Diffusion-mediated reactions with a time-dependent absorption rate

Diffusive transport in the presence of stochastically gated absorption

We analyze a population of Brownian particles moving in a spatially uniform environment with stochastically gated absorption. The state of the environment at time t is represented by a discrete stochastic variable k(t)∈{0,1} such that the rate of absorption is γ[1-k(t)], with γ a positive constant. The variable k(t) evolves according to a two-state Markov chain. We focus on how stochastic gating affects the attenuation of particle absorption with distance from a localized source in a one-dimensional domain. In the static case (no gating), the steady-state attenuation is given by an exponential with length constant sqrt[D/γ], where D is the diffusivity. We show that gating leads to slower, nonexponential attenuation. We also explore statistical correlations between particles due to the fact that they all diffuse in the same switching environment. Such correlations can be determined in terms of moments of the solution to a corresponding stochastic Fokker-Planck equation.

Enhanced transport through desorption-mediated diffusion

We present a master equation approach to the study of the bulk-mediated surface diffusion mechanism in a three-dimensional confined domain. The proposed scheme allowed us to evaluate analytically a number of magnitudes that were used to characterize the efficiency of the bulk-mediated surface transport mechanism, for instance, the mean escape time from the domain, and the mean number of distinct visited sites on the confined domain boundary.

Narrow-escape-time problem: the imperfect trapping case

We present a master equation approach to the narrow escape time (NET) problem, i.e., the time needed for a particle contained in a confining domain with a single narrow opening to exit the domain for the first time. We introduce a finite transition probability, ν, at the narrow escape window, allowing the study of the imperfect trapping case. Ranging from 0 to ∞, ν allowed the study of both extremes of the trapping process: that of a highly deficient capture and situations where escape is certain ("perfect trapping" case). We have obtained analytic results for the basic quantity studied in the NET problem, the mean escape time, and we have studied its dependence in terms of the transition (desorption) probability over (from) the surface boundary, the confining domain dimensions, and the finite transition probability at the escape window. Particularly we show that the existence of a global minimum in the NET depends on the "imperfection" of the trapping process. In addition to our analytical approach, we have implemented Monte Carlo simulations, finding excellent agreement between the theoretical results and simulations.

Phase transition in the bounded one-dimensional multitrap system

We have previously discussed the diffusion limited problem of the bounded one-dimensional multitrap system where no external field is present, and pay special attention to the transmission of the diffusing particles through the imperfect traps. We discuss here the case in which an external field is included to each trap and find not only the transmission but also the energy associated with the diffusing particles in the presence and absence of such a field. From the energy we find the specific heat C(h) and show that for certain values of the parameters associated with the multitrap system it behaves in a manner which is suggestive of phase transition. Moreover, this phase transition is demonstrated not only through the conventional single peak at which the specific heat function is undifferentiable but also through the less frequent phenomenon of double peaks.

Diffusion-limited reaction for the one-dimensional trap system

We have previously discussed the one-dimensional multitrap system of finite range and found somewhat unexpected result that the larger is the number of imperfect traps the higher is the transmission through them. We discuss in this work the effect of a small number of such traps arrayed along either a constant or a variable finite spatial section. It is shown that under specific conditions, to be described in the following, the remarked high transmission may be obtained for this case also. Thus, compared to the theoretical large number of traps case these results may be experimentally applied to real phenomena.

Diffusion-limited reaction in the presence of n traps

We solve the problem of a one-dimensional array of n imperfect traps. These traps are physically represented by small regions of space (in the one-dimensional version we discuss here these traps are represented by small sections of the x axis) with a smaller diffusion constant than that outside them. Small physical particles of one kind diffuse outside and through these small sections. In this work we investigate the changes of the particles density incurred by the presence of these traps. We also check how this density behaves when the density of traps becomes very large.