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Bag P, Nayak S, Ghosh PK. Particle-wall alignment interaction and active Brownian diffusion through narrow channels. SOFT MATTER 2024; 20:8267-8277. [PMID: 39382612 DOI: 10.1039/d4sm00848k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/10/2024]
Abstract
We numerically examine the impacts of particle-wall alignment interactions on active species diffusion through a structureless narrow two-dimensional channel. We consider particle-wall interaction to depend on the self-propulsion velocity direction whereby some specific particle's alignments with respect to the boundary walls are stabilized more. Further, the alignment interaction is meaningful as long as particles are close to the confining boundaries. Unbiased diffusion of active particles for various possible stable velocity alignments against the walls has been examined. We show that for the most stable configuration leading to the self-propulsion velocity direction perpendicular to the wall, diffusivity becomes inversely proportional to the square of the alignment interaction torque. On the other hand, when the self-propulsion velocity direction making an acute angle to the channel walls is the most stable configuration, diffusion exponentially grows with strengthening alignment interaction. Hence, particle-wall interaction plays a pivotal role in the transport control of active particles through narrow channels. Moreover, the impacts of the alignment interactions on diffusion largely depend on the particle's self-propulsion properties and its chirality. Our simulation results can potentially be used to understand unbiased diffusion of artificial or living micro/nano-objects (such as virus, bacteria, Janus particles, etc.) though narrow confined structures.
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Affiliation(s)
- Poulami Bag
- Department of Chemistry, Presidency University, Kolkata-700073, India.
| | - Shubhadip Nayak
- Department of Chemistry, Presidency University, Kolkata-700073, India.
| | - Pulak Kumar Ghosh
- Department of Chemistry, Presidency University, Kolkata-700073, India.
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2
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Wiśniewski M, Spiechowicz J. Memory-induced absolute negative mobility. CHAOS (WOODBURY, N.Y.) 2024; 34:073101. [PMID: 38949530 DOI: 10.1063/5.0213706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 06/10/2024] [Indexed: 07/02/2024]
Abstract
Non-Markovian systems form a broad area of physics that remains greatly unexplored despite years of intensive investigations. The spotlight is on memory as a source of effects that are absent in their Markovian counterparts. In this work, we dive into this problem and analyze a driven Brownian particle moving in a spatially periodic potential and exposed to correlated thermal noise. We show that the absolute negative mobility effect, in which the net movement of the particle is in the direction opposite to the average force acting on it, may be induced by the memory of the setup. To explain the origin of this phenomenon, we resort to the recently developed effective mass approach to dynamics of non-Markovian systems.
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Affiliation(s)
- M Wiśniewski
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
| | - J Spiechowicz
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
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3
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Wiśniewski M, Spiechowicz J. Paradoxical nature of negative mobility in the weak dissipation regime. CHAOS (WOODBURY, N.Y.) 2023; 33:2894479. [PMID: 37276563 DOI: 10.1063/5.0146649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 05/02/2023] [Indexed: 06/07/2023]
Abstract
We reinvestigate a paradigmatic model of nonequilibrium statistical physics consisting of an inertial Brownian particle in a symmetric periodic potential subjected to both a time-periodic force and a static bias. In doing so, we focus on the negative mobility phenomenon in which the average velocity of the particle is opposite to the constant force acting on it. Surprisingly, we find that in the weak dissipation regime, thermal fluctuations induce negative mobility much more frequently than it happens if dissipation is stronger. In particular, for the very first time, we report a parameter set in which thermal noise causes this effect in the nonlinear response regime. Moreover, we show that the coexistence of deterministic negative mobility and chaos is routinely encountered when approaching the overdamped limit in which chaos does not emerge rather than near the Hamiltonian regime of which chaos is one of the hallmarks. On the other hand, at non-zero temperature, the negative mobility in the weak dissipation regime is typically affected by weak ergodicity breaking. Our findings can be corroborated experimentally in a multitude of physical realizations, including, e.g., Josephson junctions and cold atoms dwelling in optical lattices.
