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Tomassoli L, Silva-Dias L, Dolnik M, Epstein IR, Germani R, Gentili PL. Neuromorphic Engineering in Wetware: Discriminating Acoustic Frequencies through Their Effects on Chemical Waves. J Phys Chem B 2024; 128:1241-1255. [PMID: 38285636 DOI: 10.1021/acs.jpcb.3c08429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2024]
Abstract
Some features of the human nervous system can be mimicked not only through software or hardware but also through liquid solutions of chemical systems maintained under out-of-equilibrium conditions. We describe the possibility of exploiting a thin layer of the Belousov-Zhabotinsky (BZ) reaction as a surrogate for the cochlea for sensing acoustic frequencies. Experiments and simulations demonstrate that, as in the human ear where the cochlea transduces the mechanical energy of the acoustic frequencies into the electrochemical energy of neural action potentials and the basilar membrane originates topographic representations of sounds, our bioinspired chemoacoustic system, based on the BZ reaction, gives rise to spatiotemporal patterns as the representation of distinct acoustic bands through transduction of mechanical energy into chemical energy. Acoustic frequencies in the range 10-2000 Hz are partitioned into seven distinct bands based on three attributes of the emerging spatiotemporal patterns: (1) the types and frequencies of the chemical waves, (2) their velocities, and (3) the Faraday waves' wavelengths.
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Affiliation(s)
- Laura Tomassoli
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Leonardo Silva-Dias
- Department of Chemistry, Brandeis University, Waltham, Massachusetts 02454-9110, United States
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo 13.565-905, Brazil
| | - Milos Dolnik
- Department of Chemistry, Brandeis University, Waltham, Massachusetts 02454-9110, United States
| | - Irving R Epstein
- Department of Chemistry, Brandeis University, Waltham, Massachusetts 02454-9110, United States
| | - Raimondo Germani
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Pier Luigi Gentili
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, 06123 Perugia, Italy
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2
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Abstract
In this manuscript, integrals and derivatives of functions on Cantor tartan spaces are defined. The generalisation of standard calculus, which is called F η -calculus, is utilised to obtain definitions of the integral and derivative of functions on Cantor tartan spaces of different dimensions. Differential equations involving the new derivatives are solved. Illustrative examples are presented to check the details.
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Wang J, Tithof J, Nevins TD, Colón RO, Kelley DH. Optimal stretching in the reacting wake of a bluff body. CHAOS (WOODBURY, N.Y.) 2017; 27:123109. [PMID: 29289053 DOI: 10.1063/1.5004649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We experimentally study spreading of the Belousov-Zhabotinsky reaction behind a bluff body in a laminar flow. Locations of reacted regions (i.e., regions with high product concentration) correlate with a moderate range of Lagrangian stretching and that range is close to the range of optimal stretching previously observed in topologically different flows [T. D. Nevins and D. H. Kelley, Phys. Rev. Lett. 117, 164502 (2016)]. The previous work found optimal stretching in a closed, vortex dominated flow, but this article uses an open flow and only a small area of appreciable vorticity. We hypothesize that optimal stretching is common in advection-reaction-diffusion systems with an excitation threshold, including excitable and bistable systems, and that the optimal range depends on reaction chemistry and not on flow shape or characteristic speed. Our results may also give insight into plankton blooms behind islands in ocean currents.
