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Belowground feedbacks as drivers of spatial self-organization and community assembly. Phys Life Rev 2021; 38:1-24. [PMID: 34334324 DOI: 10.1016/j.plrev.2021.07.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 07/12/2021] [Indexed: 02/03/2023]
Abstract
Vegetation patterning in water-limited and other resource-limited ecosystems highlights spatial self-organization processes as potentially key drivers of community assembly. These processes provide insight into predictable landscape-level relationships between organisms and their abiotic environment in the form of regular and irregular patterns of biota and resources. However, two aspects have largely been overlooked; the roles played by plant - soil-biota feedbacks and allelopathy in spatial self-organization, and their potential contribution, along with plant-resource feedbacks, to community assembly through spatial self-organization. Here, we expand the drivers of spatial self-organization from a focus on plant-resource feedbacks to include plant - soil-biota feedbacks and allelopathy, and integrate concepts of nonlinear physics and community ecology to generate a new hypothesis. According to this hypothesis, below-ground processes can affect community assemblages through two types of spatial self-organization, global and local. The former occurs simultaneously across whole ecosystems, leading to self-organized patterns of biota, allelochemicals and resources, and niche partitioning. The latter occurs locally in ecotones, and determines ecotone structure and motion, invasion dynamics, and species coexistence. Studies of the two forms of spatial self-organization are important for understanding the organization of plant communities in drier climates which are likely to involve spatial patterning or re-patterning. Such studies are also important for developing new practices of ecosystem management, based on local manipulations at ecotones, to slow invasion dynamics or induce transitions from transitive to intransitive networks of interspecific interactions which increase species diversity.
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2
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Paul S, Pal K, Ray DS. Parametric instability-induced synchronization in chemical oscillations and spatiotemporal patterns. Phys Rev E 2020; 102:052209. [PMID: 33327123 DOI: 10.1103/physreve.102.052209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 10/25/2020] [Indexed: 11/07/2022]
Abstract
We consider a model reaction-diffusion system with two coupled layers in which one of the components in a layer is parametrically driven by a periodic force. On perturbation of a homogeneous stable steady state, the system exhibits parametric instability inducing synchronization in temporal oscillation at half the forcing frequency in absence of diffusion and spatiotemporal patterns in presence of diffusion, when strength of parametric forcing and the strength of coupling are kept above their critical thresholds. We have formulated a general scheme to derive analytically the critical thresholds and dispersion relation to locate the unstable spatial modes lying between the tilted Arnold tongue in the amplitude-frequency plot. Full numerical simulations on Gierer-Meinhardt activator-inhibitor model corroborate our theoretical analysis on parametric instability-induced antiphase synchronization in chemical oscillation and spatiotemporal pattern formation, between the two layers.
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Affiliation(s)
- Shibashis Paul
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
| | - Krishnendu Pal
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
| | - Deb Shankar Ray
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
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3
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Toth R, Taylor AF. The Tris(2,2'-Bipyridyl)Ruthenium-Catalysed Belousov–Zhabotinsky Reaction. PROGRESS IN REACTION KINETICS AND MECHANISM 2019. [DOI: 10.3184/007967406779946928] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The Belousov – Zhabotinsky (BZ) reaction is the prototypical oscillating chemical reaction. The tris(2,2'-bipyridine)ruthenium-catalysed BZ reaction (often simply referred to as the ruthenium-catalysed BZ reaction) displays photosensitivity and has been widely exploited for examination of the effects of illumination on nonlinear reaction kinetics. In this review, we investigate the behaviour of the ruthenium-catalysed BZ reaction. The mechanism of the reaction is analysed and we examine how light sensitivity is incorporated into kinetic models of the reaction. The temporal dynamics of the photosensitive reaction is presented and, finally, we discuss the extraordinary wealth of behaviour that has been observed in the spatially-distributed system when perturbed by visible light.
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Affiliation(s)
- Rita Toth
- University of the West of England, Bristol, UK
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4
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Weiss S, Deegan RD. Weakly and strongly coupled Belousov-Zhabotinsky patterns. Phys Rev E 2017; 95:022215. [PMID: 28297951 DOI: 10.1103/physreve.95.022215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Indexed: 06/06/2023]
Abstract
We investigate experimentally and numerically the synchronization of two-dimensional spiral wave patterns in the Belousov-Zhabotinsky reaction due to point-to-point coupling of two separate domains. Different synchronization modalities appear depending on the coupling strength and the initial patterns in each domain. The behavior as a function of the coupling strength falls into two qualitatively different regimes. The weakly coupled regime is characterized by inter-domain interactions that distorted but do not break wave fronts. Under weak coupling, spiral cores are pushed around by wave fronts in the other domain, resulting in an effective interaction between cores in opposite domains. In the case where each domain initially contains a single spiral, the cores form a bound pair and orbit each other at quantized distances. When the starting patterns consist of multiple randomly positioned spiral cores, the number of cores decreases with time until all that remains are a few cores that are synchronized with a partner in the other domain. The strongly coupled regime is characterized by interdomain interactions that break wave fronts. As a result, the wave patterns in both domains become identical.
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Affiliation(s)
- Stephan Weiss
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), 37077 Göttingen, Germany
| | - Robert D Deegan
- Center for the Study of Complex Systems, University of Michigan, Ann Arbor, Michigan 48109, USA
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5
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Ghosh S, Ray DS. Parametric spatiotemporal oscillation in reaction-diffusion systems. Phys Rev E 2016; 93:032209. [PMID: 27078346 DOI: 10.1103/physreve.93.032209] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Indexed: 06/05/2023]
Abstract
We consider a reaction-diffusion system in a homogeneous stable steady state. On perturbation by a time-dependent sinusoidal forcing of a suitable scaling parameter the system exhibits parametric spatiotemporal instability beyond a critical threshold frequency. We have formulated a general scheme to calculate the threshold condition for oscillation and the range of unstable spatial modes lying within a V-shaped region reminiscent of Arnold's tongue. Full numerical simulations show that depending on the specificity of nonlinearity of the models, the instability may result in time-periodic stationary patterns in the form of standing clusters or spatially localized breathing patterns with characteristic wavelengths. Our theoretical analysis of the parametric oscillation in reaction-diffusion system is corroborated by full numerical simulation of two well-known chemical dynamical models: chlorite-iodine-malonic acid and Briggs-Rauscher reactions.
