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Weyer H, Brauns F, Frey E. Coarsening and wavelength selection far from equilibrium: A unifying framework based on singular perturbation theory. Phys Rev E 2023; 108:064202. [PMID: 38243507 DOI: 10.1103/physreve.108.064202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 08/29/2023] [Indexed: 01/21/2024]
Abstract
Intracellular protein patterns are described by (nearly) mass-conserving reaction-diffusion systems. While these patterns initially form out of a homogeneous steady state due to the well-understood Turing instability, no general theory exists for the dynamics of fully nonlinear patterns. We develop a unifying theory for nonlinear wavelength-selection dynamics in (nearly) mass-conserving two-component reaction-diffusion systems independent of the specific mathematical model chosen. Previous work has shown that these systems support an extremely broad band of stable wavelengths, but the mechanism by which a specific wavelength is selected has remained unclear. We show that an interrupted coarsening process selects the wavelength at the threshold to stability. Based on the physical intuition that coarsening is driven by competition for mass and interrupted by weak source terms that break strict mass conservation, we develop a singular perturbation theory for the stability of stationary patterns. The resulting closed-form analytical expressions enable us to quantitatively predict the coarsening dynamics and the final pattern wavelength. We find excellent agreement with numerical results throughout the diffusion- and reaction-limited regimes of the dynamics, including the crossover region. Further, we show how, in these limits, the two-component reaction-diffusion systems map to generalized Cahn-Hilliard and conserved Allen-Cahn dynamics, therefore providing a link to these two fundamental scalar field theories. The systematic understanding of the length-scale dynamics of fully nonlinear patterns in two-component systems provided here builds the basis to reveal the mechanisms underlying wavelength selection in multicomponent systems with potentially several conservation laws.
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Affiliation(s)
- Henrik Weyer
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
| | - Fridtjof Brauns
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
- Max Planck School Matter to Life, Hofgartenstraße 8, D-80539 Munich, Germany
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Frohoff-Hülsmann T, Wrembel J, Thiele U. Suppression of coarsening and emergence of oscillatory behavior in a Cahn-Hilliard model with nonvariational coupling. Phys Rev E 2021; 103:042602. [PMID: 34006003 DOI: 10.1103/physreve.103.042602] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 03/04/2021] [Indexed: 12/27/2022]
Abstract
We investigate a generic two-field Cahn-Hilliard model with variational and nonvariational coupling. It describes, for instance, passive and active ternary mixtures, respectively. Already a linear stability analysis of the homogeneous mixed state shows that activity not only allows for the usual large-scale stationary (Cahn-Hilliard) instability of the well-known passive case but also for small-scale stationary (Turing) and large-scale oscillatory (Hopf) instabilities. In consequence of the Turing instability, activity may completely suppress the usual coarsening dynamics. In a fully nonlinear analysis, we first briefly discuss the passive case before focusing on the active case. Bifurcation diagrams and selected direct time simulations are presented that allow us to establish that nonvariational coupling (i) can partially or completely suppress coarsening and (ii) may lead to the emergence of drifting and oscillatory states. Throughout, we emphasize the relevance of conservation laws and related symmetries for the encountered intricate bifurcation behavior.
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Affiliation(s)
- Tobias Frohoff-Hülsmann
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany
| | - Jana Wrembel
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 9, 48149 Münster, Germany.,Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstr. 2, 48149 Münster, Germany.,Center for Multiscale Theory and Computation (CMTC), Westfälische Wilhelms-Universität, Corrensstr. 40, 48149 Münster, Germany
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Zambra V, Clerc MG, Barboza R, Bortolozzo U, Residori S. Umbilical defect dynamics in an inhomogeneous nematic liquid crystal layer. Phys Rev E 2020; 101:062704. [PMID: 32688617 DOI: 10.1103/physreve.101.062704] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 05/22/2020] [Indexed: 11/07/2022]
Abstract
Electrically driven nematic liquid crystals layers are ideal contexts for studying the interactions of local topological defects, umbilical defects. In homogeneous samples the number of defects is expected to decrease inversely proportional to time as a result of defect-pair interaction law, so-called coarsening process. Experimentally, we characterize the coarsening dynamics in samples containing glass beads as spacers and show that the inclusion of such imperfections changes the exponent of the coarsening law. Moreover, we demonstrate that beads that are slightly deformed alter the surrounding molecular distribution and attract vortices of both topological charges, thus, presenting a mainly quadrupolar behavior. Theoretically, based on a model of vortices diluted in a dipolar medium, a 2/3 exponent is inferred, which is consistent with the experimental observations.