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Affiliation(s)
- Jinge Wang
- Department of Mechanical Engineering, University of Rochester, Rochester, New York 14627, USA
| | - Jeffrey Tithof
- Department of Mechanical Engineering, University of Rochester, Rochester, New York 14627, USA
| | - Thomas D Nevins
- Department of Physics & Astronomy, University of Rochester, Rochester, New York 14627, USA
| | - Rony O Colón
- Department of Mechanical Engineering, University of Rochester, Rochester, New York 14627, USA
| | - Douglas H Kelley
- Department of Mechanical Engineering, University of Rochester, Rochester, New York 14627, USA
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Nevins TD, Kelley DH. Optimal Stretching in Advection-Reaction-Diffusion Systems. PHYSICAL REVIEW LETTERS 2016; 117:164502. [PMID: 27792376 DOI: 10.1103/physrevlett.117.164502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Indexed: 06/06/2023]
Abstract
We investigate growth of the excitable Belousov-Zhabotinsky reaction in chaotic, time-varying flows. In slow flows, reacted regions tend to lie near vortex edges, whereas fast flows restrict reacted regions to vortex cores. We show that reacted regions travel toward vortex centers faster as flow speed increases, but nonreactive scalars do not. For either slow or fast flows, reaction is promoted by the same optimal range of the local advective stretching, but stronger stretching causes reaction blowout and can hinder reaction from spreading. We hypothesize that optimal stretching and blowout occur in many advection-diffusion-reaction systems, perhaps creating ecological niches for phytoplankton in the ocean.
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Affiliation(s)
- Thomas D Nevins
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627, USA
| | - Douglas H Kelley
- Department of Mechanical Engineering, University of Rochester, Rochester, New York 14627, USA
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Ayass MM, Lagzi I, Al-Ghoul M. Targets, ripples and spirals in a precipitation system with anomalous dispersion. Phys Chem Chem Phys 2015; 17:19806-14. [PMID: 26154951 DOI: 10.1039/c5cp01879j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a novel reaction-diffusion system that exhibits three-dimensional superdiffusive traveling waves without utilizing any external forces. These waves include single circular targets, spirals, and ripples as well as phase-like waves. The system is based on the interplay of the precipitation reaction of mercuric iodide in a gel medium, its polymorphic transformation to a different crystalline form, and its redissolution in excess iodide. A phase diagram is constructed as a function of the initial concentrations of the reagents. The spatiotemporal evolution of these waves is thoroughly analyzed and seems to be a consequence of an anomalous dispersion relationship. Pattern selection and wavelengths of propagating waves are found to depend on initial concentrations of the reactants. The breakup of the waves is also investigated. While the breakdown of ripples and spirals is shown to be a consequence of a Doppler-like instability in conjunction with anomalous dispersion, the targets undergo a boundary defect-mediated breakup.
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Affiliation(s)
- Mahmoud M Ayass
- Department of Chemistry, American University of Beirut, P.O. Box 11-0236, Riad El-Solh 1107 2020, Beirut, Lebanon.
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Abstract
Formation of precipitation patterns and wave propagation in excitable media have attracted considerable scientific interest in the context of nonlinear chemical kinetics because of a new approach to micro and nanofabrication, in addition to some biological aspects. All precipitation patterns share common morphological characteristics, namely the formed patterns are stationary and no dynamical patterns can be observed in these classical precipitation systems (e.g., Liesegang phenomenon). However, it has been recently shown that in several circumstances dynamic patterns (chemical waves) can exist in purely inorganic precipitation systems similar to the well-known and studied (excitable) waves in Belousov-Zhabotinsky reaction. In this study, we show how to fine-tune the pattern characteristics in precipitation systems, such as the wavelength and the pattern morphology by changing the concentrations of the reagents, and we demonstrate chemical waves on a moving 3D spherical precipitation layer. We show that such precipitation waves have anomalous transport property, specifically superdiffusive nature, and it can be controlled by the initial concentration of the inner electrolyte. Moreover, we present several precipitation systems in which chemical wave propagation inside a moving precipitation layer can emerge. This observation points out the generality and robustness of similar behavior in diffusion-precipitation systems.
