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Sakaguchi H. Noise-induced excitation wave and its size distribution in coupled FitzHugh-Nagumo equations on a square lattice. Phys Rev E 2024; 109:044211. [PMID: 38755797 DOI: 10.1103/physreve.109.044211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 03/22/2024] [Indexed: 05/18/2024]
Abstract
There are various research topics such as stochastic resonance, coherent resonance, and neuroavalanche in excitable systems under external noises. We perform numerical simulation of coupled noisy FitzHugh-Nagumo equations on the square lattice. Excitation waves are generated most efficiently at an intermediate noise strength. The cluster size distributions obey a power-law-like distribution at a certain parameter range. However, we consider that this is not a self-organized critical phenomenon, partly because the exponent of the power law is not constant. We have studied the propagation of excitation waves in the coupled noisy FitzHugh-Nagumo equations with a one-dimensional pacemaker region and found that there is a phase-transition-like phenomenon from the short-range propagation to the whole-system propagation by changing the noise strength T. The power-law distribution is observed most clearly near the phase transition of the propagation of excitation waves in the coupled noisy FitzHugh-Nagumo equations without the one-dimensional pacemaker.
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Affiliation(s)
- Hidetsugu Sakaguchi
- Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
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2
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The Analysis of Mammalian Hearing Systems Supports the Hypothesis That Criticality Favors Neuronal Information Representation but Not Computation. ENTROPY 2022; 24:e24040540. [PMID: 35455203 PMCID: PMC9029204 DOI: 10.3390/e24040540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 03/25/2022] [Accepted: 04/10/2022] [Indexed: 11/17/2022]
Abstract
In the neighborhood of critical states, distinct materials exhibit the same physical behavior, expressed by common simple laws among measurable observables, hence rendering a more detailed analysis of the individual systems obsolete. It is a widespread view that critical states are fundamental to neuroscience and directly favor computation. We argue here that from an evolutionary point of view, critical points seem indeed to be a natural phenomenon. Using mammalian hearing as our example, we show, however, explicitly that criticality does not describe the proper computational process and thus is only indirectly related to the computation in neural systems.
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3
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Stoop R. Why Hearing Aids Fail and How to Solve This. FRONTIERS IN NETWORK PHYSIOLOGY 2022; 2:868470. [PMID: 36926095 PMCID: PMC10013008 DOI: 10.3389/fnetp.2022.868470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 03/14/2022] [Indexed: 11/13/2022]
Abstract
Hearing is one of the human's foremost sensors; being able to hear again after suffering from a hearing loss is a great achievement, under all circumstances. However, in the long run, users of present-day hearing aids and cochlear implants are generally only halfway satisfied with what the commercial side offers. We demonstrate here that this is due to the failure of a full integration of these devices into the human physiological circuitry. Important parts of the hearing network that remain unestablished are the efferent connections to the cochlea, which strongly affects the faculty of listening. The latter provides the base for coping with the so-called cocktail party problem, or for a full enjoyment of multi-instrumental musical plays. While nature clearly points at how this could be remedied, to achieve this technologically will require the use of advanced high-precision electrodes and high-precision surgery, as we outline here. Corresponding efforts must be pushed forward by coordinated efforts from the side of science, as the commercial players in the field of hearing aids cannot be expected to have a substantial interest in advancements into this direction.
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Affiliation(s)
- Ruedi Stoop
- Institute of Neuroinformatics, University and ETH of Zürich, Zurich, Switzerland
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4
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Vennettilli M, Erez A, Mugler A. Multicellular sensing at a feedback-induced critical point. Phys Rev E 2020; 102:052411. [PMID: 33327087 DOI: 10.1103/physreve.102.052411] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 10/06/2020] [Indexed: 11/07/2022]
Abstract
Feedback in sensory biochemical networks can give rise to bifurcations in cells' behavioral response. These bifurcations share many properties with thermodynamic critical points. Evidence suggests that biological systems may operate near these critical points, but the functional benefit of doing so remains poorly understood. Here we investigate a simple biochemical model with nonlinear feedback and multicellular communication to determine if criticality provides a functional benefit in terms of the ability to gain information about a stochastic chemical signal. We find that when signal fluctuations are slow, the mutual information between the signal and the intracellular readout is maximized at criticality, because the benefit of high signal susceptibility outweighs the detriment of high readout noise. When cells communicate, criticality gives rise to long-range correlations in readout molecule number among cells. Consequently, we find that communication increases the mutual information between a given cell's readout and the spatial average of the signal across the population. Finally, we find that both with and without communication, the sensory benefits of criticality compete with critical slowing down, such that the information rate, as opposed to the information itself, is minimized at the critical point. Our results reveal the costs and benefits of feedback-induced criticality for multicellular sensing.
