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Dessup T, Coste C, Saint Jean M. Enhancement of Brownian motion for a chain of particles in a periodic potential. Phys Rev E 2018; 97:022103. [PMID: 29548165 DOI: 10.1103/physreve.97.022103] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Indexed: 11/07/2022]
Abstract
The transport of particles in very confined channels in which single file diffusion occurs has been largely studied in systems where the transverse confining potential is smooth. However, in actual physical systems, this potential may exhibit both static corrugations and time fluctuations. Some recent results suggest the important role played by this nonsmoothness of the confining potential. In particular, quite surprisingly, an enhancement of the Brownian motion of the particles has been evidenced in these kinds of systems. We show that this enhancement results from the commensurate effects induced by the underlying potential on the vibrational spectra of the chain of particles, and from the effective temperature associated with its time fluctuations. We will restrict our derivation to the case of low temperatures for which the mean squared displacement of the particles remains smaller than the potential period.
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Affiliation(s)
- Tommy Dessup
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris-Diderot (Paris 7), 75205 Paris Cedex 13, France
| | - Christophe Coste
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris-Diderot (Paris 7), 75205 Paris Cedex 13, France
| | - Michel Saint Jean
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris-Diderot (Paris 7), 75205 Paris Cedex 13, France
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Dessup T, Coste C, Saint Jean M. Interaction, coalescence, and collapse of localized patterns in a quasi-one-dimensional system of interacting particles. Phys Rev E 2017; 95:012206. [PMID: 28208356 DOI: 10.1103/physreve.95.012206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Indexed: 11/07/2022]
Abstract
We study the path toward equilibrium of pairs of solitary wave envelopes (bubbles) that modulate a regular zigzag pattern in an annular channel. We evidence that bubble pairs are metastable states, which spontaneously evolve toward a stable single bubble. We exhibit the concept of topological frustration of a bubble pair. A configuration is frustrated when the particles between the two bubbles are not organized in a modulated staggered row. For a nonfrustrated (NF) bubble pair configuration, the bubbles interaction is attractive, whereas it is repulsive for a frustrated (F) configuration. We describe a model of interacting solitary wave that provides all qualitative characteristics of the interaction force: It is attractive for NF systems and repulsive for F systems and decreases exponentially with the bubbles distance. Moreover, for NF systems, the bubbles come closer and eventually merge as a single bubble, in a coalescence process. We also evidence a collapse process, in which one bubble shrinks in favor of the other one, overcoming an energetic barrier in phase space. This process is relevant for both NF systems and F systems. In NF systems, the coalescence prevails at low temperature, whereas thermally activated jumps make the collapse prevail at high temperature. In F systems, the path toward equilibrium involves a collapse process regardless of the temperature.
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Affiliation(s)
- Tommy Dessup
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Christophe Coste
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Michel Saint Jean
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
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Taloni A, Flomenbom O, Castañeda-Priego R, Marchesoni F. Single file dynamics in soft materials. SOFT MATTER 2017; 13:1096-1106. [PMID: 28119987 DOI: 10.1039/c6sm02570f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The term single file (SF) dynamics refers to the motion of an assembly of particles through a channel with cross-sections comparable to the particles' diameter. Single file diffusion (SFD) is then the diffusion of a tagged particle in a single file, i.e., under the condition that particle passing is not allowed. SFD accounts for a large variety of processes in nature, including diffusion of colloids in synthetic and natural channels, biological motors along molecular chains, electrons in proteins and liquid helium, ions through membranes, just to mention a few examples. Albeit introduced in 1965s, over the last decade the classical notion of SF dynamics has been generalised to account for a more realistic modelling of the particle properties, file geometry, particle-particle and channel-particle interactions, which paves the way to remarkable applications of the SF model, for instance, in the technology of bio-integrated nanodevices. We provide here a comprehensive review of the recent advances in the theory of SF dynamics with the purpose of spurring further experimental work.
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Affiliation(s)
- Alessandro Taloni
- Center for Complexity & Biosystems, Physics Department, University of Milan "La Statale", Via Giovanni Celoria 16, 20133 Milano, Italy and CNR-ISC - Center for Complex Systems, Via dei Taurini 19, 00185, Roma, Italy.
| | | | - Ramón Castañeda-Priego
- Division of Science and Engineering, University of Guanajuato, Loma del Bosque 103, Lomas del Campestre, 37150, Leon, Gto., Mexico
| | - Fabio Marchesoni
- Dipartimento di Fisica, Universitá di Camerino, I-62032 Camerino, Italy.