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Affiliation(s)
- Mateusz Wiśniewski
- Institute of Physics, University of Silesia in Katowice, 41-500 Chorzów, Poland
| | - Jakub Spiechowicz
- Institute of Physics, University of Silesia in Katowice, 41-500 Chorzów, Poland
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4
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Dekhtyar ML, Rozenbaum VМ. Quadrupole versus dipole photomotors: Symmetry constraints and operating properties. J CHIN CHEM SOC-TAIP 2022. [DOI: 10.1002/jccs.202200427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
- Marina L. Dekhtyar
- Institute of Organic Chemistry National Academy of Sciences of Ukraine Kiev Ukraine
| | - Viktor М. Rozenbaum
- Chuiko Institute of Surface Chemistry National Academy of Sciences of Ukraine Kiev Ukraine
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5
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Wu JC, Lin FJ, Ai BQ. Absolute negative mobility of active polymer chains in steady laminar flows. SOFT MATTER 2022; 18:1194-1200. [PMID: 35037681 DOI: 10.1039/d1sm01664d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We investigate the transport of active polymer chains in steady laminar flows in the presence of thermal noise and an external constant force. In the model, the polymer chain is worm-like and is propelled by active forces along its tangent vectors. Compared with inertial Brownian particles, active polymer chains in steady laminar flows exhibit richer movement patterns due to their specific spatial structures. The simulation results show that the velocity-force relation is strongly dependent on the system parameters such as the chain length, bending rigidity, active force and so on. The polymer chain may move in some preferential movement directions and exhibits absolute negative mobility within appropriate parameter regimes, i.e., the polymer chain can move in a direction opposite to the external constant force. In particular, we can observe giant negative mobility in a broad range of parameter regimes.
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Affiliation(s)
- Jian-Chun Wu
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, South China Normal University, Guangzhou 510006, China.
- School of Physics and Electronic Information, Shangrao Normal University, Shangrao 334001, China
| | - Fu-Jun Lin
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, South China Normal University, Guangzhou 510006, China.
| | - Bao-Quan Ai
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, South China Normal University, Guangzhou 510006, China.
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6
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Li Y, Misko VR, Marchesoni F, Ghosh PK. Anisotropic Diffusion in Driven Convection Arrays. ENTROPY (BASEL, SWITZERLAND) 2021; 23:343. [PMID: 33799439 PMCID: PMC7999235 DOI: 10.3390/e23030343] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 03/10/2021] [Accepted: 03/11/2021] [Indexed: 11/17/2022]
Abstract
We numerically investigate the transport of a Brownian colloidal particle in a square array of planar counter-rotating convection rolls at high Péclet numbers. We show that an external force produces huge excess peaks of the particle's diffusion constant with a height that depends on the force orientation and intensity. In sharp contrast, the particle's mobility is isotropic and force independent. We relate such a nonlinear response of the system to the advection properties of the laminar flow in the suspension fluid.
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Affiliation(s)
- Yunyun Li
- Center for Phononics and Thermal Energy Science, Shanghai Key Laboratory of Special Artificial Microstructure Materials and Technology, School of Physics Science and Engineering, Tongji University, Shanghai 200092, China; (Y.L.); (V.R.M.)
| | - Vyacheslav R. Misko
- Center for Phononics and Thermal Energy Science, Shanghai Key Laboratory of Special Artificial Microstructure Materials and Technology, School of Physics Science and Engineering, Tongji University, Shanghai 200092, China; (Y.L.); (V.R.M.)
- μFlow Group, Department of Chemical Engineering, Vrije Universiteit Brussel, 1050 Brussels, Belgium
| | - Fabio Marchesoni
- Center for Phononics and Thermal Energy Science, Shanghai Key Laboratory of Special Artificial Microstructure Materials and Technology, School of Physics Science and Engineering, Tongji University, Shanghai 200092, China; (Y.L.); (V.R.M.)
