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Awender S, Wackerbauer R, Breed GA. How realistic features affect the stability of an Arctic marine food web model. CHAOS (WOODBURY, N.Y.) 2024; 34:013122. [PMID: 38242104 DOI: 10.1063/5.0176718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 12/14/2023] [Indexed: 01/21/2024]
Abstract
Rapid sea-ice decline and warmer waters are threatening the stability of Arctic ecosystems and potentially forcing their restructuring. Mathematical models that support observational evidence are becoming increasingly important. We develop a food web model for the Southern Beaufort Sea based on species with high ecological significance. Generalized modeling is applied to study the impact of realistic characteristics on food web stability; a powerful method that provides a linear stability analysis for systems with uncertainty in data and underlying physical processes. We find that including predator-specific foraging traits, weighted predator-prey interactions, and habitat constraints increase food-web stability. The absence of a fierce top predator (killer whale, polar bear, etc.) also significantly increases the portion of stable webs. Adding ecosystem background noise in terms of a collective impact of latent, minor ecosystem members shows a peak in stability at an optimum, relatively small background pressure. These results indicate that refining models with more realistic detail to account for the complexity of the ecological system may be key to bridge the gap between empirical observations and model predictions in ecosystem stability.
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Affiliation(s)
- Stefan Awender
- Department of Physics, University of Alaska Fairbanks, Fairbanks, Alaska 99775, USA
| | - Renate Wackerbauer
- Department of Physics, University of Alaska Fairbanks, Fairbanks, Alaska 99775, USA
| | - Greg A Breed
- Department of Biology & Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska 99775, USA
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2
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Agranov T, Bunin G. Extinctions of coupled populations, and rare event dynamics under non-Gaussian noise. Phys Rev E 2021; 104:024106. [PMID: 34525629 DOI: 10.1103/physreve.104.024106] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 07/15/2021] [Indexed: 11/07/2022]
Abstract
The survival of natural populations may be greatly affected by environmental conditions that vary in space and time. We look at a population residing in two locations (patches) coupled by migration, in which the local conditions fluctuate in time. We report on two findings. First, we find that, unlike rare events in many other systems, here the histories leading to a rare extinction event are not dominated by a single path. We develop the appropriate framework, which turns out to be a hybrid of the standard saddle-point method, and the Donsker-Varadhan formalism which treats rare events of atypical averages over a long time. It provides a detailed description of the statistics of histories leading to the rare event and the mean time to extinction. The framework applies to rare events in a broad class of systems driven by non-Gaussian noise. Second, applying this framework to the population-dynamics model, we find a phase transition in its extinction behavior. Strikingly, a patch which is a sink (where individuals die more than are born) can nonetheless reduce the probability of extinction, even if it lowers the average population's size and growth rate.
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Affiliation(s)
- Tal Agranov
- Department of Physics, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Guy Bunin
- Department of Physics, Technion-Israel Institute of Technology, Haifa 3200003, Israel
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3
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Gera T, Sebastian KL. Solution to the Kramers barrier crossing problem caused by two noises: Thermal noise and Poisson white noise. J Chem Phys 2021; 155:014902. [PMID: 34241384 DOI: 10.1063/5.0056506] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We consider the escape of a particle trapped in a metastable potential well and acted upon by two noises. One of the noises is thermal and the other is Poisson white noise, which is non-Gaussian. Using path integral techniques, we find an analytic solution to this generalization of the classic Kramers barrier crossing problem. Using the "barrier climbing" path, we calculate the activation exponent. We also derive an approximate expression for the prefactor. The calculated results are compared with the simulations, and a good agreement between the two is found. Our results show that, unlike in the case of thermal noise, the rate depends not just on the barrier height but also on the shape of the whole barrier. A comparison between the simulations and the theory also shows that a better approximation for the prefactor is needed for agreement for all values of the parameters.
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Affiliation(s)
- Tarun Gera
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
| | - K L Sebastian
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
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4
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Nakamura GM, Martinez AS. Hamiltonian dynamics of the SIS epidemic model with stochastic fluctuations. Sci Rep 2019; 9:15841. [PMID: 31676857 PMCID: PMC6825157 DOI: 10.1038/s41598-019-52351-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Accepted: 10/11/2019] [Indexed: 12/03/2022] Open
Abstract
Empirical records of epidemics reveal that fluctuations are important factors for the spread and prevalence of infectious diseases. The exact manner in which fluctuations affect spreading dynamics remains poorly known. Recent analytical and numerical studies have demonstrated that improved differential equations for mean and variance of infected individuals reproduce certain regimes of the SIS epidemic model. Here, we show they form a dynamical system that follows Hamilton’s equations, which allow us to understand the role of fluctuations and their effects on epidemics. Our findings show the Hamiltonian is a constant of motion for large population sizes. For small populations, finite size effects break the temporal symmetry and induce a power-law decay of the Hamiltonian near the outbreak onset, with a parameter-free exponent. Away from the onset, the Hamiltonian decays exponentially according to a constant relaxation time, which we propose as a metric when fluctuations cannot be neglected.