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Affiliation(s)
- Shyamolina Ghosh
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
| | - Deb Shankar Ray
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
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6
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Butzhammer L, Völkel S, Rehberg I, Huang K. Pattern formation in wet granular matter under vertical vibrations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:012202. [PMID: 26274155 DOI: 10.1103/physreve.92.012202] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Indexed: 06/04/2023]
Abstract
Experiments on a thin layer of cohesive wet granular matter under vertical vibrations reveal kink-separated domains that collide with the container at different phases. Due to the strong cohesion arising from the formation of liquid bridges between adjacent particles, the domains move collectively upon vibrations. Depending on the periodicity of this collective motion, the kink fronts may propagate, couple with each other, and form rotating spiral patterns in the case of period tripling or stay as standing wave patterns in the case of period doubling. Moreover, both patterns may coexist with granular "gas bubbles"-phase separation into a liquidlike and a gaslike state. Stability diagrams for the instabilities measured with various granular layer mass m and container height H are presented. The onsets for both types of patterns and their dependency on m and H can be quantitatively captured with a model considering the granular layer as a single particle colliding completely inelastically with the container.
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Affiliation(s)
| | - Simeon Völkel
- Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth, Germany
| | - Ingo Rehberg
- Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth, Germany
| | - Kai Huang
- Experimentalphysik V, Universität Bayreuth, 95440 Bayreuth, Germany
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Español MI, Rotstein HG. Complex mixed-mode oscillatory patterns in a periodically forced excitable Belousov-Zhabotinsky reaction model. CHAOS (WOODBURY, N.Y.) 2015; 25:064612. [PMID: 26117137 DOI: 10.1063/1.4922715] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The Oregonator is the simplest chemically plausible model for the Belousov-Zhabotinsky reaction. We investigate the response of the Oregonator to sinusoidal inputs with amplitudes and frequencies within plausible ranges. We focus on a regime where the unforced Oregonator is excitable (with no sustained oscillations). We use numerical simulations and dynamical systems tools to both characterize the response patterns and explain the underlying dynamic mechanisms.
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Affiliation(s)
- Malena I Español
- Department of Mathematics, The University of Akron, Akron, Ohio 44325, USA
| | - Horacio G Rotstein
- Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey 07102, USA
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8
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Haim L, Mau Y, Meron E. Spatial forcing of pattern-forming systems that lack inversion symmetry. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:022904. [PMID: 25215796 DOI: 10.1103/physreve.90.022904] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Indexed: 06/03/2023]
Abstract
The entrainment of periodic patterns to spatially periodic parametric forcing is studied. Using a weak nonlinear analysis of a simple pattern formation model we study the resonant responses of one-dimensional systems that lack inversion symmetry. Focusing on the first three n:1 resonances, in which the system adjusts its wavenumber to one nth of the forcing wavenumber, we delineate commonalities and differences among the resonances. Surprisingly, we find that all resonances show multiplicity of stable phase states, including the 1:1 resonance. The phase states in the 2:1 and 3:1 resonances, however, differ from those in the 1:1 resonance in remaining symmetric even when the inversion symmetry is broken. This is because of the existence of a discrete translation symmetry in the forced system. As a consequence, the 2:1 and 3:1 resonances show stationary phase fronts and patterns, whereas phase fronts within the 1:1 resonance are propagating and phase patterns are transients. In addition, we find substantial differences between the 2:1 resonance and the other two resonances. While the pattern forming instability in the 2:1 resonance is supercritical, in the 1:1 and 3:1 resonances it is subcritical, and while the inversion asymmetry extends the ranges of resonant solutions in the 1:1 and 3:1 resonances, it has no effect on the 2:1 resonance range. We conclude by discussing a few open questions.
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Affiliation(s)
- Lev Haim
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel and Department of Oncology, Soroka University Medical Center, Beer Sheva, 84101, Israel
| | - Yair Mau
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel and Department of Civil and Environmental Engineering, Duke University, Durham, North Carolina 27708, USA
| | - Ehud Meron
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel and Department of Solar Energy and Environmental Physics, BIDR, Ben-Gurion University of the Negev, Sede Boqer Campus, 84990, Israel
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Haim L, Hagberg A, Nagao R, Steinberg AP, Dolnik M, Epstein IR, Meron E. Fronts and patterns in a spatially forced CDIMA reaction. Phys Chem Chem Phys 2014; 16:26137-43. [DOI: 10.1039/c4cp04261a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We use experiments on a chemical reaction and model analysis to study localized phase fronts in stripe patterns and their roles as building blocks of extended rectangular and oblique patterns.