- Dipartimento di Fisica, Università di Camerino, I-62032 Camerino, Italy
| | - Pulak K. Ghosh
- Department of Chemistry, Presidency University, Kolkata 700073, India;
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7
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Wu JC, An M, Ma WG. Spontaneous rectification and absolute negative mobility of inertial Brownian particles induced by Gaussian potentials in steady laminar flows. SOFT MATTER 2019; 15:7187-7194. [PMID: 31464332 DOI: 10.1039/c9sm00853e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We study the transport of inertial Brownian particles in steady laminar flows in the presence of two-dimensional Gaussian potentials. Through extensive numerical simulations, it is found that the transport is sensitively dependent on the external constant force and the Gaussian potential. Within tailored parameter regimes, the system exhibits a rich variety of transport behaviors. There exists the phenomenon of spontaneous rectification (SR), where the directed transport of particles can occur in the absence of any external driving forces. It is found that SR of the particles can be manipulated by the spatial position of the Gaussian potential. Moreover, when the potential lies at the center of the cellular flow, the system exhibits absolute negative mobility (ANM), i.e., the particles can move in a direction opposite to the constant force. More importantly, the phenomenon of ANM induced by Gaussian potentials is robust in a wide range of system parameters and can be further strengthened with the optimized parameters, which may pave the way to the implementation of related experiments.
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Affiliation(s)
- Jian-Chun Wu
- School of Physics and Electronic Information, Shangrao Normal University, Shangrao 334001, China.
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8
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Ai BQ, Zhu WJ, He YF, Zhong WR. Giant negative mobility of inertial particles caused by the periodic potential in steady laminar flows. J Chem Phys 2018; 149:164903. [DOI: 10.1063/1.5048319] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bao-quan Ai
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, Guangzhou 510006, China
| | - Wei-jing Zhu
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, Guangzhou 510006, China
| | - Ya-feng He
- College of Physics Science and Technology, Hebei University, Baoding 071002, China
| | - Wei-rong Zhong
- Siyuan Laboratory, Guangzhou Key Laboratory of Vacuum Coating Technologies and New Energy Materials, Department of Physics, Jinan University, Guangzhou 510632, China
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9
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Hydrodynamic and entropic effects on colloidal diffusion in corrugated channels. Proc Natl Acad Sci U S A 2017; 114:9564-9569. [PMID: 28831004 DOI: 10.1073/pnas.1707815114] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In the absence of advection, confined diffusion characterizes transport in many natural and artificial devices, such as ionic channels, zeolites, and nanopores. While extensive theoretical and numerical studies on this subject have produced many important predictions, experimental verifications of the predictions are rare. Here, we experimentally measure colloidal diffusion times in microchannels with periodically varying width and contrast results with predictions from the Fick-Jacobs theory and Brownian dynamics simulation. While the theory and simulation correctly predict the entropic effect of the varying channel width, they fail to account for hydrodynamic effects, which include both an overall decrease and a spatial variation of diffusivity in channels. Neglecting such hydrodynamic effects, the theory and simulation underestimate the mean and standard deviation of first passage times by 40% in channels with a neck width twice the particle diameter. We further show that the validity of the Fick-Jacobs theory can be restored by reformulating it in terms of the experimentally measured diffusivity. Our work thus shows that hydrodynamic effects play a key role in diffusive transport through narrow channels and should be included in theoretical and numerical models.
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10
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Wu JC, Ai BQ. Forced transport of self-propelled particles in a two-dimensional separate channel. Sci Rep 2016; 6:24001. [PMID: 27035860 PMCID: PMC4817505 DOI: 10.1038/srep24001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Accepted: 03/18/2016] [Indexed: 11/29/2022] Open
Abstract
Transport of self-propelled particles in a two-dimensional (2D) separate channel is investigated in the presence of the combined forces. By applying an ac force, the particles will be trapped by the separate walls. A dc force produces the asymmetry of the system and induces the longitudinal directed transport. Due to the competition between self-propulsion and the combined external forces, the transport is sensitive to the self-propelled speed and the particle radius, thus one can separate the particles based on these properties.
