedom have been proposed to understand this phenomenon. Nevertheless, these models are not fully consistent with the classical theory of elasticity, since they do not preserve rotational invariance. Herein, we develop and analyze an alternative classical spin-elastic model that preserves rotational invariance while giving a qualitative account of the rippled-to-buckled transition. By integrating over the internal degrees of freedom, an effective free energy for the elastic modes is derived, which only depends on the curvature. Minimization of this free energy gives rise to the emergence of different mechanical phases, whose thermodynamic stability is thoroughly analyzed, both analytically and numerically. All phases are characterized by a spatially homogeneous curvature, which plays the role of the order parameter for the rippled-to-buckled transition, in both the one- and two-dimensional cases. In the latter, our focus is put on the honeycomb lattice, which is representative of actual graphene.
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Affiliation(s)
| | - Carlos A Plata
- Física Teórica, Universidad de Sevilla, Apartado de Correos 1065, E-41080 Sevilla, Spain
| | - Antonio Prados
- Física Teórica, Universidad de Sevilla, Apartado de Correos 1065, E-41080 Sevilla, Spain
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Gikunda MN, Harerimana F, Mangum JM, Rahman S, Thompson JP, Harris CT, Churchill HOH, Thibado PM. Array of Graphene Variable Capacitors on 100 mm Silicon Wafers for Vibration-Based Applications. MEMBRANES 2022; 12:membranes12050533. [PMID: 35629859 PMCID: PMC9147771 DOI: 10.3390/membranes12050533] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 05/03/2022] [Accepted: 05/12/2022] [Indexed: 11/29/2022]
Abstract
Highly flexible, electrically conductive freestanding graphene membranes hold great promise for vibration-based applications. This study focuses on their integration into mainstream semiconductor manufacturing methods. We designed a two-mask lithography process that creates an array of freestanding graphene-based variable capacitors on 100 mm silicon wafers. The first mask forms long trenches terminated by square wells featuring cone-shaped tips at their centers. The second mask fabricates metal traces from each tip to its contact pad along the trench and a second contact pad opposite the square well. A graphene membrane is then suspended over the square well to form a variable capacitor. The same capacitor structures were also built on 5 mm by 5 mm bare dies containing an integrated circuit underneath. We used atomic force microscopy, optical microscopy, and capacitance measurements in time to characterize the samples.
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Affiliation(s)
- Millicent N. Gikunda
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | - Ferdinand Harerimana
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | - James M. Mangum
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | - Sumaya Rahman
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | - Joshua P. Thompson
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | | | - Hugh O. H. Churchill
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
| | - Paul M. Thibado
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (M.N.G.); (F.H.); (J.M.M.); (S.R.); (J.P.T.); (H.O.H.C.)
- Correspondence:
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Fontana PW. Hidden Dissipation and Irreversibility in Maxwell's Demon. ENTROPY (BASEL, SWITZERLAND) 2022; 24:93. [PMID: 35052118 PMCID: PMC8774989 DOI: 10.3390/e24010093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 12/21/2021] [Accepted: 01/04/2022] [Indexed: 02/04/2023]
Abstract
Maxwell's demon is an entity in a 150-year-old thought experiment that paradoxically appears to violate the second law of thermodynamics by reducing entropy without doing work. It has increasingly practical implications as advances in nanomachinery produce devices that push the thermodynamic limits imposed by the second law. A well-known explanation claiming that information erasure restores second law compliance fails to resolve the paradox because it assumes the second law a priori, and does not predict irreversibility. Instead, a purely mechanical resolution that does not require information theory is presented. The transport fluxes of mass, momentum, and energy involved in the demon's operation are analyzed and show that they imply "hidden" external work and dissipation. Computing the dissipation leads to a new lower bound on entropy production by the demon. It is strictly positive in all nontrivial cases, providing a more stringent limit than the second law and implying intrinsic thermodynamic irreversibility. The thermodynamic irreversibility is linked with mechanical irreversibility resulting from the spatial asymmetry of the demon's speed selection criteria, indicating one mechanism by which macroscopic irreversibility may emerge from microscopic dynamics.