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Affiliation(s)
- Valeska Zambra
- Departamento de Física and Millennium Institute for Research in Optics, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - Marcel G Clerc
- Departamento de Física and Millennium Institute for Research in Optics, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - Raouf Barboza
- Departamento de Física and Millennium Institute for Research in Optics, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile.,Dipartimento di Fisica, Università di Napoli Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, 80126 Napoli, Italy
| | | | - Stefania Residori
- HOASYS, 1047 route des Dolines, 06560 Valbonne, France.,Institut de Physique de Nice, UMR7010, Université de Nice-Sophia Antipolis, CNRS, 1361 Route des Lucioles, 06560 Valbonne, France
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Phase separation driven by density-dependent movement: A novel mechanism for ecological patterns. Phys Life Rev 2016; 19:107-121. [PMID: 27478087 DOI: 10.1016/j.plrev.2016.07.009] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Revised: 06/30/2016] [Accepted: 07/08/2016] [Indexed: 11/21/2022]
Abstract
Many ecosystems develop strikingly regular spatial patterns because of small-scale interactions between organisms, a process generally referred to as spatial self-organization. Self-organized spatial patterns are important determinants of the functioning of ecosystems, promoting the growth and survival of the involved organisms, and affecting the capacity of the organisms to cope with changing environmental conditions. The predominant explanation for self-organized pattern formation is spatial heterogeneity in establishment, growth and mortality, resulting from the self-organization processes. A number of recent studies, however, have revealed that movement of organisms can be an important driving process creating extensive spatial patterning in many ecosystems. Here, we review studies that detail movement-based pattern formation in contrasting ecological settings. Our review highlights that a common principle, where movement of organisms is density-dependent, explains observed spatial regular patterns in all of these studies. This principle, well known to physics as the Cahn-Hilliard principle of phase separation, has so-far remained unrecognized as a general mechanism for self-organized complexity in ecology. Using the examples presented in this paper, we explain how this movement principle can be discerned in ecological settings, and clarify how to test this mechanism experimentally. Our study highlights that animal movement, both in isolation and in unison with other processes, is an important mechanism for regular pattern formation in ecosystems.
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1D Cahn–Hilliard Dynamics: Coarsening and Interrupted Coarsening. DISCONTINUITY AND COMPLEXITY IN NONLINEAR PHYSICAL SYSTEMS 2014. [DOI: 10.1007/978-3-319-01411-1_9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Gelens L, Knobloch E. Faceting and coarsening dynamics in the complex Swift-Hohenberg equation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:046221. [PMID: 19905429 DOI: 10.1103/physreve.80.046221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2009] [Indexed: 05/28/2023]
Abstract
The complex Swift-Hohenberg equation models pattern formation arising from an oscillatory instability with a finite wave number at onset and finds applications in lasers, optical parametric oscillators, and photorefractive oscillators. We show that with real coefficients this equation exhibits two classes of localized states: localized in amplitude only or localized in both amplitude and phase. The latter are associated with phase-winding states in which the real and imaginary parts of the order parameter oscillate periodically but with a constant phase difference between them. The localized states take the form of defects connecting phase-winding states with equal and opposite phase lag, and can be stable over a wide range of parameters. The formation of these defects leads to faceting of states with initially spatially uniform phase. Depending on parameters these facets may either coarsen indefinitely, as described by a Cahn-Hilliard equation, or the coarsening ceases leading to a frozen faceted structure.
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Affiliation(s)
- Lendert Gelens
- Department of Applied Physics and Photonics, Vrije Universiteit Brussel, Brussel, Belgium.
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Holm DD, O Náraigh L, Tronci C. Emergent singular solutions of nonlocal density-magnetization equations in one dimension. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:036211. [PMID: 18517489 DOI: 10.1103/physreve.77.036211] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2007] [Revised: 02/05/2008] [Indexed: 05/26/2023]
Abstract
We investigate the emergence of singular solutions in a nonlocal model for a magnetic system. We study a modified Gilbert-type equation for the magnetization vector and find that the evolution depends strongly on the length scales of the nonlocal effects. We pass to a coupled density-magnetization model and perform a linear stability analysis, noting the effect of the length scales of nonlocality on the system's stability properties. We carry out numerical simulations of the coupled system and find that singular solutions emerge from smooth initial data. The singular solutions represent a collection of interacting particles (clumpons). By restricting ourselves to the two-clumpon case, we are reduced to a two-dimensional dynamical system that is readily analyzed, and thus we classify the different clumpon interactions possible.
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Affiliation(s)
- Darryl D Holm
- Department of Mathematics, Imperial College London, London, UK
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Clerc MG, Tirapegui E, Trejo M. Pattern formation and localized structures in reaction-diffusion systems with non-Fickian transport. PHYSICAL REVIEW LETTERS 2006; 97:176102. [PMID: 17155485 DOI: 10.1103/physrevlett.97.176102] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2005] [Indexed: 05/12/2023]
Abstract
We study the robust dynamical behaviors of reaction-diffusion systems where the transport gives rise to non-Fickian diffusion. A prototype model describing the deposition of molecules in a surface is used to show the generic appearance of Turing structures which can coexist with homogeneous states giving rise to localized structures through the pinning mechanism. The characteristic lengths of these structures are in the nanometer region in agreement with recent experimental observations.
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Affiliation(s)
- M G Clerc
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
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Lerouge S, Argentina M, Decruppe JP. Interface instability in shear-banding flow. PHYSICAL REVIEW LETTERS 2006; 96:088301. [PMID: 16606230 DOI: 10.1103/physrevlett.96.088301] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2005] [Indexed: 05/08/2023]
Abstract
We report on the spatiotemporal dynamics of the interface in shear-banding flow of a wormlike micellar system (cetyltrimethylammonium bromide and sodium nitrate in water) during a start-up experiment. Using the scattering properties of the induced structures, we demonstrate the existence of an instability of the interface between bands along the vorticity direction. Different regimes of spatiotemporal dynamics of the interface are identified along the stress plateau. We build a model based on the flow symmetry which qualitatively describes the observed patterns.
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Affiliation(s)
- S Lerouge
- Laboratoire Matières et Systèmes Complexes, Université Paris 7, 2 Place Jussieu, 75251 Paris Cédex 05, France.
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