1
|
Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla. Nat Commun 2022; 13:5861. [PMID: 36195609 PMCID: PMC9532449 DOI: 10.1038/s41467-022-33499-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 09/21/2022] [Indexed: 11/08/2022] Open
Abstract
Gene flow governs the contemporary spatial structure and dynamic of populations as well as their long-term evolution. For species that disperse using atmospheric or oceanic flows, biophysical models allow predicting the migratory component of gene flow, which facilitates the interpretation of broad-scale spatial structure inferred from observed allele frequencies among populations. However, frequent mismatches between dispersal estimates and observed genetic diversity prevent an operational synthesis for eco-evolutionary projections. Here we use an extensive compilation of 58 population genetic studies of 47 phylogenetically divergent marine sedentary species over the Mediterranean basin to assess how genetic differentiation is predicted by Isolation-By-Distance, single-generation dispersal and multi-generation dispersal models. Unlike previous approaches, the latter unveil explicit parents-to-offspring links (filial connectivity) and implicit links among siblings from a common ancestor (coalescent connectivity). We find that almost 70 % of observed variance in genetic differentiation is explained by coalescent connectivity over multiple generations, significantly outperforming other models. Our results offer great promises to untangle the eco-evolutionary forces that shape sedentary population structure and to anticipate climate-driven redistributions, altogether improving spatial conservation planning.
Collapse
|
2
|
Fellini S, Salizzoni P, Ridolfi L. Vulnerability of cities to toxic airborne releases is written in their topology. Sci Rep 2021; 11:23029. [PMID: 34845266 PMCID: PMC8630004 DOI: 10.1038/s41598-021-02403-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 11/09/2021] [Indexed: 11/09/2022] Open
Abstract
The incidental or malicious release of toxic gases in the atmosphere is one of the most critical scenarios for cities. The impact of these releases varies with the ventilation potential of the urban environment. To disentangle this crucial aspect, vulnerability to airborne releases is here traced back to essential properties of the urban fabric. To this aim, pollutant dispersion is disassembled in its fundamental bricks and the main drivers of the process are captured. The analysis is based on four cities with emblematic architectures: Paris, Firenze, Lyon and New York. Results show that vulnerability is driven by the topology of the city and by its interaction with the approaching wind. In this sense, fragility to toxic releases is written in the layout of the urban fabric and results from its historical evolution. This study paves the way to the assessment of air pollution-related issues from a morphological point of view.
Collapse
Affiliation(s)
- Sofia Fellini
- Laboratoire de Mécanique des Fluides et d'Acoustique, UMR CNRS 5509, Université de Lyon, École Centrale de Lyon, INSA Lyon, Université Claude Bernard Lyon I, 69134, Écully, France. .,Department of Environmental, Land and Infrastructure Engineering, Politecnico di Torino, 10129, Turin, Italy.
| | - Pietro Salizzoni
- grid.7849.20000 0001 2150 7757Laboratoire de Mécanique des Fluides et d’Acoustique, UMR CNRS 5509, Université de Lyon, École Centrale de Lyon, INSA Lyon, Université Claude Bernard Lyon I, 69134 Écully, France
| | - Luca Ridolfi
- grid.4800.c0000 0004 1937 0343Department of Environmental, Land and Infrastructure Engineering, Politecnico di Torino, 10129 Turin, Italy
| |
Collapse
|
3
|
Ser-Giacomi E, Baudena A, Rossi V, Follows M, Clayton S, Vasile R, López C, Hernández-García E. Lagrangian betweenness as a measure of bottlenecks in dynamical systems with oceanographic examples. Nat Commun 2021; 12:4935. [PMID: 34400636 PMCID: PMC8368092 DOI: 10.1038/s41467-021-25155-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 07/22/2021] [Indexed: 11/08/2022] Open
Abstract
The study of connectivity patterns in networks has brought novel insights across diverse fields ranging from neurosciences to epidemic spreading or climate. In this context, betweenness centrality has demonstrated to be a very effective measure to identify nodes that act as focus of congestion, or bottlenecks, in the network. However, there is not a way to define betweenness outside the network framework. By analytically linking dynamical systems and network theory, we provide a trajectory-based formulation of betweenness, called Lagrangian betweenness, as a function of Lyapunov exponents. This extends the concept of betweenness beyond the context of network theory relating hyperbolic points and heteroclinic connections in any dynamical system to the structural bottlenecks of the network associated with it. Using modeled and observational velocity fields, we show that such bottlenecks are present and surprisingly persistent in the oceanic circulation across different spatio-temporal scales and we illustrate the role of these areas in driving fluid transport over vast oceanic regions. Analyzing plankton abundance data from the Kuroshio region of the Pacific Ocean, we find significant spatial correlations between measures of diversity and betweenness, suggesting promise for ecological applications.
Collapse
Affiliation(s)
- Enrico Ser-Giacomi
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
| | - Alberto Baudena
- Sorbonne Université,CNRS, Laboratoire d'Océanographie de Villefranche, UMR 7093 LOV, Villefranche‑sur‑Mer, France, Villefranche-sur-Mer, France
| | - Vincent Rossi
- Mediterranean Institute of Oceanography (UM110, UMR 7294), CNRS, Aix Marseille Univ., Univ. Toulon, IRD, Marseille, France
| | - Mick Follows
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | | | - Ruggero Vasile
- UP Transfer GmbH, Potsdam, Germany
- GFZ German Research Centre for Geosciences, Potsdam, Germany
| | - Cristóbal López
- IFISC (CSIC-UIB), Instituto de Física Interdisciplinar y Sistemas Complejos, Palma de Mallorca, Spain
| | - Emilio Hernández-García
- IFISC (CSIC-UIB), Instituto de Física Interdisciplinar y Sistemas Complejos, Palma de Mallorca, Spain
| |
Collapse
|