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For: Holste D, Grosse I, Herzel H. Statistical analysis of the DNA sequence of human chromosome 22. Phys Rev E Stat Nonlin Soft Matter Phys 2001;64:041917. [PMID: 11690062 DOI: 10.1103/physreve.64.041917] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2001] [Indexed: 11/07/2022]
Number Cited by Other Article(s)
1
Bonnici V, Manca V. Informational laws of genome structures. Sci Rep 2016;6:28840. [PMID: 27354155 PMCID: PMC4937431 DOI: 10.1038/srep28840] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Accepted: 06/09/2016] [Indexed: 01/06/2023]  Open
2
Zhao Y, Duan S, Zhang W. (De)localization and the mobility edges in a disordered double chain with long-range intrachain correlation and short-range interchain correlation. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2012;24:245502. [PMID: 22609638 DOI: 10.1088/0953-8984/24/24/245502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
3
Wright CF, Morelli MJ, Thébaud G, Knowles NJ, Herzyk P, Paton DJ, Haydon DT, King DP. Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing. J Virol 2011;85:2266-75. [PMID: 21159860 PMCID: PMC3067773 DOI: 10.1128/jvi.01396-10] [Citation(s) in RCA: 111] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2010] [Accepted: 11/29/2010] [Indexed: 01/03/2023]  Open
4
Macia E. Charge transfer in DNA: effective Hamiltonian approaches. Z KRIST-CRYST MATER 2009. [DOI: 10.1524/zkri.2009.1123] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
5
Marqués MI. Monte Carlo study of the competition between long-range and short-range correlated disorder in a second-order phase transition. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009;79:052103. [PMID: 19518500 DOI: 10.1103/physreve.79.052103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2009] [Indexed: 05/27/2023]
6
Guo AM, Xiong SJ. Violation of the single-parameter scaling hypothesis in human chromosome 22 with charge transfer models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009;79:041924. [PMID: 19518273 DOI: 10.1103/physreve.79.041924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2008] [Revised: 12/15/2008] [Indexed: 05/27/2023]
7
Paar V, Pavin N, Basar I, Rosandić M, Gluncić M, Paar N. Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats. BMC Bioinformatics 2008;9:466. [PMID: 18980673 PMCID: PMC2661002 DOI: 10.1186/1471-2105-9-466] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2008] [Accepted: 11/03/2008] [Indexed: 11/28/2022]  Open
8
Liu Z, Venkatesh SS, Maley CC. Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples. BMC Genomics 2008;9:509. [PMID: 18973670 PMCID: PMC2628393 DOI: 10.1186/1471-2164-9-509] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2008] [Accepted: 10/30/2008] [Indexed: 12/17/2022]  Open
9
Perera A, Vallverdu M, Claria F, Soria JM, Caminal P. DNA binding site characterization by means of Rényi entropy measures on nucleotide transitions. IEEE Trans Nanobioscience 2008;7:133-41. [PMID: 18556261 DOI: 10.1109/tnb.2008.2000744] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
10
Perera A, Vallverdu M, Claria F, Soria JM, Caminal P. DNA binding sites characterization by means of Rényi entropy measures on nucleotide transitions. CONFERENCE PROCEEDINGS : ... ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL CONFERENCE 2008;2006:5783-6. [PMID: 17946719 DOI: 10.1109/iembs.2006.260482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
11
Vinga S, Almeida JS. Local Renyi entropic profiles of DNA sequences. BMC Bioinformatics 2007;8:393. [PMID: 17939871 PMCID: PMC2238722 DOI: 10.1186/1471-2105-8-393] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2007] [Accepted: 10/16/2007] [Indexed: 11/18/2022]  Open
12
Lillo F, Spanò M. Inverted and mirror repeats in model nucleotide sequences. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007;76:041914. [PMID: 17995033 DOI: 10.1103/physreve.76.041914] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2007] [Indexed: 05/25/2023]
13
Guo AM. Long-range correlation and charge transfer efficiency in substitutional sequences of DNA molecules. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007;75:061915. [PMID: 17677308 DOI: 10.1103/physreve.75.061915] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2007] [Revised: 04/15/2007] [Indexed: 05/16/2023]
14
On tests of independence based on minimum -divergence estimator with constraints: An application to modeling DNA. Comput Stat Data Anal 2006. [DOI: 10.1016/j.csda.2005.11.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
15
Caetano RA, Schulz PA. Sequencing-independent delocalization in a DNA-like double chain with base pairing. PHYSICAL REVIEW LETTERS 2005;95:126601. [PMID: 16197093 DOI: 10.1103/physrevlett.95.126601] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2004] [Indexed: 05/04/2023]
16
Li W, Holste D. Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005;71:041910. [PMID: 15903704 DOI: 10.1103/physreve.71.041910] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2004] [Revised: 10/28/2004] [Indexed: 05/02/2023]
17
Borstnik B, Pumpernik D. Evidence on DNA slippage step-length distribution. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005;71:031913. [PMID: 15903465 DOI: 10.1103/physreve.71.031913] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2004] [Revised: 11/30/2004] [Indexed: 05/02/2023]
18
Burroughs NJ, de Boer RJ, Keşmir C. Discriminating self from nonself with short peptides from large proteomes. Immunogenetics 2004;56:311-20. [PMID: 15322777 DOI: 10.1007/s00251-004-0691-0] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2004] [Revised: 05/26/2004] [Indexed: 10/26/2022]
19
Holste D, Grosse I, Beirer S, Schieg P, Herzel H. Repeats and correlations in human DNA sequences. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003;67:061913. [PMID: 16241267 DOI: 10.1103/physreve.67.061913] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2003] [Indexed: 05/04/2023]
20
Som A, Sahoo S, Mukhopadhyay I, Chakrabarti J, Chaudhury R. Scaling violations in coding DNA. EUROPHYSICS LETTERS (EPL) 2003;62:271-277. [DOI: 10.1209/epl/i2003-00341-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
21
Bernaola-Galván P, Carpena P, Román-Roldán R, Oliver JL. Study of statistical correlations in DNA sequences. Gene 2002;300:105-15. [PMID: 12468092 DOI: 10.1016/s0378-1119(02)01037-5] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
22
Pöschel T, Freund JA. Finite-sample frequency distributions originating from an equiprobability distribution. ACTA ACUST UNITED AC 2002;66:026103. [PMID: 12241233 DOI: 10.1103/physreve.66.026103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2001] [Indexed: 11/07/2022]
23
Carpena P, Bernaola-Galván P, Ivanov PC, Stanley HE. Metal-insulator transition in chains with correlated disorder. Nature 2002;418:955-9. [PMID: 12198542 DOI: 10.1038/nature00948] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Azad RK, Bernaola-Galván P, Ramaswamy R, Rao JS. Segmentation of genomic DNA through entropic divergence: power laws and scaling. PHYSICAL REVIEW E 2002;65:051909. [PMID: 12059595 DOI: 10.1103/physreve.65.051909] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2001] [Revised: 01/22/2002] [Indexed: 11/07/2022]
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