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Affiliation(s)
- Mahmoud M Ayass
- Department of Chemistry, American University of Beirut , P.O. Box 11-0236, Riad El-Solh 1107 2020, Beirut, Lebanon
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Ayass MM, Al-Ghoul M. Superdiffusive cusp-like waves in the mercuric iodide precipitate system and their transition to regular reaction bands. J Phys Chem A 2014; 118:3857-65. [PMID: 24813667 DOI: 10.1021/jp502217z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report a two-dimensional (2D) reaction-diffusion system that exhibits a superdiffusive propagating wave with anomalous cusp-like contours. This wave results from a leading precipitation reaction (wavefront) and a trailing redissolution (waveback) between initially separated mercuric chloride and potassium iodide to produce mercuric iodide precipitate (HgI2) in a thin sheet of a solid hydrogel (agar) medium. The propagation dynamics is accompanied by continuous polymorphic transformations between the metastable yellow crystals and the stable red crystals of HgI2. We study the dynamics of wavefront and waveback propagation that reveals interesting anomalous superdiffusive behavior without the influence of external enhancement. We find that a transition from superdiffusive to subdiffusive dynamics occurs as a function of outer iodide concentration. Inner mercuric concentrations lead to the transition from the anomalous cusp-like to cusp-free regular bands. While gel concentration affects the speed of propagation of the wave, it has no effect on its shape or on its superdiffusive dynamics. Microscopically, we show that the macroscopic wave propagation and polymorphic transformations are accompanied by an Ostwald ripening mechanism in which larger red HgI2 crystals are formed at the expense of smaller yellow HgI2 crystals.
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Affiliation(s)
- Mahmoud M Ayass
- Department of Chemistry, American University of Beirut , Riad El-Solh, 1107 2020 Beirut, Lebanon
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Ayass MM, Lagzi I, Al-Ghoul M. Three-dimensional superdiffusive chemical waves in a precipitation system. Phys Chem Chem Phys 2014; 16:24656-60. [DOI: 10.1039/c4cp02587c] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We report and characterize new three-dimensional precipitation circular targets and spiral waves with superdiffusive dynamics.
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Affiliation(s)
- M. M. Ayass
- Department of Chemistry
- American University of Beirut
- Riad El-Solh 1107 2020, Lebanon
| | - I. Lagzi
- Department of Physics
- Budapest University of Technology and Economics
- Budapest H-1521, Hungary
| | - M. Al-Ghoul
- Department of Chemistry
- American University of Beirut
- Riad El-Solh 1107 2020, Lebanon
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von Kameke A, Huhn F, Muñuzuri AP, Pérez-Muñuzuri V. Measurement of large spiral and target waves in chemical reaction-diffusion-advection systems: turbulent diffusion enhances pattern formation. PHYSICAL REVIEW LETTERS 2013; 110:088302. [PMID: 23473206 DOI: 10.1103/physrevlett.110.088302] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2012] [Indexed: 06/01/2023]
Abstract
In the absence of advection, reaction-diffusion systems are able to organize into spatiotemporal patterns, in particular spiral and target waves. Whenever advection is present that can be parametrized in terms of effective or turbulent diffusion D(*), these patterns should be attainable on a much greater, boosted length scale. However, so far, experimental evidence of these boosted patterns in a turbulent flow was lacking. Here, we report the first experimental observation of boosted target and spiral patterns in an excitable chemical reaction in a quasi-two-dimensional turbulent flow. The wave patterns observed are ~50 times larger than in the case of molecular diffusion only. We vary the turbulent diffusion coefficient D(*) of the flow and find that the fundamental Fisher-Kolmogorov-Petrovsky-Piskunov equation, v(f) proportional sqrt[D(*)], for the asymptotic speed of a reactive wave remains valid. However, not all measures of the boosted wave scale with D(*) as expected from molecular diffusion, since the wave fronts turn out to be highly filamentous.
