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Shimanouchi T, Iwamura M, Sano Y, Hayashi K, Noda M, Kimura Y. Classification of binding property of amyloid β to lipid membranes: Membranomic research using quartz crystal microbalance combined with the immobilization of lipid planar membranes. BIOCHIMICA ET BIOPHYSICA ACTA. PROTEINS AND PROTEOMICS 2024; 1872:140987. [PMID: 38128808 DOI: 10.1016/j.bbapap.2023.140987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/10/2023] [Accepted: 12/13/2023] [Indexed: 12/23/2023]
Abstract
A biomembrane-related fibrillogenesis of Amyloid β from Alzheimer' disease (Aβ) is closely related to its accumulation behavior. A binding property of Aβ peptides from Alzheimer' disease to lipid membranes was then classified by a quartz crystal microbalance (QCM) method combined with an immobilization technique using thiol self-assembled membrane. The accumulated amounts of Aβ, Δfmax, was determined from the measurement of the maximal frequency reduction using QCM. The plots of Δfmax to Aβ concentration gave the slope and saturated value of Δfmax, (Δfmax)sat that are the parameters for binding property of Aβ to lipid membranes. Therefore, the Aβ-binding property on lipid membranes was classified by the slope and (Δfmax)sat. The plural lipid system was described as X + Y where X = L1, L1/L2, and L1/L2/L3. The slope and (Δfmax)sat values plotted as a function of mixing ratio of Y to X was classified on a basis of the lever principle (LP). The LP violation observed in both parameters resulted from the formation of the crevice or pothole, as Aβ-specific binding site, generated at the boundary between ld and lo phases. The LP violation observed only in the slope resulted from glycolipid-rich domain acting as Aβ-specific binding site. Furthermore, lipid planar membranes indicating strong LP violation favored strong fibrillogenesis. Especially, lipid planar membranes indicating the LP violation only in the slope induced lateral aggregated and spherulitic fibrillar aggregates. Thus, the classification of Aβ binding property on lipid membranes appeared to be related to the fibrillogenesis with a certain morphology.
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Affiliation(s)
- Toshinori Shimanouchi
- Graduate School of Environment and Life Science, Okayama University, 3-1-1 Tsushimanaka, kita-ku, Okayama 700-8530, Japan.
| | - Miki Iwamura
- Graduate School of Environment and Life Science, Okayama University, 3-1-1 Tsushimanaka, kita-ku, Okayama 700-8530, Japan
| | - Yasuhiro Sano
- Graduate School of Environment and Life Science, Okayama University, 3-1-1 Tsushimanaka, kita-ku, Okayama 700-8530, Japan
| | - Keita Hayashi
- National Institute of Technology, Nara College, 22 Yada-cho, Yamatokoriyama, Nara, Japan
| | - Minoru Noda
- Graduate School of Science and Technology, Kyoto Institute of Technology, Sakyo-ku, Kyoto, Japan
| | - Yukitaka Kimura
- Graduate School of Environment and Life Science, Okayama University, 3-1-1 Tsushimanaka, kita-ku, Okayama 700-8530, Japan
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2
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Nagle JF. Understanding the phase behavior of a protobiomembrane. Phys Rev E 2023; 107:064408. [PMID: 37464660 DOI: 10.1103/physreve.107.064408] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 06/13/2023] [Indexed: 07/20/2023]
Abstract
The rich thermotropic behavior of lipid bilayers is addressed using phenomenological theory informed by many experiments. The most recent experiment not yet addressed by theory has shown that the tilt modulus in DMPC lipid bilayers decreases dramatically as the temperature is lowered toward the main transition temperature T_{M}. It is shown that this behavior can be understood by introducing a simple free energy functional for tilt that couples to the area per molecule. This is combined with a chain melting free energy functional in which the area is the primary order parameter that is the driver of the main transition. Satisfactory agreement with experiment is achieved with values of the model parameters determined by experiments, but the transition is directly into the gel phase. The theory is then extended to include the enigmatic ripple phase by making contact with the most recent experimentally determined ripple structure.
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Affiliation(s)
- John F Nagle
- Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA
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3
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Cai Y. Tilt Modulus of Bilayer Membranes Self-Assembled from Rod-Coil Diblock Copolymers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:5820-5828. [PMID: 35437996 DOI: 10.1021/acs.langmuir.2c00427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Quantitatively understanding membrane fission and fusion requires a mathematical model taking their underlying elastic degrees of freedom, such as the molecule's tilt, into account. Hamm-Kozlov's model is such a framework that includes a tilt modulus along with the bending modulus and Gaussian modulus. This paper investigates the tilt modulus of liquid-crystalline bilayer membranes by applying self-consistent field theory. Unlike the widely used method in molecular dynamics simulation which extracts the tilt modulus by simulating bilayer buckles with various single modes, we introduce a tilt constrain term in the free energy to stabilize bilayers with various tilt angles. Fitting the energy curve as a function of the tilt angle to Hamm-Kozlov's elastic energy allows us to extract the tilt modulus directly. Based on this novel scheme and focused on the bilayers self-assembled from rod-coil diblock copolymers, we carry out a systematic study of the dependence of the tensionless A-phase bilayer's tilt modulus on the microscopic parameters.