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Affiliation(s)
- Gilberto M Nakamura
- Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo, Avenida Bandeirantes 3900, 14040-901, Ribeirão Preto, Brazil. .,Instituto Nacional de Ciência e Tecnologia - Sistemas Complexos (INCT-SC), 22460-320, Rio de Janeiro, Brazil. .,Laboratoire d'Imagerie et Modélisation en Neurobiologie et Cancérologie (IMNC), Centre National de la Recherche Scientifique (CNRS), UMR 8165, Universités Paris 11 and Paris 7, Campus d'Orsay, 91405, Orsay, France.
| | - Alexandre S Martinez
- Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo, Avenida Bandeirantes 3900, 14040-901, Ribeirão Preto, Brazil.,Instituto Nacional de Ciência e Tecnologia - Sistemas Complexos (INCT-SC), 22460-320, Rio de Janeiro, Brazil
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Valenti D, Fazio G, Spagnolo B. Stabilizing effect of volatility in financial markets. Phys Rev E 2018; 97:062307. [PMID: 30011541 DOI: 10.1103/physreve.97.062307] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Indexed: 11/07/2022]
Abstract
In financial markets, greater volatility is usually considered to be synonymous with greater risk and instability. However, large market downturns and upturns are often preceded by long periods where price returns exhibit only small fluctuations. To investigate this surprising feature, here we propose using the mean first hitting time, i.e., the average time a stock return takes to undergo for the first time a large negative (crashes) or positive variation (rallies), as an indicator of price stability, and relate this to a standard measure of volatility. In an empirical analysis of daily returns for 1071 stocks traded in the New York Stock Exchange, we find that this measure of stability displays nonmonotonic behavior, with a maximum, as a function of volatility. Also, we show that the statistical properties of the empirical data can be reproduced by a nonlinear Heston model. This analysis implies that, contrary to conventional wisdom, not only high, but also low volatility values can be associated with higher instability in financial markets. This proposed measure of stability can be extremely useful in risk control.
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Affiliation(s)
- Davide Valenti
- Dipartimento di Fisica e Chimica, Group of Interdisciplinary Theoretical Physics and CNISM, Università di Palermo, Viale delle Scienze, Edificio 18, I-90128 Palermo, Italy.,IBIM-CNR Istituto di Biomedicina ed Immunologia Molecolare "Alberto Monroy," Via Ugo La Malfa 153, I-90146 Palermo, Italy
| | - Giorgio Fazio
- Business School, Newcastle University, 5 Barrack Road, NE1 4SE Newcastle upon Tyne, United Kingdom.,SEAS, Università di Palermo, I-90128 Palermo, Italy
| | - Bernardo Spagnolo
- Dipartimento di Fisica e Chimica, Group of Interdisciplinary Theoretical Physics and CNISM, Università di Palermo, Viale delle Scienze, Edificio 18, I-90128 Palermo, Italy.,Istituto Nazionale di Fisica Nucleare, Sezione di Catania, Via S. Sofia 64, I-90123 Catania, Italy.,Radiophysics Department, Lobachevsky State University of Nizhny Novgorod, 23 Gagarin Avenue, Nizhny Novgorod 603950, Russia
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Enhancing Metastability by Dissipation and Driving in an Asymmetric Bistable Quantum System. ENTROPY 2018; 20:e20040226. [PMID: 33265317 PMCID: PMC7512741 DOI: 10.3390/e20040226] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 03/01/2018] [Accepted: 03/23/2018] [Indexed: 12/19/2022]
Abstract
The stabilizing effect of quantum fluctuations on the escape process and the relaxation dynamics from a quantum metastable state are investigated. Specifically, the quantum dynamics of a multilevel bistable system coupled to a bosonic Ohmic thermal bath in strong dissipation regime is analyzed. The study is performed by a non-perturbative method based on the real-time path integral approach of the Feynman-Vernon influence functional. We consider a strongly asymmetric double well potential with and without a monochromatic external driving, and with an out-of-equilibrium initial condition. In the absence of driving we observe a nonmonotonic behavior of the escape time from the metastable region, as a function both of the system-bath coupling coefficient and the temperature. This indicates a stabilizing effect of the quantum fluctuations. In the presence of driving our findings indicate that, as the coupling coefficient γ increases, the escape time, initially controlled by the external driving, shows resonant peaks and dips, becoming frequency-independent for higher γ values. Moreover, the escape time from the metastable state displays a nonmonotonic behavior as a function of the temperature, the frequency of the driving, and the thermal-bath coupling, which indicates the presence of a quantum noise enhanced stability phenomenon. Finally, we investigate the role of different spectral densities, both in sub-Ohmic and super-Ohmic dissipation regime and for different cutoff frequencies, on the relaxation dynamics from the quantum metastable state. The results obtained indicate that, in the crossover dynamical regime characterized by damped intrawell oscillations and incoherent tunneling, the spectral properties of the thermal bath influence non-trivially the short time behavior and the time scales of the relaxation dynamics from the metastable state.