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Affiliation(s)
- Lev Haim
- Physics Department
- Ben-Gurion University of the Negev
- Beer-Sheva 84105, Israel
- Department of Oncology
- Soroka University Medical Center
| | - Aric Hagberg
- Center for Nonlinear Studies
- Theoretical Division
- Los Alamos National Laboratory
- Los Alamos, USA
| | - Raphael Nagao
- Department of Chemistry and Volen Center for Complex Systems
- MS 015
- Brandeis University
- Waltham, USA
- Department of Chemistry
| | - Asher Preska Steinberg
- Division of Chemistry and Chemical Engineering
- California Institute of Technology
- Pasadena, USA
| | - Milos Dolnik
- Department of Chemistry and Volen Center for Complex Systems
- MS 015
- Brandeis University
- Waltham, USA
| | - Irving R. Epstein
- Department of Chemistry and Volen Center for Complex Systems
- MS 015
- Brandeis University
- Waltham, USA
| | - Ehud Meron
- Physics Department
- Ben-Gurion University of the Negev
- Beer-Sheva 84105, Israel
- Department of Solar Energy and Environmental Physics
- BIDR
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10
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Berenstein I, Beta C. Spatiotemporal chaos arising from standing waves in a reaction-diffusion system with cross-diffusion. J Chem Phys 2012; 136:034903. [DOI: 10.1063/1.3676577] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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11
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Sadeghi S, Thompson M. Towards information processing from nonlinear physical chemistry: A synthetic electrochemical cognitive system. Biosystems 2010; 102:99-111. [DOI: 10.1016/j.biosystems.2010.08.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2010] [Accepted: 08/02/2010] [Indexed: 10/19/2022]
Affiliation(s)
- Saman Sadeghi
- Crump Institute for Molecular Imaging, UCLA, 570 Westwood Plaza, Building 114, Los Angeles, CA 90095, USA.
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12
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Krefting D, Kaira P, Rotermund HH. Period doubling and spatiotemporal chaos in periodically forced CO oxidation on Pt(110). PHYSICAL REVIEW LETTERS 2009; 102:178301. [PMID: 19518840 DOI: 10.1103/physrevlett.102.178301] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2008] [Indexed: 05/27/2023]
Abstract
Periodic forcing of chemical turbulence in the catalytic CO oxidation on Pt(110) can induce a period doubling cascade to chaos. Using a forcing frequency near the second harmonic of the system's natural frequency, and carefully increasing the forcing amplitude, the system successively exhibits spiral wave turbulence, resonant pattern formation, and chaotic oscillations. In the latter case, global coupling induces strong spatial correlation. Experimental results are presented as well as numerical simulations using a realistic model. Good agreement is found between experiment and theory. The results give further insight into the complex nature of reaction-diffusion systems and are of high importance regarding control strategies on such systems. The presented setup enhances the range of achievable dynamical states and allows for new experimental investigations on the dynamics of extended oscillatory systems.
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Affiliation(s)
- Dagmar Krefting
- Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin (CBF), Hindenburgdamm 30, 12200 Berlin, Germany
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13
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Vanag VK, Epstein IR. Design and control of patterns in reaction-diffusion systems. CHAOS (WOODBURY, N.Y.) 2008; 18:026107. [PMID: 18601509 DOI: 10.1063/1.2900555] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We discuss the design of reaction-diffusion systems that display a variety of spatiotemporal patterns. We also consider how these patterns may be controlled by external perturbation, typically using photochemistry or temperature. Systems treated include the Belousov-Zhabotinsky (BZ) reaction, the chlorite-iodide-malonic acid and chlorine dioxide-malonic acid-iodine reactions, and the BZ-AOT system, i.e., the BZ reaction in a water-in-oil reverse microemulsion stabilized by the surfactant sodium bis(2-ethylhexyl) sulfosuccinate (AOT).
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Affiliation(s)
- Vladimir K Vanag
- Department of Chemistry and Volen Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02454-9110, USA
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14
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Kaira P, Bodega PS, Punckt C, Rotermund HH, Krefting D. Pattern formation in 4:1 resonance of the periodically forced CO oxidation on Pt(110). PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:046106. [PMID: 18517689 DOI: 10.1103/physreve.77.046106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2008] [Indexed: 05/26/2023]
Abstract
Periodically forced oscillatory reaction-diffusion systems may show complex spatiotemporal patterns. At high-frequency resonant forcing, multiple-phase patterns can be found. In the present work, the dynamics of turbulent CO oxidation on Pt(110), forced with the fourth harmonic of the system's natural frequency, is investigated. Experiments result in subharmonic entrainment, where the system locks to a quarter of the forcing frequency. Cluster patterns are observed, where different parts of the pattern show a defined phase difference. The experimental results are compared with numerical simulations using the realistic Krischer-Eiswirth-Ertl model for catalytic CO oxidation. Using the fourth harmonic of an uncoupled surface element's natural frequency, we find 3:1 entrainment with three-phase cluster patterns in a wide parameter range of forcing amplitudes and frequency detuning. Numerical analysis of the spatially extended, turbulent system reveals a remarkable upshift of the mean oscillation frequency compared to homogeneous oscillations. Using the fourth harmonic of the most prominent frequency found in the turbulent system results in four-phase patterns with partial or full 4:1 entrainment, depending on the forcing parameters chosen.
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Affiliation(s)
- Prabha Kaira
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
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15
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Marts B, Lin AL. Transition from traveling to standing waves in the 4:1 resonant Belousov-Zhabotinsky reaction. Phys Rev E 2008; 77:026211. [PMID: 18352107 DOI: 10.1103/physreve.77.026211] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2007] [Indexed: 11/07/2022]
Abstract
We report a transition from traveling to standing domain walls in a parametrically forced two-dimensional oscillatory Belousov-Zhabotinsky chemical reaction in 4:1 resonance. Our experimental results demonstrate spatiotemporal solutions not predicted by previous analytic results of the complex Ginzburg-Landau amplitude equation and numerical results from reaction-diffusion models. In addition to the stationary pi fronts at high forcing amplitudes, the 4:1 resonant patterns we observe include stationary pi/2 fronts.