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Affiliation(s)
- Jian-chun Wu
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, Guangzhou 510006, China
| | - Bao-quan Ai
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, Guangzhou 510006, China
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11
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Wang X. Biased transport of Brownian particles in a weakly corrugated serpentine channel. J Chem Phys 2016; 144:044101. [DOI: 10.1063/1.4940314] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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12
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Dandogbessi BS, Kenfack A. Absolute negative mobility induced by potential phase modulation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:062903. [PMID: 26764770 DOI: 10.1103/physreve.92.062903] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Indexed: 06/05/2023]
Abstract
We investigate the transport properties of a particle subjected to a deterministic inertial rocking system, under a constant bias, for which the phase of the symmetric spatial potential used is time modulated. We show that this modulated phase, assisted by a periodic driving force, can lead to the occurrence of the so-called absolute negative mobility (ANM), the phenomenon in which the particle surprisingly moves against the bias. Furthermore, we discover that ANM predominantly originates from chaotic-periodic transitions. While a detailed mechanism of ANM remains unclear, we show that one can manipulate the control parameters, i.e., the amplitude and the frequency of the phase, in order to enforce the motion of the particle in a given direction. Finally, for this experimentally realizable system, we devise a two-parameter current plot which may be a good guide for controlling ANM.
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Affiliation(s)
- Bruno S Dandogbessi
- Theoretical Physics Department, African University of Science and Technology, Km 10 Airport Road, Galadimawa, Abuja, Nigeria
| | - Anatole Kenfack
- Physikalische und Theoretische Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, Takustraße 3, DE-14195 Berlin, Germany
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13
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Wu JC, Chen Q, Wang R, Ai BQ. Diffusion and mobility of anisotropic particles in tilted periodic structures. CHAOS (WOODBURY, N.Y.) 2015; 25:023114. [PMID: 25725650 DOI: 10.1063/1.4913491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We numerically investigated the transport of anisotropic particles in tilted periodic structures. The diffusion and mobility of the particles demonstrate distinct behaviors dependence on the shape of the particles. In two-dimensional (2D) periodic potentials, we find that the mobility is influenced a little by the anisotropy of the particle, while the diffusion increases monotonically with the increasing of the particle anisotropy for large enough biased force. However, due to the sensitivity of the channels for the particle anisotropy, the transport in smooth channels is obviously different from that in energy potentials. The mobility decreases monotonically with the increasing of the particle anisotropy, while the diffusion can be a non-monotonic function of the particle anisotropy with a peak under appropriate biased force.
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Affiliation(s)
- Jian-chun Wu
- Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, 510006 Guangzhou, China
| | - Qun Chen
- Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, 510006 Guangzhou, China
| | - Rang Wang
- Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, 510006 Guangzhou, China
| | - Bao-quan Ai
- Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, 510006 Guangzhou, China
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14
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Ai BQ, He YF, Zhong WR. Entropic Ratchet transport of interacting active Brownian particles. J Chem Phys 2014; 141:194111. [DOI: 10.1063/1.4901896] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Bao-Quan Ai
- Laboratory of Quantum Engineering and Quantum Materials, School of Physics and Telecommunication Engineering, South China Normal University, 510006 Guangzhou, China
| | - Ya-Feng He
- College of Physics Science and Technology, Hebei University, 071002 Baoding, China
| | - Wei-Rong Zhong
- Department of Physics and Siyuan Laboratory, College of Science and Engineering, Jinan University, 510632 Guangzhou, China
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15
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Ghosh PK. Communication: Escape kinetics of self-propelled Janus particles from a cavity: Numerical simulations. J Chem Phys 2014; 141:061102. [DOI: 10.1063/1.4892970] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Ghosh PK, Hänggi P, Marchesoni F, Nori F. Giant negative mobility of Janus particles in a corrugated channel. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:062115. [PMID: 25019733 DOI: 10.1103/physreve.89.062115] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Indexed: 06/03/2023]
Abstract
We numerically simulate the transport of elliptic Janus particles along narrow two-dimensional channels with reflecting walls. The self-propulsion velocity of the particle is oriented along either its major (prolate) or minor axis (oblate). In smooth channels, we observe long diffusion transients: ballistic for prolate particles and zero diffusion for oblate particles. Placed in a rough channel, prolate particles tend to drift against an applied drive by tumbling over the wall protrusions; for appropriate aspect ratios, the modulus of their negative mobility grows exceedingly large (giant negative mobility). This suggests that a small external drive suffices to efficiently direct self-propulsion of rod-like Janus particles in rough channels.