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Affiliation(s)
- A von Kameke
- Group of Nonlinear Physics, University of Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
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Balankin AS, Mena B, Martínez-González CL, Matamoros DM. Random walk in chemical space of Cantor dust as a paradigm of superdiffusion. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:052101. [PMID: 23214828 DOI: 10.1103/physreve.86.052101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2012] [Revised: 07/31/2012] [Indexed: 06/01/2023]
Abstract
We point out that the chemical space of a totally disconnected Cantor dust K(n) [Symbol: see text E(n) is a compact metric space C(n) with the spectral dimension d(s) = d(ℓ) = n > D, where D and d(ℓ) = n are the fractal and chemical dimensions of K(n), respectively. Hence, we can define a random walk in the chemical space as a Markovian Gaussian process. The mapping of a random walk in C(n) into K(n) [Symbol: see text] E(n) defines the quenched Lévy flight on the Cantor dust with a single step duration independent of the step length. The equations, describing the superdiffusion and diffusion-reaction front propagation ruled by the local quenched Lévy flight on K(n) [Symbol: see text] E(n), are derived. The use of these equations to model superdiffusive phenomena, observed in some physical systems in which propagators decay faster than algebraically, is discussed.
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Affiliation(s)
- Alexander S Balankin
- Grupo Mecánica Fractal, Instituto Politécnico Nacional, México Distrito Federal 07738, Mexico
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Dong L, Li B, Shen Z, Wang Y, Lu N. Motion of rotating pairs in a hexagonal superlattice pattern within dielectric barrier discharge. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:036211. [PMID: 23031001 DOI: 10.1103/physreve.86.036211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2012] [Revised: 07/25/2012] [Indexed: 06/01/2023]
Abstract
Stochastic rotation of rotating pairs in a hexagonal superlattice pattern is observed in a dielectric barrier discharge system. It is found that the pairs rotate with orientation and diameter randomly changing by observing a series of frames recorded by a high speed video camera. Frames recorded by a high speed framing camera with an exposure time corresponding to current pulse phases in one half cycle of the applied voltage show that one rotating spot, six small spots, and another rotating spot in one cell discharge successively. Based on this discharging sequence, forces exerted on a rotating spot are analyzed at different discharging stages in a half voltage cycle. A resultant force on a rotating spot with both magnitude and direction varied leads to the stochastic rotation.
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Affiliation(s)
- Lifang Dong
- College of Physics Science and Technology, Hebei University, Baoding 071002, China
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12
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Berenstein I. Pattern formation in a reaction-diffusion-advection system with wave instability. CHAOS (WOODBURY, N.Y.) 2012; 22:023112. [PMID: 22757519 DOI: 10.1063/1.4704809] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
In this paper, we show by means of numerical simulations how new patterns can emerge in a system with wave instability when a unidirectional advective flow (plug flow) is added to the system. First, we introduce a three variable model with one activator and two inhibitors with similar kinetics to those of the Oregonator model of the Belousov-Zhabotinsky reaction. For this model, we explore the type of patterns that can be obtained without advection, and then explore the effect of different velocities of the advective flow for different patterns. We observe standing waves, and with flow there is a transition from out of phase oscillations between neighboring units to in-phase oscillations with a doubling in frequency. Also mixed and clustered states are generated at higher velocities of the advective flow. There is also a regime of "waving Turing patterns" (quasi-stationary structures that come close and separate periodically), where low advective flow is able to stabilize the stationary Turing pattern. At higher velocities, superposition and interaction of patterns are observed. For both types of patterns, at high velocities of the advective field, the known flow distributed oscillations are observed.
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Affiliation(s)
- Igal Berenstein
- Institut für Physik und Astronomie, Universität Potsdam, Karl-Liebknecht-Str. 24∕25, 14476 Potsdam, Germany
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Guiu-Souto J, Carballido-Landeira J, Muñuzuri AP. Characterizing topological transitions in a Turing-pattern-forming reaction-diffusion system. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:056205. [PMID: 23004841 DOI: 10.1103/physreve.85.056205] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2011] [Revised: 02/03/2012] [Indexed: 06/01/2023]
Abstract
Turing structures appear naturally and they are demonstrated under different spatial configurations such as stripes and spots as well as mixed states. The traditional tool to characterize these patterns is the Fourier transformation, which accounts for the spatial wavelength, but it fails to discriminate among different spatial configurations or mixed states. In this paper, we propose a parameter that clearly differentiates the different spatial configurations. As an application, we considered the transitions induced by an external forcing in a reaction-diffusion system although the results are straightforwardly extended to different problems with similar topologies. The method was also successfully tested on a temporally evolving pattern.