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Affiliation(s)
- Bradley Marts
- Center for Nonlinear and Complex Systems, Department of Physics, Duke University, Durham, North Carolina 27708, USA
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16
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Bajaj C, Zhang Y, Xu G. Physically-based Surface Texture Synthesis Using a Coupled Finite Element System. GEOMETRIC MODELING AND PROCESSING : GMP ... INTERNATIONAL CONFERENCE ... PROCEEDINGS. GEOMETRIC MODELING AND PROCESSING (CONFERENCE) 2008; 2008:344-357. [PMID: 21625294 PMCID: PMC3103232 DOI: 10.1007/978-3-540-79246-8_26] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
This paper describes a stable and robust finite element solver for physically-based texture synthesis over arbitrary manifold surfaces. Our approach solves the reaction-diffusion equation coupled with an anisotropic diffusion equation over surfaces, using a Galerkin based finite element method (FEM). This method avoids distortions and discontinuities often caused by traditional texture mapping techniques, especially for arbitrary manifold surfaces. Several varieties of textures are obtained by selecting different values of control parameters in the governing differential equations, and furthermore enhanced quality textures are generated by fairing out noise in input surface meshes.
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Affiliation(s)
- Chandrajit Bajaj
- Department of Computer Sciences and Institute for Computational Engineering and Sciences, The University of Texas at Austin, USA.
| | - Yongjie Zhang
- Department of Mechanical Engineering, Carnegie Mellon University, USA.
| | - Guoliang Xu
- Institute of Computational Mathematics, Academy of Mathematics and System Sciences, Chinese Academy of Sciences, China.
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17
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Wang H, Zhang K, Ouyang Q. Resonant-pattern formation induced by additive noise in periodically forced reaction-diffusion systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:036210. [PMID: 17025732 DOI: 10.1103/physreve.74.036210] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2006] [Revised: 08/16/2006] [Indexed: 05/12/2023]
Abstract
We report frequency-locked resonant patterns induced by additive noise in periodically forced reaction-diffusion Brusselator model. In the regime of 2:1 frequency-locking and homogeneous oscillation, the introduction of additive noise, which is colored in time and white in space, generates and sustains resonant patterns of hexagons, stripes, and labyrinths which oscillate at half of the forcing frequency. Both the noise strength and the correlation time control the pattern formation. The system transits from homogeneous to hexagons, stripes, and to labyrinths successively as the noise strength is adjusted. Good frequency-locked patterns are only sustained by the colored noise and a finite time correlation is necessary. At the limit of white noise with zero temporal correlation, irregular patterns which are only nearly resonant come out as the noise strength is adjusted. The phenomenon induced by colored noise in the forced reaction-diffusion system is demonstrated to correspond to noise-induced Turing instability in the corresponding forced complex Ginzburg-Landau equation.
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Affiliation(s)
- Hongli Wang
- Department of Physics, Peking University, Beijing 100871, People's Republic of China
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18
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Hoffmann P, Wehner S, Schmeisser D, Brand HR, Küppers J. Noise-induced spatiotemporal patterns in a bistable reaction-diffusion system: photoelectron emission microscopy experiments and modeling of the oxidation reaction on Ir(111). PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 73:056123. [PMID: 16803014 DOI: 10.1103/physreve.73.056123] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2006] [Indexed: 05/10/2023]
Abstract
We use photoelectron emission microscopy (PEEM) measurements to study the spatiotemporal patterns obtained for the CO oxidation reaction on Ir(111) as a function of the noise strength we superpose on the CO and the oxygen fractions of the constant total reactant gas flux. The investigations are focused on the bistable regime this reaction displays including its monostable vicinity. Simultaneously we analyze numerically the underlying reaction-diffusion (RD) equations in two spatial dimensions. For intrinsic and/or small strength of the external noise we find transitions from the locally stable to the globally stable branch via slow nucleation and growth of islands of the globally stable state: oxygen or CO, respectively. With increasing noise strength the number of islands as well as their growth rate increases. These phenomena are very well reproduced by numerical calculations of the RD model. For sufficiently large noise strength we observe bursts from CO rich to oxygen rich and back as well as switching between the two states. While such phenomena are also obtained from the model calculations, their experimentally observed spatial scales were not satisfactorily reproduced using the same approach as for the lower noise strengths.
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Affiliation(s)
- Patrick Hoffmann
- Angewandte Physik II, Brandenburgische Technische Universität Cottbus, Germany
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González-Avella JC, Eguíluz VM, Cosenza MG, Klemm K, Herrera JL, San Miguel M. Local versus global interactions in nonequilibrium transitions: A model of social dynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 73:046119. [PMID: 16711890 DOI: 10.1103/physreve.73.046119] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2006] [Indexed: 05/09/2023]
Abstract
A nonequilibrium system of locally interacting elements in a lattice with an absorbing order-disorder phase transition is studied under the effect of additional interacting fields. These fields are shown to produce interesting effects in the collective behavior of this system. Both for autonomous and external fields, disorder grows in the system when the probability of the elements to interact with the field is increased. There exists a threshold value of this probability beyond which the system is always disordered. The domain of parameters of the ordered regime is larger for nonuniform local fields than for spatially uniform fields. However, the zero field limit is discontinous. In the limit of vanishingly small probability of interaction with the field, autonomous or external fields are able to order a system that would fall in a disordered phase under local interactions of the elements alone. We consider different types of fields which are interpreted as forms of mass media acting on a social system in the context of Axelrod's model for cultural dissemination.
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Affiliation(s)
- J C González-Avella
- Instituto Mediterráneo de Estudios Avanzados IMEDEA (CSIC-UIB), Campus Universitat Illes Balears, E-07122 Palma de Mallorca, Spain
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20
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Smolka LB, Marts B, Lin AL. Effect of inhomogeneities on spiral wave dynamics in the Belousov-Zhabotinsky reaction. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:056205. [PMID: 16383725 DOI: 10.1103/physreve.72.056205] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2005] [Indexed: 05/05/2023]
Abstract
We examine the effects of controlled, slowly varying spatial inhomogeneities on spiral wave dynamics in the light sensitive Belousov-Zhabotinsky chemical reaction-diffusion system. We measure the speed of the grain boundary that separates two spirals, the speed of the lower frequency spiral being swept away by the grain boundary, and the speed of the slow drift of the highest frequency spiral. The grain boundary speeds are shown to be related to the frequency of rotation and wave number of the spiral pattern, as predicted from analysis of the complex Ginzburg-Landau equation [M. Hendrey, Phys. Rev. Lett.10.1103/PhysRevLett.82.859 82, 859 (1999); M. Hendrey,, Phys. Rev. E10.1103/PhysRevE.61.4943 61, 4943 (2000)].