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Affiliation(s)
- Yongqiang Cai
- School of Mathematical Sciences, Laboratory of Mathematics and Complex Systems, MOE, Beijing Normal University, 100875 Beijing, China
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4
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Khadka NK, Mortimer MF, Marosvari M, Timsina R, Mainali L. Membrane elasticity modulated by cholesterol in model of porcine eye lens-lipid membrane. Exp Eye Res 2022; 220:109131. [PMID: 35636489 PMCID: PMC10131281 DOI: 10.1016/j.exer.2022.109131] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 05/08/2022] [Accepted: 05/22/2022] [Indexed: 11/29/2022]
Abstract
Experimental evidence shows that the eye lens loses its elasticity dramatically with age. It has also been reported that the cholesterol (Chol) content in the eye lens fiber cell plasma membrane increases significantly with age. High Chol content leads to the formation of cholesterol bilayer domains (CBDs) in the lens membrane. The role of high Chol associated with lens elasticity is unclear. The purpose of this research is to investigate the membrane elasticity of the model of porcine lens-lipid (MPLL) membrane with increasing Chol content to elucidate the role of high Chol in lens membrane elasticity. In this study, we used atomic force microscopy (AFM) to study the mechanical properties (breakthrough force and area compressibility modulus (KA)) of the MPLL membrane with increasing Chol content where KA is the measure of membrane elasticity. We varied Chol concentration in Chol/MPLL membrane from 0 to ∼71 mol%. Supported Chol/MPLL membranes were prepared by fusion of small unilamellar vesicles (SUVs) on top of a flat mica surface. SUVs of the Chol/MPLL lipid mixture were prepared with the rapid solvent exchange method followed by probe-tip sonication. For the Chol/MPLL mixing ratio of 0, AFM image showed the formation of two distinct phases of the membrane, i.e., liquid-disordered phase (ld) and solid-ordered phase (so) membrane. However, with Chol/MPLL mixing ratio of 0.5 and above, only liquid-ordered phase (lo) membrane was formed. Also, two distinct breakthrough forces corresponding to ld and so were observed for Chol/MPLL mixing ratio of 0, whereas only one breakthrough force was observed for membranes with Chol/MPLL mixing ratio of 0.5 and above. No significant difference in the membrane surface roughness was measured with increasing Chol content for these membranes; however, breakthrough force and KA for lo membrane increased when Chol/MPLL mixing ratio was increased from 0.5 to 1. Interestingly above the Chol/MPLL mixing ratio of 1, both breakthrough force and KA decreased, indicating the formation of CBDs. Furthermore, these results showed that membrane elasticity increases at high Chol content, suggesting that high Chol content in lens membrane might be responsible for maintaining lens membrane elasticity.
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Affiliation(s)
- Nawal K Khadka
- Department of Physics, Boise State University, Boise, ID, USA
| | | | - Mason Marosvari
- Department of Physics, Boise State University, Boise, ID, USA
| | - Raju Timsina
- Department of Physics, Boise State University, Boise, ID, USA
| | - Laxman Mainali
- Department of Physics, Boise State University, Boise, ID, USA; Biomolecular Sciences Graduate Program, Boise State University, Boise, ID, USA.
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Kelley EG, Butler PD, Ashkar R, Bradbury R, Nagao M. Scaling relationships for the elastic moduli and viscosity of mixed lipid membranes. Proc Natl Acad Sci U S A 2020; 117:23365-23373. [PMID: 32883879 PMCID: PMC7519290 DOI: 10.1073/pnas.2008789117] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The elastic and viscous properties of biological membranes play a vital role in controlling cell functions that require local reorganization of the membrane components as well as dramatic shape changes such as endocytosis, vesicular trafficking, and cell division. These properties are widely acknowledged to depend on the unique composition of lipids within the membrane, yet the effects of lipid mixing on the membrane biophysical properties remain poorly understood. Here, we present a comprehensive characterization of the structural, elastic, and viscous properties of fluid membranes composed of binary mixtures of lipids with different tail lengths. We show that the mixed lipid membrane properties are not simply additive quantities of the single-component analogs. Instead, the mixed membranes are more dynamic than either of their constituents, quantified as a decrease in their bending modulus, area compressibility modulus, and viscosity. While the enhanced dynamics are seemingly unexpected, we show that the measured moduli and viscosity for both the mixed and single-component bilayers all scale with the area per lipid and collapse onto respective master curves. This scaling links the increase in dynamics to mixing-induced changes in the lipid packing and membrane structure. More importantly, the results show that the membrane properties can be manipulated through lipid composition the same way bimodal blends of surfactants, liquid crystals, and polymers are used to engineer the mechanical properties of soft materials, with broad implications for understanding how lipid diversity relates to biomembrane function.