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Affiliation(s)
- Paul W Fontana
- Physics Department, Seattle University, 901 12th Ave., Seattle, WA 98122, USA
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Kocherginsky N. Biomimetic Membranes with Aqueous Nanochannels. Phase Transitions and Oscillations. MEMBRANES AND MEMBRANE TECHNOLOGIES 2021. [DOI: 10.1134/s2517751621060111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Avetisov VA, Frolkina MA, Markina AA, Muratov AD, Petrovskii VS. Short Pyridine-Furan Springs Exhibit Bistable Dynamics of Duffing Oscillators. NANOMATERIALS 2021; 11:nano11123264. [PMID: 34947612 PMCID: PMC8707925 DOI: 10.3390/nano11123264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 11/25/2021] [Accepted: 11/26/2021] [Indexed: 11/16/2022]
Abstract
The intensive development of nanodevices acting as two-state systems has motivated the search for nanoscale molecular structures whose dynamics are similar to those of bistable mechanical systems, such as Euler arches and Duffing oscillators. Of particular interest are the molecular structures capable of spontaneous vibrations and stochastic resonance. Recently, oligomeric molecules that were a few nanometers in size and exhibited the bistable dynamics of an Euler arch were identified through molecular dynamics simulations of short fragments of thermo-responsive polymers subject to force loading. In this article, we present molecular dynamics simulations of short pyridine-furan springs a few nanometers in size and demonstrate the bistable dynamics of a Duffing oscillator with thermally-activated spontaneous vibrations and stochastic resonance.
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Buta MC, Frecus B, Enache M, Humelnicu I, Toader AM, Cimpoesu F. Intra- and Inter-Molecular Spin Coupling in Phenalenyl Dimeric Systems. J Phys Chem A 2021; 125:6893-6901. [PMID: 34353026 DOI: 10.1021/acs.jpca.1c02705] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Phenalenyl is a triangular aromatic molecule made of three fused benzene rings, carrying an unpaired electron, and many of its derivatives show crystal structures with stacked radicals. Here, we investigate the inter-molecular binding in phenalenyl dimers by state-of-the-art computational methods and phenomenological models. Aside from being important for the supramolecular assembly of such radical molecules, the theoretical insight is relevant in methodological aspects, due to the interplay of long-range exchange coupling effects and van der Waals forces. We used comparative wave function-based and density functional theories. Drawing the potential energy surfaces as a function of inter-planar separation and mutual rotation of the monomer units, we found an interesting pattern which is not discovered in previous computational reports on the title systems. The dependence can be nicely interpreted by a transparent phenomenological model based on an orbital overlap paradigm of exchange coupling. We also brought forth a simplified phenomenological valence bond (VB) model of inter-molecular coupling, which is realized on the background of the VB spin model inside of the aromatic monomers and calibrated with the corresponding ab initio data. As the systems can be considered good candidates with potential applications in spintronics and organic magnetism, the theoretical rationalization opens up prospective ways to realize such promises.
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Affiliation(s)
- Maria C Buta
- Institute of Physical Chemistry, Splaiul Independentei 202, 060021 Bucharest, Romania
| | - Bogdan Frecus
- Institute of Physical Chemistry, Splaiul Independentei 202, 060021 Bucharest, Romania
| | - Mirela Enache
- Institute of Physical Chemistry, Splaiul Independentei 202, 060021 Bucharest, Romania
| | - Ionel Humelnicu
- Physical and Theoretical Chemistry Department, Alexandru Ioan Cuza University, Bulevardul Carol I, 700506 Iasi, Romania
| | - Ana M Toader
- Institute of Physical Chemistry, Splaiul Independentei 202, 060021 Bucharest, Romania
| | - Fanica Cimpoesu
- Institute of Physical Chemistry, Splaiul Independentei 202, 060021 Bucharest, Romania
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Mangum JM, Harerimana F, Gikunda MN, Thibado PM. Mechanisms of Spontaneous Curvature Inversion in Compressed Graphene Ripples for Energy Harvesting Applications via Molecular Dynamics Simulations. MEMBRANES 2021; 11:516. [PMID: 34357166 PMCID: PMC8306715 DOI: 10.3390/membranes11070516] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 06/30/2021] [Accepted: 07/06/2021] [Indexed: 12/03/2022]
Abstract
Electrically conductive, highly flexible graphene membranes hold great promise for harvesting energy from ambient vibrations. For this study, we built numerous three-dimensional graphene ripples, with each featuring a different amount of compression, and performed molecular dynamics simulations at elevated temperatures. These ripples have a convex cosine shape, then spontaneously invert their curvature to concave. The average time between inversion events increases with compression. We use this to determine how the energy barrier height depends on strain. A typical convex-to-concave curvature inversion process begins when the ripple's maximum shifts sideways from the normal central position toward the fixed outer edge. The ripple's maximum does not simply move downward toward its concave position. When the ripple's maximum moves toward the outer edge, the opposite side of the ripple is pulled inward and downward, and it passes through the fixed outer edge first. The ripple's maximum then quickly flips to the opposite side via snap-through buckling. This trajectory, along with local bond flexing, significantly lowers the energy barrier for inversion. The large-scale coherent movement of ripple atoms during curvature inversion is unique to two-dimensional materials. We demonstrate how this motion can induce an electrical current in a nearby circuit.
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Affiliation(s)
| | | | | | - Paul M. Thibado
- Department of Physics, University of Arkansas, Fayetteville, AR 72701, USA; (J.M.M.); (F.H.); (M.N.G.)
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