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Affiliation(s)
- Linda B Smolka
- Department of Mathematics, Duke University, Durham, North Carolina 27708, USA.
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Davidsen J, Mikhailov A, Kapral R. Front explosion in a periodically forced surface reaction. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 72:046214. [PMID: 16383519 DOI: 10.1103/physreve.72.046214] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2005] [Indexed: 05/05/2023]
Abstract
Resonantly forced oscillatory reaction-diffusion systems can exhibit fronts with complicated interfacial structure separating phase-locked homogeneous states. For values of the forcing amplitude below a critical value the front "explodes" and the width of the interfacial zone grows without bound. Such front explosion phenomena are investigated for a realistic model of catalytic CO oxidation on a Pt(110) surface in the 2:1 and 3:1 resonantly forced regimes. In the 2:1 regime, the fronts are stationary and the front explosion leads to a defect-mediated turbulent state. In the 3:1 resonantly forced system, the fronts propagate. The front velocity tends to zero as the front explosion point is reached and the final asymptotic state is a 2:1 resonantly locked labyrinthine pattern. The front dynamics described here should be observable in experiment since the model has been shown to capture essential features of the CO oxidation reaction.
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Affiliation(s)
- Jörn Davidsen
- Max-Planck-Institut für Physik Komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany.
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Pineda M, Cosenza MG. Synchronization in driven versus autonomous coupled chaotic maps. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 71:057201. [PMID: 16089699 DOI: 10.1103/physreve.71.057201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2004] [Revised: 12/02/2004] [Indexed: 05/03/2023]
Abstract
The phenomenon of synchronization occurring in a locally coupled map lattice subject to an external drive is compared to the synchronization process in an autonomous coupled map system with similar local couplings plus a global interaction. It is shown that chaotic synchronized states in both systems are equivalent, but the collective states arising after the chaotic synchronized state becomes unstable can be different in these two systems. It is found that the external drive induces chaotic synchronization as well as synchronization of unstable periodic orbits of the local dynamics in the driven lattice. On the other hand, the addition of a global interaction in the autonomous system allows for chaotic synchronization which is not possible in a large coupled map system possessing only local couplings.
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Affiliation(s)
- M Pineda
- Max-Planck-Institut für Physik Komplexer Systeme, Nöthnizer Strasse 38, 01187 Dresden, Germany
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23
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Peter R, Hilt M, Ziebert F, Bammert J, Erlenkämper C, Lorscheid N, Weitenberg C, Winter A, Hammele M, Zimmermann W. Stripe-hexagon competition in forced pattern-forming systems with broken up-down symmetry. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 71:046212. [PMID: 15903775 DOI: 10.1103/physreve.71.046212] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2004] [Indexed: 05/02/2023]
Abstract
We investigate the response of two-dimensional pattern-forming systems with a broken up-down symmetry, such as chemical reactions, to spatially resonant forcing and propose related experiments. The nonlinear behavior immediately above threshold is analyzed in terms of amplitude equations suggested for a 1:2 and 1:1 ratio between the wavelength of the spatial periodic forcing and the wavelength of the pattern of the respective system. Both sets of coupled amplitude equations are derived by a perturbative method from the Lengyel-Epstein model describing a chemical reaction showing Turing patterns, which gives us the opportunity to relate the generic response scenarios to a specific pattern-forming system. The nonlinear competition between stripe patterns and distorted hexagons is explored and their range of existence, stability, and coexistence is determined. Whereas without modulations hexagonal patterns are always preferred near onset of pattern formation, single-mode solutions (stripes) are favored close to threshold for modulation amplitudes beyond some critical value. Hence distorted hexagons only occur in a finite range of the control parameter and their interval of existence shrinks to zero with increasing values of the modulation amplitude. Furthermore, depending on the modulation amplitude, the transition between stripes and distorted hexagons is either subcritical or supercritical.
