Rigidity generation by nonthermal fluctuations

Passive viscoelastic response of striated muscles

Muscle cells with sarcomeric structure exhibit highly non trivial passive mechanical response. The difficulty of its continuum modeling is due to the presence of long-range interactions transmitted by extended protein skeleton. To build a rheological model for muscle 'material', we use a stochastic micromodel, and derive a linear response theory for a half-sarcomere, which can be extended to the whole fibre. Instead of the first order rheological equation, anticipated by Hill on the phenomenological grounds, we obtain a novel second order equation which shows that tension depends not only on its current length and the velocity of stretching, but also on its acceleration. Expressing the model in terms of elementary rheological elements, we show that one contribution to the visco-elastic properties of the fibre originates in cross-bridges, while the other can be linked to inert elements which move in the sarcoplasm. We apply this model to explain the striking qualitative difference between the relaxation in experiments involving perturbation of length vs. those involving perturbation of force, and we use the values of the microscopic parameters for frog muscles to show that the model is in excellent quantitative agreement with physiological experiments.

Dynamics of a mechanical system with multiple degrees of freedom out of thermal equilibrium

Out of thermal equilibrium, an environment imposes effective mechanical forces on nanofabricated devices as well as on microscopic chemical or biological systems. Here we address the question of how to calculate these forces together with the response of the system from first principles. We show that an ideal gaslike environment, even near thermal equilibrium, can enforce a specific steady state on the system by creating effective potentials in otherwise homogeneous space. An example of stable and unstable rectifications of thermal fluctuations is presented using a modified Feynman-Smoluchowski ratchet with two degrees of freedom. Moreover, the stability of a steady configuration depends on its chiral symmetry. The transition rate probabilities and the corresponding kinetic equations are derived for a complex mechanical system with arbitrary degrees of freedom. This work, therefore, extends the applicability of mechanical systems as a toy model playground of statistical physics for active and living matter with multiple degrees of freedom.

Statistical mechanics of the Huxley-Simmons model

The chemomechanical model of Huxley and Simmons (HS) [A. F. Huxley and R. M. Simmons, Nature 233, 533 (1971)NATUAS0028-083610.1038/233533a0] provides a paradigmatic description of mechanically induced collective conformational changes relevant in a variety of biological contexts, from muscles power stroke and hair cell gating to integrin binding and hairpin unzipping. We develop a statistical mechanical perspective on the HS model by exploiting a formal analogy with a paramagnetic Ising model. We first study the equilibrium HS model with a finite number of elements and compute explicitly its mechanical and thermal properties. To model kinetics, we derive a master equation and solve it for several loading protocols. The developed formalism is applicable to a broad range of allosteric systems with mean-field interactions.