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Affiliation(s)
- Elizabeth G Kelley
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899;
| | - Paul D Butler
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE 19716
- Department of Chemistry, The University of Tennessee, Knoxville, TN 37996
| | - Rana Ashkar
- Physics Department, Virginia Tech, Blacksburg, VA 20461
- Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 20461
| | - Robert Bradbury
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899
- Center for Exploration of Energy and Matter, Indiana University, Bloomington, IN 47408
| | - Michihiro Nagao
- Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899
- Center for Exploration of Energy and Matter, Indiana University, Bloomington, IN 47408
- Department of Physics and Astronomy, University of Delaware, Newark, DE 19716
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Terzi MM, Deserno M, Nagle JF. Mechanical properties of lipid bilayers: a note on the Poisson ratio. SOFT MATTER 2019; 15:9085-9092. [PMID: 31657434 DOI: 10.1039/c9sm01290g] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
We investigate the Poisson ratio ν of fluid lipid bilayers, i.e., the question how area strains compare to the changes in membrane thickness (or, equivalently, volume) that accompany them. We first examine existing experimental results on the area- and volume compressibility of lipid membranes. Analyzing them within the framework of linear elasticity theory for homogeneous thin fluid sheets leads us to conclude that lipid membrane deformations are to a very good approximation volume-preserving, with a Poisson ratio that is likely about 3% smaller than the common soft matter limit . These results are fully consistent with atomistic simulations of a DOPC membrane at varying amount of applied lateral stress, for which we instead deduce ν by directly comparing area- and volume strains. To assess the problematic assumption of transverse homogeneity, we also define a depth-resolved Poisson ratio ν(z) and determine it through a refined analysis of the same set of simulations. We find that throughout the membrane's thickness, ν(z) is close to the value derived assuming homogeneity, with only minor variations of borderline statistical significance.
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Affiliation(s)
- M Mert Terzi
- Department of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
| | - Markus Deserno
- Department of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
| | - John F Nagle
- Department of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
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7
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Kirsch SA, Böckmann RA. Coupling of Membrane Nanodomain Formation and Enhanced Electroporation near Phase Transition. Biophys J 2019; 116:2131-2148. [PMID: 31103234 PMCID: PMC6554532 DOI: 10.1016/j.bpj.2019.04.024] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 04/17/2019] [Accepted: 04/18/2019] [Indexed: 12/29/2022] Open
Abstract
Biological cells are enveloped by a heterogeneous lipid bilayer that prevents the uncontrolled exchange of substances between the cell interior and its environment. In particular, membranes act as a continuous barrier for salt and macromolecules to ensure proper physiological functions within the cell. However, it has been shown that membrane permeability strongly depends on temperature and, for phospholipid bilayers, displays a maximum at the transition between the gel and fluid phase. Here, extensive molecular dynamics simulations of dipalmitoylphosphatidylcholine bilayers were employed to characterize the membrane structure and dynamics close to phase transition, as well as its stability with respect to an external electric field. Atomistic simulations revealed the dynamic appearance and disappearance of spatially related nanometer-sized thick ordered and thin interdigitating domains in a fluid-like bilayer close to the phase transition temperature (Tm). These structures likely represent metastable precursors of the ripple phase that vanished at increased temperatures. Similarly, a two-phase bilayer with coexisting gel and fluid domains featured a thickness minimum at the interface because of splaying and interdigitating lipids. For all systems, application of an external electric field revealed a reduced bilayer stability with respect to pore formation for temperatures close to Tm. Pore formation occurred exclusively in thin interdigitating membrane nanodomains. These findings provide a link between the increased membrane permeability and the structural heterogeneity close to phase transition.
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Affiliation(s)
- Sonja A Kirsch
- Computational Biology, Friedrich-Alexander University of Erlangen-Nürnberg, Erlangen, Germany
| | - Rainer A Böckmann
- Computational Biology, Friedrich-Alexander University of Erlangen-Nürnberg, Erlangen, Germany.