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Affiliation(s)
- R Peter
- Theoretische Physik, Universität des Saarlandes, D-66041 Saarbrücken, Germany
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24
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Engineering gene networks to emulate Drosophila embryonic pattern formation. PLoS Biol 2005; 3:e64. [PMID: 15736977 PMCID: PMC1044831 DOI: 10.1371/journal.pbio.0030064] [Citation(s) in RCA: 109] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2004] [Accepted: 12/15/2004] [Indexed: 11/19/2022] Open
Abstract
Pattern formation is essential in the development of higher eukaryotes. For example, in the Drosophila embryo, maternal morphogen gradients establish gap gene expression domain patterning along the anterior-posterior axis, through linkage with an elaborate gene network. To understand the evolution and behaviour of such systems better, it is important to establish the minimal determinants required for patterning. We have therefore engineered artificial transcription-translation networks that generate simple patterns, crudely analogous to the Drosophila gap gene system. The Drosophila syncytium was modelled using DNA-coated paramagnetic beads fixed by magnets in an artificial chamber, forming a gene expression network. Transient expression domain patterns were generated using various levels of network connectivity. Generally, adding more transcription repression interactions increased the “sharpness” of the pattern while reducing overall expression levels. An accompanying computer model for our system allowed us to search for parameter sets compatible with patterning. While it is clear that the Drosophila embryo is far more complex than our simplified model, several features of interest emerge. For example, the model suggests that simple diffusion may be too rapid for Drosophila-scale patterning, implying that sublocalisation, or “trapping,” is required. Second, we find that for pattern formation to occur under the conditions of our in vitro reaction-diffusion system, the activator molecules must propagate faster than the inhibitors. Third, adding controlled protease degradation to the system stabilizes pattern formation over time. We have reconstituted transcriptional pattern formation from purified substances, including phage RNA polymerases, ribonucleotides, and an eukaryotic translation extract. We anticipate that the system described here will be generally applicable to the study of any biological network with a spatial component. To understand how patterns are established during early development, these authors have created an artificial system to mimic aspects of the early Drosophila embryo
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Marts B, Martinez K, Lin AL. Front dynamics in an oscillatory bistable Belousov-Zhabotinsky chemical reaction. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 70:056223. [PMID: 15600744 DOI: 10.1103/physreve.70.056223] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2004] [Indexed: 05/24/2023]
Abstract
We observe breathing front dynamics which select three distinct types of bistable patterns in the 2:1 resonance regime of the periodically forced oscillatory Belousov-Zhabotinsky reaction. We measure the curvature-driven shrinking of a circular domain R approximately t(1/2) at forcing frequencies below a specific value, and show that the fast time scale front oscillations (breathing) drive this slow time scale shrinking. Above a specific frequency, we observe fronts of higher curvature grow instead of shrink and labyrinth patterns form. Just below the transition frequency is a relatively narrow range of frequencies where the curvature-driven coarsening is balanced by a competing front interaction, which leads to a pattern of localized structures. The length scale of the localized structure and labyrinth patterns is set by the front interactions.
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Affiliation(s)
- Bradley Marts
- Center for Nonlinear and Complex Systems and Department of Physics, Duke University, Durham, North Carolina 27708, USA
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26
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John T, Stannarius R. Preparation of subharmonic patterns in nematic electroconvection. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 70:025202. [PMID: 15447535 DOI: 10.1103/physreve.70.025202] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2004] [Indexed: 05/24/2023]
Abstract
Nematic electroconvection is studied under asymmetric periodic excitation with a driving electric field E(t)=E(t+T) not equal -E(t+T/2). A new dynamic regime, distinguished by subharmonic dynamics, is discovered in the pattern state diagram between conventional conductive and dielectric regimes. The spatial and temporal pattern characteristics are investigated experimentally. The dynamics, threshold fields, and selected pattern wavelengths at onset, calculated from a Floquet analysis of the linearized electrohydrodynamic equations with a test mode ansatz, are in good agreement with experimental results.
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Affiliation(s)
- Thomas John
- Fakultät für Naturwissenschaften, Institut für Experimentelle Physik I, Universität Magdeburg, Universitätsplatz 2,D-39106 Magdeburg, Germany
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27
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Lin AL, Hagberg A, Meron E, Swinney HL. Resonance tongues and patterns in periodically forced reaction-diffusion systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:066217. [PMID: 15244718 DOI: 10.1103/physreve.69.066217] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2003] [Indexed: 05/14/2023]
Abstract
Various resonant and near-resonant patterns form in a light-sensitive Belousov-Zhabotinsky (BZ) reaction in response to a spatially homogeneous time-periodic perturbation with light. The regions (tongues) in the forcing frequency and forcing amplitude parameter plane where resonant patterns form are identified through analysis of the temporal response of the patterns. Resonant and near-resonant responses are distinguished. The unforced BZ reaction shows both spatially uniform oscillations and rotating spiral waves, while the forced system shows patterns such as standing-wave labyrinths and rotating spiral waves. The patterns depend on the amplitude and frequency of the perturbation, and also on whether the system responds to the forcing near the uniform oscillation frequency or the spiral wave frequency. Numerical simulations of a forced FitzHugh-Nagumo reaction-diffusion model show both resonant and near-resonant patterns similar to the BZ chemical system.
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Affiliation(s)
- Anna L Lin
- Center for Nonlinear and Complex Systems and Department of Physics, Duke University, Durham, North Carolina 27708, USA
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28
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Zhou C, Kurths J. Resonant patterns in noisy active media. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:056210. [PMID: 15244907 DOI: 10.1103/physreve.69.056210] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2003] [Revised: 03/11/2004] [Indexed: 05/24/2023]
Abstract
We investigate noise-controlled resonant response of active media to weak periodic forcing, both in excitable and oscillatory regimes. In the excitable regime, we find that noise-induced irregular wave structures can be reorganized into frequency-locked resonant patterns by weak signals with suitable frequencies. The resonance occurs due to a matching condition between the signal frequency and the noise-induced inherent time scale of the media. m:1 resonant regions similar to the Arnold tongues in frequency locking of self-sustained oscillatory media are observed. In the self-sustained oscillatory regime, noise also controls the oscillation frequency and reshapes significantly the Arnold tongues. The combination of noise and weak signal thus could provide an efficient tool to manipulate active extended systems in experiments.
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Affiliation(s)
- Changsong Zhou
- Institute of Physics, University of Potsdam, PF 601553, 14415 Potsdam, Germany
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29
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Etchegoin P. Self-tunnelling oscillations in non-linear quantum mechanics and the electron-transfer problem. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2003.10.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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30
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Hemming CJ, Kapral R. Front explosions in three-dimensional resonantly-forced oscillatory systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003; 68:026203. [PMID: 14525080 DOI: 10.1103/physreve.68.026203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2003] [Indexed: 11/07/2022]
Abstract
Interface dynamics in a three-dimensional coupled map lattice with a period-3 local map is studied. The system possesses a parameter regime where one typically finds three-phase patterns consisting of spatially uniform domains which follow the period-3 cycle and oscillate among the three different phases. The interfaces where these domains meet may exhibit complex irregular dynamics. The system also has a parameter regime of "turbulent" dynamics, which is a chaotic transient with a superexponentially long lifetime. The transition from the three-phase pattern regime to the turbulent regime is studied. As a control parameter is tuned, the interfaces between domains develop turbulent structure. The thickness of the turbulent zone remains finite up to a critical parameter value after which it is infinite. We characterize this "front explosion" transition in three-dimensional systems and compare it with the analogous transition in two-dimensional systems where the critical properties are markedly different. The front explosion in the three-dimensional resonantly-forced complex Ginzburg-Landau equation is also investigated briefly and its character differs from that in the three-dimensional coupled map lattice.