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Potential landscape of high dimensional nonlinear stochastic dynamics with large noise. Sci Rep 2017; 7:15762. [PMID: 29150680 PMCID: PMC5693902 DOI: 10.1038/s41598-017-15889-2] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2017] [Accepted: 10/02/2017] [Indexed: 12/14/2022] Open
Abstract
Quantifying stochastic processes is essential to understand many natural phenomena, particularly in biology, including the cell-fate decision in developmental processes as well as the genesis and progression of cancers. While various attempts have been made to construct potential landscape in high dimensional systems and to estimate transition rates, they are practically limited to the cases where either noise is small or detailed balance condition holds. A general and practical approach to investigate real-world nonequilibrium systems, which are typically high-dimensional and subject to large multiplicative noise and the breakdown of detailed balance, remains elusive. Here, we formulate a computational framework that can directly compute the relative probabilities between locally stable states of such systems based on a least action method, without the necessity of simulating the steady-state distribution. The method can be applied to systems with arbitrary noise intensities through A-type stochastic integration, which preserves the dynamical structure of the deterministic counterpart dynamics. We demonstrate our approach in a numerically accurate manner through solvable examples. We further apply the method to investigate the role of noise on tumor heterogeneity in a 38-dimensional network model for prostate cancer, and provide a new strategy on controlling cell populations by manipulating noise strength.
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Moyses HW, Bauer RO, Grosberg AY, Grier DG. Perturbative theory for Brownian vortexes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:062144. [PMID: 26172698 DOI: 10.1103/physreve.91.062144] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Indexed: 06/04/2023]
Abstract
Brownian vortexes are stochastic machines that use static nonconservative force fields to bias random thermal fluctuations into steadily circulating currents. The archetype for this class of systems is a colloidal sphere in an optical tweezer. Trapped near the focus of a strongly converging beam of light, the particle is displaced by random thermal kicks into the nonconservative part of the optical force field arising from radiation pressure, which then biases its diffusion. Assuming the particle remains localized within the trap, its time-averaged trajectory traces out a toroidal vortex. Unlike trivial Brownian vortexes, such as the biased Brownian pendulum, which circulate preferentially in the direction of the bias, the general Brownian vortex can change direction and even topology in response to temperature changes. Here we introduce a theory based on a perturbative expansion of the Fokker-Planck equation for weak nonconservative driving. The first-order solution takes the form of a modified Boltzmann relation and accounts for the rich phenomenology observed in experiments on micrometer-scale colloidal spheres in optical tweezers.
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Affiliation(s)
- Henrique W Moyses
- Department of Physics and Center for Soft Matter Research, New York University, New York, New York 10003, USA
| | - Ross O Bauer
- Department of Physics and Center for Soft Matter Research, New York University, New York, New York 10003, USA
| | - Alexander Y Grosberg
- Department of Physics and Center for Soft Matter Research, New York University, New York, New York 10003, USA
| | - David G Grier
- Department of Physics and Center for Soft Matter Research, New York University, New York, New York 10003, USA
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Cueto-Felgueroso L, Dentz M, Juanes R. Regime shifts in bistable water-stressed ecosystems due to amplification of stochastic rainfall patterns. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:052148. [PMID: 26066160 DOI: 10.1103/physreve.91.052148] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Indexed: 06/04/2023]
Abstract
We develop a framework that casts the point water-vegetation dynamics under stochastic rainfall forcing as a continuous-time random walk (CTRW), which yields an evolution equation for the joint probability density function (PDF) of soil-moisture and biomass. We find regime shifts in the steady-state PDF as a consequence of changes in the rainfall structure, which flips the relative strengths of the system attractors, even for the same mean precipitation. Through an effective potential, we quantify the impact of rainfall variability on ecosystem resilience and conclude that amplified rainfall regimes reduce the resilience of water-stressed ecosystems, even if the mean annual precipitation remains constant.
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Affiliation(s)
- Luis Cueto-Felgueroso
- Department of Hydraulics, Energy and the Environment, Technical University of Madrid (UPM), Spain
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Marco Dentz
- Spanish National Research Council (IDAEA-CSIC), Barcelona, Spain
| | - Ruben Juanes
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
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