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Affiliation(s)
- Pulak K Ghosh
- Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Peter Hänggi
- Institut für Physik, Universität Augsburg, D-86135 Augsburg, Germany and Center for Phononics and Thermal Energy Science and School of Physical Science and Engineering, Tongji University, 200092 Shanghai, People's Republic of China
| | - Fabio Marchesoni
- Dipartimento di Fisica, Università di Camerino, I-62032 Camerino, Italy and CEMS, RIKEN, Saitama, 351-0198, Japan
| | - Franco Nori
- CEMS, RIKEN, Saitama, 351-0198, Japan and Physics Department, University of Michigan, Ann Arbor, Michigan 48109-1040, USA
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17
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Ai BQ, Wu JC. Transport of finite size particles in confined narrow channels: Diffusion, coherence, and particle separation. J Chem Phys 2013; 139:034114. [DOI: 10.1063/1.4813798] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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18
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Li FG, Ai BQ. Current control in a two-dimensional channel with nonstraight midline and varying width. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:062128. [PMID: 23848648 DOI: 10.1103/physreve.87.062128] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Indexed: 06/02/2023]
Abstract
Transport of overdamped Brownian particles in a two-dimensional channel with nonstraight midline and narrow varying width is investigated in the presence of an asymmetric unbiased external force. In the adiabatic limit, we obtain the analytical expression of the directed current. It is found that the current is manipulated by changing the phase shift between the top and bottom walls of the channel. As the phase shift is increased from 0 to π, the variation of the channel width decreases and the current also decreases. Remarkably, the current is always zero when the phase shift is equal to π, where the entropic barrier disappears. In addition, the temporal asymmetric parameter of the unbiased force not only determines the direction of the current but also affects its amplitude.
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Affiliation(s)
- Feng-guo Li
- Laboratory of Quantum Information Technology, ICMP and SPTE, South China Normal University, 510006 Guangzhou, China
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19
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Ai BQ, He YF, Li FG, Zhong WR. Hydrodynamically enforced entropic Brownian pump. J Chem Phys 2013; 138:154107. [DOI: 10.1063/1.4801661] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Recho P, Truskinovsky L. Asymmetry between pushing and pulling for crawling cells. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:022720. [PMID: 23496561 DOI: 10.1103/physreve.87.022720] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2012] [Revised: 02/13/2013] [Indexed: 06/01/2023]
Abstract
Eukaryotic cells possess motility mechanisms allowing them not only to self-propel but also to exert forces on obstacles (to push) and to carry cargoes (to pull). To study the inherent asymmetry between active pushing and pulling we model a crawling acto-myosin cell extract as a one-dimensional layer of active gel subjected to external forces. We show that pushing is controlled by protrusion and that the macroscopic signature of the protrusion dominated motility mechanism is concavity of the force-velocity relation. In contrast, pulling is driven by protrusion only at small values of the pulling force and it is replaced by contraction when the pulling force is sufficiently large. This leads to more complex convex-concave structure of the force-velocity relation; in particular, competition between protrusion and contraction can produce negative mobility in a biologically relevant range. The model illustrates active readjustment of the force generating machinery in response to changes in the dipole structure of external forces. The possibility of switching between complementary active mechanisms implies that if necessary "pushers" can replace "pullers" and vice versa.