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8
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Ishak KA, Zahid NI, Velayutham TS, Annuar MSM, Hashim R. Effects of lipid packing and intermolecular hydrogen bond on thermotropic phase transition of stearyl glucoside. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.02.075] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Nagle JF, Venable RM, Maroclo-Kemmerling E, Tristram-Nagle S, Harper PE, Pastor RW. Revisiting Volumes of Lipid Components in Bilayers. J Phys Chem B 2019; 123:2697-2709. [PMID: 30836006 DOI: 10.1021/acs.jpcb.8b12010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In addition to obtaining the highly precise volumes of lipids in lipid bilayers, it has been desirable to obtain the volumes of parts of each lipid, such as the methylenes and terminal methyls on the hydrocarbon chains and the head group. Obtaining such component volumes from experiment and from simulations is re-examined, first by distinguishing methods based on apparent versus partial molar volumes. Although somewhat different, both these methods give results that are counterintuitive and that differ from results obtained by a more local method that can only be applied to simulations. These comparisons reveal differences in the average methylene component volume that result in larger differences in the head group component volumes. Literature experimental volume data for unsaturated phosphocholines and for alkanes have been used and new data have been acquired for saturated phosphocholines. Data and simulations cover extended ranges of temperature to assess both the temperature and chain length dependence of the component volumes. A new method to refine the determination of component volumes is proposed that uses experimental data for different chain lengths at temperatures guided by the temperature dependence determined in simulations. These refinements enable more precise comparisons of the component volumes of different lipids and alkanes in different phases. Finally, the notion of free volume is extended to components using the Lennard-Jones radii to estimate the excluded volume of each component. This analysis reveals that head group free volumes are relatively independent of thermodynamic phase, whereas both the methylene and methyl free volumes increase dramatically when bilayers transition from gel to fluid.
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Affiliation(s)
- John F Nagle
- Department of Physics , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Richard M Venable
- Laboratory of Computational Biology , National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda , Maryland 20892 , United States
| | | | - Stephanie Tristram-Nagle
- Department of Physics , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Paul E Harper
- Department of Physics & Astronomy , Calvin College , Grand Rapids , Michigan 49546 , United States
| | - Richard W Pastor
- Laboratory of Computational Biology , National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda , Maryland 20892 , United States
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10
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Mallikarjunaiah KJ, Kinnun JJ, Petrache HI, Brown MF. Flexible lipid nanomaterials studied by NMR spectroscopy. Phys Chem Chem Phys 2019; 21:18422-18457. [DOI: 10.1039/c8cp06179c] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Advances in solid-state nuclear magnetic resonance spectroscopy inform the emergence of material properties from atomistic-level interactions in membrane lipid nanostructures.
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Affiliation(s)
- K. J. Mallikarjunaiah
- Department of Chemistry and Biochemistry
- University of Arizona
- Tucson
- USA
- Department of Physics
| | - Jacob J. Kinnun
- Department of Physics
- Indiana University-Purdue University
- Indianapolis
- USA
| | - Horia I. Petrache
- Department of Physics
- Indiana University-Purdue University
- Indianapolis
- USA
| | - Michael F. Brown
- Department of Chemistry and Biochemistry
- University of Arizona
- Tucson
- USA
- Department of Physics
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11
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Allolio C, Haluts A, Harries D. A local instantaneous surface method for extracting membrane elastic moduli from simulation: Comparison with other strategies. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.03.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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12
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Abstract
This review summarizes over a decade of investigations into how membrane-binding proteins from the HIV-1 virus interact with lipid membrane mimics various HIV and host T-cell membranes. The goal of the work was to characterize at the molecular level both the elastic and structural changes that occur due to HIV protein/membrane interactions, which could lead to new drugs to thwart the HIV virus. The main technique used to study these interactions is diffuse X-ray scattering, which yields the bending modulus, KC, as well as structural parameters such as membrane thickness, area/lipid and position of HIV peptides (parts of HIV proteins) in the membrane. Our methods also yield information about lipid chain order or disorder caused by the peptides. This review focuses on three stages of the HIV-1 life cycle: 1) infection, 2) Tat membrane transport, and 3) budding. In the infection stage, our lab studied three different parts of HIV-1 gp41 (glycoprotein 41 fusion protein): 1) FP23, the N-terminal 23 amino acids that interact non-specifically with the T-cell host membrane to cause fusion of two membranes, and its trimer version, 2) CRAC (cholesterol recognition amino acid consensus sequence), on the MPER (membrane proximal external region) near the membrane-spanning domain, and 3) LLP2 (lentiviral lytic peptide 2) on the CTT (cytoplasmic C-terminal tail). For Tat transport, we used membrane mimics of the T-cell nuclear membrane as well as simpler models that varied charge and negative curvature. For membrane budding, we varied the myristoylation of the MA31 peptide as well as the negatively charged lipid. These studies show that HIV peptides with different roles in the HIV life cycle affect differently the relevant membrane mimics. In addition, the membrane lipid composition plays an important role in the peptides' effects.
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