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Affiliation(s)
- Christopher J Hemming
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario, Canada M5S 3H6
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31
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Hildebrand M, Cui J, Mihaliuk E, Wang J, Showalter K. Synchronization of spatiotemporal patterns in locally coupled excitable media. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003; 68:026205. [PMID: 14525082 DOI: 10.1103/physreve.68.026205] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2003] [Indexed: 05/24/2023]
Abstract
The synchronization of two distributed Belousov-Zhabotinsky systems is experimentally and theoretically investigated. Symmetric local coupling of the systems is made possible with the use of a video camera-projector scheme. The spatial disorder of the coupled systems, with random initial configurations of spirals, gradually decreases until a final state is attained, which corresponds to a synchronized state with a single spiral in each system. The experimental observations are confirmed with numerical simulations of two identical Oregonator models with symmetric local coupling, and a systematic study reveals generalized synchronization of spiral waves. Several different types of synchronization attractors are distinguished.
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Affiliation(s)
- Michael Hildebrand
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
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32
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Bertram M, Beta C, Rotermund HH, Ertl G. Complex Patterns in a Periodically Forced Surface Reaction. J Phys Chem B 2003. [DOI: 10.1021/jp0341927] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthias Bertram
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Carsten Beta
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Harm H. Rotermund
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Gerhard Ertl
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
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33
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Woo SJ, Lee J, Lee KJ. Spiral waves in a coupled network of sine-circle maps. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003; 68:016208. [PMID: 12935226 DOI: 10.1103/physreve.68.016208] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2002] [Revised: 03/11/2003] [Indexed: 05/24/2023]
Abstract
A coupled two-dimensional lattice of sine-circle maps is investigated numerically as a simple model for coupled network of nonlinear oscillators under a spatially uniform, temporally periodic, external forcing. Various patterns, including quasiperiodic spiral waves, periodic, banded spiral waves in several different polygonal shapes, and domain patterns, are observed. The banded spiral waves and domain patterns match well with the results of earlier experimental studies. Several transitions are analyzed. Among others, the source-sink transition of a quasiperiodic spiral wave and the cascade of "side-doubling" bifurcations of polygonal spiral waves are of great interest.
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Affiliation(s)
- Sung-Jae Woo
- National Creative Research Initiative Center for Neuro-dynamics and Department of Physics, Korea University, Seoul 136-701, Korea
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34
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Cosenza MG, Pineda M, Parravano A. Emergence of patterns in driven and in autonomous spatiotemporal systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003; 67:066217. [PMID: 16241336 DOI: 10.1103/physreve.67.066217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2002] [Indexed: 05/04/2023]
Abstract
The relationship between a driven extended system and an autonomous spatiotemporal system is investigated in the context of coupled map lattice models. Specifically, a locally coupled map lattice subjected to an external drive is compared to a coupled map system with similar local couplings plus a global interaction. It is shown that, under some conditions, the emergent patterns in both systems are analogous. Based on the knowledge of the dynamical responses of the driven lattice, we present a method that allows the prediction of parameter values for the emergence of ordered spatiotemporal patterns in a class of coupled map systems having local coupling and general forms of global interactions.
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Affiliation(s)
- M G Cosenza
- Centro de Astrofísica Teórica, Facultad de Ciencias Universidad de Los Andes, Mérida, Apartado Postal 26, Mérida 5251, Venezuela
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35
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Rüdiger S, Míguez DG, Muñuzuri AP, Sagués F, Casademunt J. Dynamics of Turing patterns under spatiotemporal forcing. PHYSICAL REVIEW LETTERS 2003; 90:128301. [PMID: 12688908 DOI: 10.1103/physrevlett.90.128301] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2002] [Indexed: 05/24/2023]
Abstract
We study, both theoretically and experimentally, the dynamical response of Turing patterns to a spatiotemporal forcing in the form of a traveling-wave modulation of a control parameter. We show that from strictly spatial resonance, it is possible to induce new, generic dynamical behaviors, including temporally modulated traveling waves and localized traveling solitonlike solutions. The latter make contact with the soliton solutions of Coullet [Phys. Rev. Lett. 56, 724 (1986)]] and generalize them. The stability diagram for the different propagating modes in the Lengyel-Epstein model is determined numerically. Direct observations of the predicted solutions in experiments carried out with light modulations in the photosensitive chlorine dioxide-iodine-malonic acid reaction are also reported.
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Affiliation(s)
- S Rüdiger
- Departament E.C.M., Facultat de Física, Universitat de Barcelona, Avinguda Diagonal 647, 08028 Barcelona, Spain
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36
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Buceta J, Lindenberg K, Parrondo JMR. Pattern formation induced by nonequilibrium global alternation of dynamics. PHYSICAL REVIEW E 2002; 66:036216. [PMID: 12366233 DOI: 10.1103/physreve.66.036216] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2002] [Indexed: 11/07/2022]
Abstract
We recently proposed a mechanism for pattern formation based on the alternation of two dynamics, neither of which exhibits patterns. Here we analyze the mechanism in detail, showing by means of numerical simulations and theoretical calculations how the nonequilibrium process of switching between dynamics, either randomly or periodically, may induce both stationary and oscillatory spatial structures. Our theoretical analysis by means of mode amplitude equations shows that all features of the model can be understood in terms of the nonlinear interactions of a small number of Fourier modes.