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Affiliation(s)
- Pierre Recho
- LMS, CNRS-UMR 7649, Ecole Polytechnique, Route de Saclay, 91128 Palaiseau, France
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21
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Bosi L, Ghosh PK, Marchesoni F. Analytical estimates of free brownian diffusion times in corrugated narrow channels. J Chem Phys 2012; 137:174110. [PMID: 23145720 DOI: 10.1063/1.4764297] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The diffusion of a suspended brownian particle along a sinusoidally corrugated narrow channel is investigated to assess the validity of two competing analytical schemes, both based on effective one-dimensional kinetic equations, one continuous (entropic channel scheme) and the other discrete (random walker scheme). For narrow pores, the characteristic diffusion time scale is represented by the mean first exit time out of a channel compartment. Such a diffusion time has been analytically calculated in both approximate schemes; the two analytical results coincide in leading order and are in excellent agreement with the simulation data.
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Affiliation(s)
- Leone Bosi
- Dipartimento di Fisica, Università di Camerino, I-62032 Camerino, Italy
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22
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Ai BQ, Shao ZG, Zhong WR. Rectified Brownian transport in corrugated channels: Fractional Brownian motion and Lévy flights. J Chem Phys 2012; 137:174101. [DOI: 10.1063/1.4764472] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Dekhtyar ML, Rozenbaum VM. Symmetry interplay in Brownian photomotors: From a single-molecule device to ensemble transport. J Chem Phys 2012; 137:124306. [PMID: 23020330 DOI: 10.1063/1.4754274] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Unlike most of Brownian motor models in which the state of a point particle is described by a single scalar fluctuating parameter, we consider light-induced dichotomic fluctuations of electron density distributions in an extended molecule moving in the electrostatic periodic potential of a polar substrate. This model implies that the potential energy profiles of two motor states differ substantially and their symmetry is dictated by the interplay between the symmetries of the substrate potential and of molecular electronic states. As shown, a necessary condition for the occurrence of directed motion, the asymmetry of the potential energy profiles, is satisfied for (i) symmetric electron density distributions in molecules on asymmetric substrates and (ii) asymmetric electron density distributions in molecules on symmetric substrates. In the former case, the average velocity of directed motion is independent of molecular orientations and the ensemble of molecules moves as a whole, whereas in the latter case, oppositely oriented molecules move counterdirectionally thus causing the ensemble to diffuse. Using quantum chemical data for a specific organic-based photomotor as an example, we demonstrate that the behavior of molecular ensembles is controllable by switching on/off resonance laser radiation: they can be transported as a whole or separated into differently oriented molecules depending on the ratio of symmetric and antisymmetric contributions to the substrate electrostatic potential and to the molecular electron density distributions.
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Affiliation(s)
- Marina L Dekhtyar
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Murmanskaya str. 5, Kiev 02094, Ukraine.
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24
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Ghosh PK, Hänggi P, Marchesoni F, Nori F, Schmid G. Brownian transport in corrugated channels with inertia. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:021112. [PMID: 23005727 DOI: 10.1103/physreve.86.021112] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2011] [Revised: 06/11/2012] [Indexed: 06/01/2023]
Abstract
Transport of suspended Brownian particles dc driven along corrugated narrow channels is numerically investigated in the regime of finite damping. We show that inertial corrections cannot be neglected as long as the width of the channel bottlenecks is smaller than an appropriate particle diffusion length, which depends on the the channel corrugation and the drive intensity. With such a diffusion length being inversely proportional to the damping constant, transport through sufficiently narrow obstructions turns out to be always sensitive to the viscosity of the suspension fluid. The inertia corrections to the transport quantifiers, mobility, and diffusivity markedly differ for smoothly and sharply corrugated channels.