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Coste C, Delfau JB, Saint Jean M. Longitudinal and Transverse Single File Diffusion in Quasi-1D Systems. ACTA ACUST UNITED AC 2014. [DOI: 10.1142/s1793048014400025] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We review our recent results on Single File Diffusion (SFD) of a chain of particles that cannot cross each other, in a thermal bath, with long ranged interactions, and arbitrary damping. We exhibit new behaviors specifically associated to small systems and to small damping. The fluctuation dynamics is explained by the decomposition of the particles' motion in the normal modes of the chain. For longitudinal fluctuations, we emphasize the relevance of the soft mode linked to the translational invariance of the system to the long time SFD behavior. We show that close to the zigzag threshold, the transverse fluctuations also exhibit the SFD behavior, characterized by a mean square displacement that increases as the square root of time. This cannot be explained by the single file ordering, and the SFD behavior results from the strong correlation of the transverse displacements of neighbouring particles near the bifurcation. Extending our analytical modelization, we demonstrate the existence of this subdiffusive regime near the zigzag transition, in the thermodynamic limit. The zigzag transition is a supercritical pitchfork bifurcation, and we show that the transverse SFD behavior is closely linked to the vanishing of the frequency of the zigzag transverse mode at the bifurcation threshold. [Formula: see text] Special Issue Comments: This article presents mathematical results on the dynamics in files with longitudinal movements. This article is connected to the Special Issue articles about advanced statistical properties in single file dynamics,28 expanding files,63 and files with force and advanced formulations.29
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Affiliation(s)
- Christophe Coste
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Jean-Baptiste Delfau
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Michel Saint Jean
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
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Leibovich N, Barkai E. Everlasting effect of initial conditions on single-file diffusion. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:032107. [PMID: 24125214 DOI: 10.1103/physreve.88.032107] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Indexed: 06/02/2023]
Abstract
We study the dynamics of a tagged particle in an environment of point Brownian particles with hard-core interactions in an infinite one-dimensional channel (a single-file model). In particular, we examine the influence of initial conditions on the dynamics of the tagged particle. We compare two initial conditions: equal distances between particles and uniform density distribution. The effect is shown by the differences of mean-square-displacement and correlation function for the two ensembles of initial conditions. We discuss the violation of Einstein relation, and its dependence on the initial condition, and the difference between time and ensemble averaging. More specifically, using the Jepsen line, we will discuss how transport coefficients, like diffusivity, depend on the initial state. Our work shows that initial conditions determine the long time limit of the dynamics, and in this sense the system never forgets its initial state in complete contrast with thermal systems (i.e., a closed system that attains equilibrium independent of the initial state).
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Affiliation(s)
- N Leibovich
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar Ilan University, Ramat-Gan 52900, Israel
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Delfau JB, Coste C, Saint Jean M. Noisy zigzag transition, fluctuations, and thermal bifurcation threshold. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:062135. [PMID: 23848655 DOI: 10.1103/physreve.87.062135] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Indexed: 06/02/2023]
Abstract
We study the zigzag transition in a system of particles with screened electrostatic interaction, submitted to a thermal noise. At finite temperature, this configurational phase transition is an example of noisy supercritical pitchfork bifurcation. The measurements of transverse fluctuations allow a complete description of the bifurcation region, which takes place between the deterministic threshold and a thermal threshold beyond which thermal fluctuations do not allow the system to flip between the symmetric zigzag configurations. We show that a divergence of the saturation time for the transverse fluctuations allows a precise and unambiguous definition of this thermal threshold. Its evolution with the temperature is shown to be in good agreement with theoretical predictions from noisy bifurcation theory.
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Affiliation(s)
- Jean-Baptiste Delfau
- Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
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Euán-Díaz EC, Misko VR, Peeters FM, Herrera-Velarde S, Castañeda-Priego R. Single-file diffusion in periodic energy landscapes: the role of hydrodynamic interactions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:031123. [PMID: 23030882 DOI: 10.1103/physreve.86.031123] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2012] [Indexed: 06/01/2023]
Abstract
We report on the dynamical properties of interacting colloids confined to one dimension and subjected to external periodic energy landscapes. We particularly focus on the influence of hydrodynamic interactions on the mean-square displacement. Using Brownian dynamics simulations, we study colloidal systems with two types of repulsive interparticle interactions, namely, Yukawa and superparamagnetic potentials. We find that in the homogeneous case, hydrodynamic interactions lead to an enhancement of the particle mobility and the mean-square displacement at long times scales as t(α), with α=1/2+ε and ε being a small correction. This correction, however, becomes much more important in the presence of an external field, which breaks the homogeneity of the particle distribution along the line and, therefore, promotes a richer dynamical scenario due to the hydrodynamical coupling among particles. We provide here the complete dynamical scenario in terms of the external potential parameters: amplitude and commensurability.
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Affiliation(s)
- E C Euán-Díaz
- Division of Sciences and Engineering, University of Guanajuato, Loma del Bosque 103, Lomas del Campestre, 37150 León, Guanajuato, Mexico
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Delfau JB, Coste C, Saint Jean M. Single-file diffusion of particles in a box: transient behaviors. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:061111. [PMID: 23005055 DOI: 10.1103/physreve.85.061111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 05/03/2012] [Indexed: 06/01/2023]
Abstract
We consider a finite number of particles with soft-core interactions, subjected to thermal fluctuations and confined in a box with excluded mutual passage. Using numerical simulations, we focus on the influence of the longitudinal confinement on the transient behavior of the longitudinal mean squared displacement. We exhibit several power laws for its time evolution according to the confinement range and to the rank of the particle in the file. We model the fluctuations of the particles as those of a chain of springs and point masses in a thermal bath. Our main conclusion is that actual system dynamics can be described in terms of the normal oscillation modes of this chain. Moreover, we obtain complete expressions for the physical observables, in excellent agreement with our simulations. The correct power laws for the time dependency of the mean squared displacement in the various regimes are recovered, and analytical expressions of the prefactors according to the relevant parameters are given.
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Affiliation(s)
- Jean-Baptiste Delfau
- Laboratoire Matière et Systèmes Complexes, Unité Mixte de Recherche, Centre National de la Recherche Scientifique 7057, Université Paris Diderot, Paris, France
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