Slowdown of surface diffusion during early stages of bacterial colonization

Phototactic microswimmers in pulsatile flow: Toward a novel harvesting method

Phototactic behavior is coupled with pulsatile flow features to reveal the advantages of pulsation for separating motile algae cells in a double Y-microchannel. The underlying mechanism is as follows: during half of the pulsation cycle, when the flow rate is low, the phototactic microswimmers are mainly redirected by the external stimulation (light); while, during the rest of the cycle, the flow effects become dominant and the microswimmers are driven toward the desired outlet. The results show that in the absence of light source, the pulsatile flow has no advantage over the steady flow for separation, and the microswimmers have no preference between the exit channels; the separation index (SI) is around 50%. However, when the light is on, SI increases to 65% and 75% in the steady and pulsatile flows, respectively. Although the experiments are conducted on the well-known model alga, Chlamydomonas reinhardtii, a numerical simulation based on a simple model demonstrates that the idea can be extended to other active particles stimulated by an attractive or repulsive external field. Thus, the potential applications can go beyond algae harvesting to the control and enhancement of separation processes without using any mechanical component or chemical substance.

Cyanobacteria: Model Microorganisms and Beyond

In this review, the general background is provided on cyanobacteria, including morphology, cell membrane structure, and their photosynthesis pathway. The presence of cyanobacteria in nature, and their industrial applications are discussed, and their production of secondary metabolites are explained. Biofilm formation, as a common feature of microorganisms, is detailed and the role of cell diffusion in bacterial colonization is described. Then, the discussion is narrowed down to cyanobacterium Synechocystis, as a lab model microorganism. In this relation, the morphology of Synechocystis is discussed and its different elements are detailed. Type IV pili, the complex multi-protein apparatus for motility and cell-cell adhesion in Synechocystis is described and the underlying function of its different elements is detailed. The phototaxis behavior of the cells, in response to homogenous or directional illumination, is reported and its relation to the run and tumble statistics of the cells is emphasized. In Synechocystis suspensions, there may exist a reciprocal interaction between the cell and the carrying fluid. The effects of shear flow on the growth, doubling per day, biomass production, pigments, and lipid production of Synechocystis are reported. Reciprocally, the effects of Synechocystis presence and its motility on the rheological properties of cell suspensions are addressed. This review only takes up the general grounds of cyanobacteria and does not get into the detailed biological aspects per se. Thus, it is substantially more comprehensive in that sense than other reviews that have been published in the last two decades. It is also written not only for the researchers in the field, but for those in physics and engineering, who may find it interesting, useful, and related to their own research.

Clustering of bacteria with heterogeneous motility

We study the clustering of a model cyanobacterium Synechocystis into microcolonies. The bacteria are allowed to diffuse onto surfaces of different hardness and interact with the others by aggregation and detachment. We find that soft surfaces give rise to more microcolonies than hard ones. This effect is related to the amount of heterogeneity of bacteria's dynamics as given by the proportion of motile cells. A kinetic model that emphasizes specific interactions between cells, complemented by extensive numerical simulations considering various amounts of motility, describes the experimental results adequately. The high proportion of motile cells enhances dispersion rather than aggregation.