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Affiliation(s)
- P K Ghosh
- Advanced Science Institute, RIKEN, Wako-shi, Saitama 351-0198, Japan
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Ghosh PK, Hänggi P, Marchesoni F, Martens S, Nori F, Schimansky-Geier L, Schmid G. Driven Brownian transport through arrays of symmetric obstacles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:011101. [PMID: 22400506 DOI: 10.1103/physreve.85.011101] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2011] [Indexed: 05/31/2023]
Abstract
We numerically investigate the transport of a suspended overdamped Brownian particle which is driven through a two-dimensional rectangular array of circular obstacles with finite radius. Two limiting cases are considered in detail, namely, when the constant drive is parallel to the principal or the diagonal array axes. This corresponds to studying the Brownian transport in periodic channels with reflecting walls of different topologies. The mobility and diffusivity of the transported particles in such channels are determined as functions of the drive and the array geometric parameters. Prominent transport features, like negative differential mobilities, excess diffusion peaks, and unconventional asymptotic behaviors, are explained in terms of two distinct lengths, the size of single obstacles (trapping length), and the lattice constant of the array (local correlation length). Local correlation effects are further analyzed by continuously rotating the drive between the two limiting orientations.
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Affiliation(s)
- P K Ghosh
- Advanced Science Institute, RIKEN, Wako-shi, Saitama 351-0198, Japan
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26
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Du L, Mei D. Absolute negative mobility in a vibrational motor. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:011148. [PMID: 22400553 DOI: 10.1103/physreve.85.011148] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2011] [Revised: 12/01/2011] [Indexed: 05/31/2023]
Abstract
An anomalous transport phenomenon termed absolute negative mobility (ANM) was observed in a vibrational motor, where an additional time-periodic signal filled the role usually played by noise in a Brownian motor. Within a tailored parameter regime, the ANM behavior is maximized at two regimes upon variation of the bias. The observed ANM still survives at a wide range of the driving strength and angular frequency of the additional signal.
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Affiliation(s)
- Luchun Du
- Department of Physics, Yunnan University, Kunming 650091, China.
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27
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Martens S, Schmid G, Schimansky-Geier L, Hänggi P. Biased Brownian motion in extremely corrugated tubes. CHAOS (WOODBURY, N.Y.) 2011; 21:047518. [PMID: 22225392 DOI: 10.1063/1.3658621] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Biased Brownian motion of point-size particles in a three-dimensional tube with varying cross-section is investigated. In the fashion of our recent work, Martens et al. [Phys. Rev. E 83, 051135 (2011)] we employ an asymptotic analysis to the stationary probability density in a geometric parameter of the tube geometry. We demonstrate that the leading order term is equivalent to the Fick-Jacobs approximation. Expression for the higher order corrections to the probability density is derived. Using this expansion orders, we obtain that in the diffusion dominated regime the average particle current equals the zeroth order Fick-Jacobs result corrected by a factor including the corrugation of the tube geometry. In particular, we demonstrate that this estimate is more accurate for extremely corrugated geometries compared with the common applied method using a spatially-dependent diffusion coefficient D(x, f) which substitutes the constant diffusion coefficient in the common Fick-Jacobs equation. The analytic findings are corroborated with the finite element calculation of a sinusoidal-shaped tube.
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Affiliation(s)
- S Martens
- Department of Physics, Humboldt-Universität zu Berlin, Newtonstr. 15, 12489 Berlin, Germany.
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28
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Ghosh PK, Glavey R, Marchesoni F, Savel'ev SE, Nori F. Geometric stochastic resonance in a double cavity. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:011109. [PMID: 21867115 DOI: 10.1103/physreve.84.011109] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2011] [Indexed: 05/22/2023]
Abstract
Geometric stochastic resonance of particles diffusing across a porous membrane subject to oscillating forces is characterized as a synchronization process. Noninteracting particle currents through a symmetric membrane pore are driven either perpendicular or parallel to the membrane, whereas, harmonic-mixing spectral current components are generated by the combined action of perpendicular and parallel drives. In view of potential applications to the transport of colloids and biological molecules through narrow pores, we also consider the role of particle repulsion as a controlling factor.