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Affiliation(s)
- J Buceta
- Department of Chemistry and Biochemistry and Institute for Nonlinear Science, University of California, San Diego, 9500 Gilman Drive, La Jolla 92093-0340, USA
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37
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Sakurai T, Mihaliuk E, Chirila F, Showalter K. Design and control of wave propagation patterns in excitable media. Science 2002; 296:2009-12. [PMID: 11988535 DOI: 10.1126/science.1071265] [Citation(s) in RCA: 175] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Intricate patterns of wave propagation are exhibited in a chemical reaction-diffusion system with spatiotemporal feedback. Wave behavior is controlled by feedback-regulated excitability gradients that guide propagation in specified directions. Waves interacting with boundaries and with other waves are observed when interaction terms are incorporated into the control algorithm. Spatiotemporal feedback offers wide flexibility for designing and controlling wave behavior in excitable media.
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Affiliation(s)
- Tatsunari Sakurai
- Department of Chemistry, West Virginia University, Morgantown, WV 26506, USA
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38
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Kim J, Lee J, Kahng B. Harmonic forcing of an extended oscillatory system: homogeneous and periodic solutions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2002; 65:046208. [PMID: 12005977 DOI: 10.1103/physreve.65.046208] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2001] [Indexed: 05/23/2023]
Abstract
In this paper we study the effect of external harmonic forcing on a one-dimensional oscillatory system described by the complex Ginzburg-Landau equation (CGLE). For a sufficiently large forcing amplitude, a homogeneous state with no spatial structure is observed. The state becomes unstable to a spatially periodic "stripe" state via a supercritical bifurcation as the forcing amplitude decreases. An approximate phase equation is derived, and an analytic solution for the stripe state is obtained, through which the asymmetric behavior of the stability border of the state is explained. The phase equation, in particular the analytic solution, is found to be very useful in understanding the stability borders of the homogeneous and stripe states of the forced CGLE.
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Affiliation(s)
- Jeenu Kim
- School of Physics and Center for Theoretical Physics, Seoul National University, Seoul 151-742, Korea
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39
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Kiss IZ, Wang W, Hudson JL. Populations of coupled electrochemical oscillators. CHAOS (WOODBURY, N.Y.) 2002; 12:252-263. [PMID: 12779552 DOI: 10.1063/1.1426382] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Experiments were carried out on arrays of chaotic electrochemical oscillators to which global coupling, periodic forcing, and feedback were applied. The global coupling converts a very weakly coupled set of chaotic oscillators to a synchronized state with sufficiently large values of coupling strength; at intermediate values both intermittent and stable chaotic cluster states occur. Cluster formation and synchronization were also obtained by applying feedback and forcing to a moderately coupled base state. The three cases differ, however, in other details. The feedback and forcing also produce periodic cluster states and more than two clusters. Configurations of two (chaotic) clusters and two, three, or four (periodic) clusters were observed. (c) 2002 American Institute of Physics.
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Affiliation(s)
- Istvan Z. Kiss
- Department of Chemical Engineering, 102 Engineers' Way, University of Virginia, Charlottesville, Virginia 22904-4741
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40
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Hildebrand M, Skødt H, Showalter K. Spatial symmetry breaking in the Belousov-Zhabotinsky reaction with light-induced remote communication. PHYSICAL REVIEW LETTERS 2001; 87:088303. [PMID: 11497989 DOI: 10.1103/physrevlett.87.088303] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2000] [Revised: 05/02/2001] [Indexed: 05/23/2023]
Abstract
Domains containing spiral waves form on a stationary background in a photosensitive Belousov-Zhabotinsky reaction with light-induced alternating nonlocal feedback. Complex behavior of colliding and splitting wave fragments is found with feedback radii comparable to the spiral wavelength. A linear stability analysis of the uniform stationary states in an Oregonator model reveals a spatial symmetry breaking instability. Numerical simulations show behavior in agreement with that found experimentally and also predict a variety of other new patterns.
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Affiliation(s)
- M Hildebrand
- Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
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41
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Longhi S. Spiral waves in a class of optical parametric oscillators. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2001; 63:055202. [PMID: 11414951 DOI: 10.1103/physreve.63.055202] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2000] [Indexed: 05/23/2023]
Abstract
The formation of three-armed rotating spiral waves is shown to occur in a spatially extended nonlinear optical system with broken phase invariance. These new spatial structures are found in the mean-field model of a class of optical parametric oscillators (3omega-->2omega+omega) in which the multistep process 2omega=omega+omega breaks the phase invariance of the down-conversion process. A parametrically-forced Ginzburg-Landau equation is derived to explain the existence of phase-armed spiral waves.
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Affiliation(s)
- S Longhi
- Dipartimento di Fisica, Istituto Nazionale di Fisica per la Materia, Politecnico di Milano, I-20133 Milano, Italy
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42
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Park HK. Frequency locking in spatially extended systems. PHYSICAL REVIEW LETTERS 2001; 86:1130-1133. [PMID: 11178027 DOI: 10.1103/physrevlett.86.1130] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2000] [Revised: 10/06/2000] [Indexed: 05/23/2023]
Abstract
A variant of the complex Ginzburg-Landau equation is used to investigate the frequency-locking phenomena in spatially extended systems. With appropriate parameter values, a variety of frequency-locked patterns including flats, pi fronts, labyrinths, and 2pi/3 fronts emerge. We show that in spatially extended systems, frequency locking can be enhanced or suppressed by diffusive coupling. Novel patterns such as chaotically bursting domains and target patterns are also observed during the transition to locking.
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Affiliation(s)
- H K Park
- Department of Physics, Korea Advanced Institute of Science and Technology, Taejon 305-701, Korea
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