Two-dimensional model of a reaction-diffusion system as a typewriter

Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction

Memory is an essential element in information processing devices. We investigated a network formed by just three interacting nodes representing continuously stirred tank reactors (CSTRs) in which the glycolytic reaction proceeds as a potential realization of a chemical memory unit. Our study is based on the 2-variable computational model of the reaction. The model parameters were selected such that the system has a stable limit cycle and several distinct, discrete Turing patterns characterized by stationary concentrations at the nodes. In our interpretation, oscillations represent a blank memory unit, and Turing patterns code information. The considered memory can preserve information on one of six different symbols. The time evolution of the nodes was individually controlled by the inflow of ATP. We demonstrate that information can be written with a simple and short perturbation of the inflow. The perturbation applies to only one or two nodes, and it is symbol specific. The memory can be erased with identical inflow perturbation applied to all nodes. The presented idea of pattern-coded memory applies to other reaction networks that allow for discrete Turing patterns. Moreover, it hints at the experimental realization of memory in a simple system with the glycolytic reaction.

Oscillons localized inside breathing periodical structures in a two-variable model of a one-dimensional infinite excitable reaction-diffusion system

A two-variable model of a one-dimensional (1D), infinite, excitable, reaction-diffusion system describing oscillons localized inside an expanding breathing periodical structure emitting traveling impulses is presented. The model is based on two coupled catalytic (enzymatic) reactions.

Stationary periodical structure emitting an infinite number of traveling impulses in a model of a one-dimensional infinite excitable reaction-diffusion system

A two-variable model of a one-dimensional infinite excitable reaction-diffusion system describing an expanding stationary periodical structure emitting traveling impulses is presented. The model is based on two coupled catalytic (enzymatic) reactions. The chemical scheme consists of mono- and bimolecular reactions.

Periodic spatiotemporal patterns in a two-dimensional two-variable reaction-diffusion model

Periodic spatiotemporal two-dimensional (2D) asymptotic patterns in an excitable two-variable thermochemical (reaction-diffusion) system are shown. In a one-dimensional system the traveling impulse which reflects from impermeable boundaries is a stable asymptotic solution if the diffusion coefficient of the reactant is greater than the thermal diffusivity of the system. Periodic patterns of two symmetries are presented in the 2D system: the impulse of excitation propagating along the diagonal of a square spatial domain and a structure consisting of curved impulses which propagate in the direction perpendicular to one side of a rectangular domain.

Periodical survival or decay of traveling impulse in a model of a one-dimensional reaction-diffusion system

A two-variable model of a one-dimensional (1D), open, excitable reaction-diffusion system describing space-time evolutions of traveling impulses is investigated. It is shown that depending on the size of the system, the traveling impulse can survive or decay. Continuous increase of the size of the system causes periodical repetitions of surviving and decay of the impulse. The qualitative properties of the model, which allow us to expect the phenomenon, are described. Numerical solutions confirm this expectation. The chemical reaction scheme is realistic and may be a stimulus for seeking the phenomenon in experiments.