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Affiliation(s)
- Pulak K Ghosh
- Advanced Science Institute, RIKEN, Wako-shi, Saitama, 351-0198, Japan
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29
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Martens S, Schmid G, Schimansky-Geier L, Hänggi P. Entropic particle transport: higher-order corrections to the Fick-Jacobs diffusion equation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:051135. [PMID: 21728518 DOI: 10.1103/physreve.83.051135] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2011] [Indexed: 05/31/2023]
Abstract
Transport of point-size Brownian particles under the influence of a constant and uniform force field through a planar three-dimensional channel with smoothly varying, axis-symmetric periodic side walls is investigated. Here we employ an asymptotic analysis in the ratio between the difference of the widest and the most narrow constriction divided through the period length of the channel geometry. We demonstrate that the leading-order term is equivalent to the Fick-Jacobs approximation. By use of the higher-order corrections to the probability density we show that in the diffusion-dominated regime the average transport velocity is obtained as the product of the zeroth-order Fick-Jacobs result and the expectation value of the spatially dependent diffusion coefficient D(x), which substitutes the constant diffusion coefficient in the common Fick-Jacobs equation. The analytic findings are corroborated with the precise numerical results of a finite element calculation of the Smoluchowski diffusive particle dynamics occurring in a reflection symmetric sinusoidal-shaped channel.
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Affiliation(s)
- S Martens
- Department of Physics, Humboldt-Universität zu Berlin, Berlin, Germany.
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Januszewski M, Łuczka J. Indirect control of transport and interaction-induced negative mobility in an overdamped system of two coupled particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:051117. [PMID: 21728500 DOI: 10.1103/physreve.83.051117] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2010] [Revised: 02/22/2011] [Indexed: 05/31/2023]
Abstract
One-dimensional transport of an overdamped Brownian particle biased by an external constant force does not exhibit negative mobility. However, when the particle is coupled to another particle, negative mobility can arise. We present a minimal model and propose a scenario in which only one (say, the first) particle is dc biased by a constant force and ac driven by an unbiased harmonic signal. In this way we intend to achieve two aims at once: (i) negative mobility of the first particle, which is exclusively induced by coupling to the second particle and (ii) indirect control of the transport properties of the second particle by manipulating the first particle only. For instance, the sign and amplitude of the averaged stationary velocity of the second particle can be steered by the driving applied to the first particle. As an experimentally realizable system, we propose two coupled resistively shunted Josephson junctions.
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Affiliation(s)
- M Januszewski
- Institute of Physics, University of Silesia, Katowice, Poland
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Berezhkovskii AM, Dagdug L. Analytical treatment of biased diffusion in tubes with periodic dead ends. J Chem Phys 2011; 134:124109. [PMID: 21456647 PMCID: PMC3078163 DOI: 10.1063/1.3567187] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2011] [Accepted: 02/25/2011] [Indexed: 11/14/2022] Open
Abstract
Effective mobility and diffusion coefficient of a particle in a tube with identical periodic dead ends characterize the motion on large time scale, when the particle displacement significantly exceeds the tube period. We derive formulas that show how these transport coefficients depend on the driving force and the geometric parameters of the system. Numerical tests show that values of the transport coefficients obtained from Brownian dynamics simulations are in excellent agreement with our theoretical predictions.
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Affiliation(s)
- Alexander M Berezhkovskii
- Mathematical and Statistical Computing Laboratory, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA
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Borromeo M, Marchesoni F, Ghosh PK. Communication: Driven Brownian transport in eccentric septate channels. J Chem Phys 2011; 134:051101. [DOI: 10.1063/1.3535559] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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