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Affiliation(s)
- Jacobo Guiu-Souto
- Group of Nonlinear Physics, Department of Physics, University of Santiago de Compostela, Spain.
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von Kameke A, Huhn F, Pérez-Muñuzuri V. Asymptotic diffusion coefficients and anomalous diffusion in a meandering jet flow under environmental fluctuations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:017201. [PMID: 22400707 DOI: 10.1103/physreve.85.017201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2011] [Revised: 12/16/2011] [Indexed: 05/31/2023]
Abstract
The nontrivial dependence of the asymptotic diffusion on noise intensity has been studied for a Hamiltonian flow mimicking the Gulf Jet Stream. Three different diffusion regimes have been observed depending on the noise intensity. For intermediate noise the asymptotic diffusion decreases with noise intensity at a rate which is linearly dependent to the flow's meander amplitude. Increasing the noise the fluid transport passes through a superdiffusive regime and finally becomes diffusive again at large noise intensities. The presence of inner circulation regimes in the flow has been found to be determinant to explain the observed behavior.
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Affiliation(s)
- A von Kameke
- Group of Nonlinear Physics, University of Santiago de Compostela, E-15782 Santiago de Compostela, Spain
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15
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von Kameke A, Huhn F, Fernández-García G, Muñuzuri AP, Pérez-Muñuzuri V. Double cascade turbulence and Richardson dispersion in a horizontal fluid flow induced by Faraday waves. PHYSICAL REVIEW LETTERS 2011; 107:074502. [PMID: 21902399 DOI: 10.1103/physrevlett.107.074502] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2011] [Indexed: 05/31/2023]
Abstract
We report the experimental observation of Richardson dispersion and a double cascade in a thin horizontal fluid flow induced by Faraday waves. The energy spectra and the mean spectral energy flux obtained from particle image velocimetry data suggest an inverse energy cascade with Kolmogorov type scaling E(k) ∝ k(γ), γ ≈ -5/3 and an E(k) ∝ k(γ), γ ≈ -3 enstrophy cascade. Particle transport is studied analyzing absolute and relative dispersion as well as the finite size Lyapunov exponent (FSLE) via the direct tracking of real particles and numerical advection of virtual particles. Richardson dispersion with <ΔR(2)(t)> ∝ t(3) is observed and is also reflected in the slopes of the FSLE (Λ ∝ ΔR(-2/3)) for virtual and real particles.
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Affiliation(s)
- A von Kameke
- Group of Nonlinear Physics, University of Santiago de Compostela, Spain.
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Guiu-Souto J, Carballido-Landeira J, Pérez-Villar V, Muñuzuri AP. Manipulation of diffusion coefficients via periodic vertical forcing controls the mechanism of Turing pattern formation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 82:066209. [PMID: 21230725 DOI: 10.1103/physreve.82.066209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Indexed: 05/30/2023]
Abstract
We study, theoretically and experimentally, the dynamical response of macroscopic Turing patterns to a mechanical periodic forcing which implies a sinusoidal modulation of gravity. Theoretical predictions indicate that the extra energy, due to the forcing, modifies the diffusion coefficient at a microscopic level, producing changes in the Turing domain and in the pattern characteristics, in particular its wavelength. To check the theoretical analysis, we perform numerical simulations with standard models. Experiments were also performed in the closed Belousov-Zhabotinsky reaction confined in AOT microemulsion (BZ-AOT system). Experiments as well as numerical and theoretical results show good agreement.
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Affiliation(s)
- Jacobo Guiu-Souto
- Department of Physics, University of Santiago de Compostela, Santiago de Compostela, Spain.
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