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Affiliation(s)
- Michael Vennettilli
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Amir Erez
- Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA
- The Racah Institute of Physics, Hebrew University, Jerusalem 91904, Israel
| | - Andrew Mugler
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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5
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Kuśmierz Ł, Ogawa S, Toyoizumi T. Edge of Chaos and Avalanches in Neural Networks with Heavy-Tailed Synaptic Weight Distribution. PHYSICAL REVIEW LETTERS 2020; 125:028101. [PMID: 32701351 DOI: 10.1103/physrevlett.125.028101] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 03/03/2020] [Accepted: 05/26/2020] [Indexed: 06/11/2023]
Abstract
We propose an analytically tractable neural connectivity model with power-law distributed synaptic strengths. When threshold neurons with biologically plausible number of incoming connections are considered, our model features a continuous transition to chaos and can reproduce biologically relevant low activity levels and scale-free avalanches, i.e., bursts of activity with power-law distributions of sizes and lifetimes. In contrast, the Gaussian counterpart exhibits a discontinuous transition to chaos and thus cannot be poised near the edge of chaos. We validate our predictions in simulations of networks of binary as well as leaky integrate-and-fire neurons. Our results suggest that heavy-tailed synaptic distribution may form a weakly informative sparse-connectivity prior that can be useful in biological and artificial adaptive systems.
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Affiliation(s)
- Łukasz Kuśmierz
- Laboratory for Neural Computation and Adaptation, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Shun Ogawa
- Laboratory for Neural Computation and Adaptation, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Taro Toyoizumi
- Laboratory for Neural Computation and Adaptation, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Department of Mathematical Informatics, Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan
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6
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Held J, Lorimer T, Pomati F, Stoop R, Albert C. Second-order phase transition in phytoplankton trait dynamics. CHAOS (WOODBURY, N.Y.) 2020; 30:053109. [PMID: 32491890 DOI: 10.1063/1.5141755] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 04/13/2020] [Indexed: 06/11/2023]
Abstract
Key traits of unicellular species, such as cell size, often follow scale-free or self-similar distributions, hinting at the possibility of an underlying critical process. However, linking such empirical scaling laws to the critical regime of realistic individual-based model classes is difficult. Here, we reveal new empirical scaling evidence associated with a transition in the population and the chlorophyll dynamics of phytoplankton. We offer a possible explanation for these observations by deriving scaling laws in the vicinity of the critical point of a new universality class of non-local cell growth and division models. This "criticality hypothesis" can be tested through new scaling predictions derived for our model class, for the response of chlorophyll distributions to perturbations. The derived scaling laws may also be generalized to other cellular traits and environmental drivers relevant to phytoplankton ecology.
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Affiliation(s)
- Jenny Held
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Tom Lorimer
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Francesco Pomati
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Ruedi Stoop
- Institute of Neuroinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Carlo Albert
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
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7
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Marhl U, Gosak M. Proper spatial heterogeneities expand the regime of scale-free behavior in a lattice of excitable elements. Phys Rev E 2019; 100:062203. [PMID: 31962506 DOI: 10.1103/physreve.100.062203] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Indexed: 06/10/2023]
Abstract
Signatures of criticality, such as power law scaling of observables, have been empirically found in a plethora of real-life settings, including biological systems. The presence of critical states is believed to have many functional advantages and is associated with optimal operational abilities. Typically, critical dynamics arises in the proximity of phase transition points between absorbing disordered states (subcriticality) and ordered active regimes (supercriticality) and requires a high degree of fine tuning to emerge, which is unlikely to occur in real biological systems. In the present study we propose a rather simple, and biologically relevant mechanism that profoundly expands the critical-like region. In particular, by means of numerical simulation we show that incorporating spatial heterogeneities into the square lattice of map-based excitable oscillators broadens the parameter space in which the distribution of excitation wave sizes follows closely a power law. Most importantly, this behavior is only observed if the spatial profile exhibits intermediate-sized patches with similar excitability levels, whereas for large and small spatial clusters only marginal widening of the critical state is detected. Furthermore, it turned out that the presence of spatial disorder in general amplifies the size of excitation waves, whereby the relatively highest contributions are observed in the proximity of the critical point. We argue that the reported mechanism is of particular importance for excitable systems with local interactions between individual elements.
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Affiliation(s)
- Urban Marhl
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, SI-2000 Maribor, Slovenia
- Institute of Mathematics, Physics and Mechanics, Jadranska ulica 19, SI-1000 Ljubljana, Slovenia
| | - Marko Gosak
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, SI-2000 Maribor, Slovenia
- Institute of Physiology, Faculty of Medicine, University of Maribor, Taborska ulica 8, SI-2000 Maribor, Slovenia
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8
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Stožer A, Markovič R, Dolenšek J, Perc M, Marhl M, Slak Rupnik M, Gosak M. Heterogeneity and Delayed Activation as Hallmarks of Self-Organization and Criticality in Excitable Tissue. Front Physiol 2019; 10:869. [PMID: 31333504 PMCID: PMC6624746 DOI: 10.3389/fphys.2019.00869] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 06/21/2019] [Indexed: 12/14/2022] Open
Abstract
Self-organized critical dynamics is assumed to be an attractive mode of functioning for several real-life systems and entails an emergent activity in which the extent of observables follows a power-law distribution. The hallmarks of criticality have recently been observed in a plethora of biological systems, including beta cell populations within pancreatic islets of Langerhans. In the present study, we systematically explored the mechanisms that drive the critical and supercritical behavior in networks of coupled beta cells under different circumstances by means of experimental and computational approaches. Experimentally, we employed high-speed functional multicellular calcium imaging of fluorescently labeled acute mouse pancreas tissue slices to record calcium signals in a large number of beta cells simultaneously, and with a high spatiotemporal resolution. Our experimental results revealed that the cellular responses to stimulation with glucose are biphasic and glucose-dependent. Under physiological as well as under supraphysiological levels of stimulation, an initial activation phase was followed by a supercritical plateau phase with a high number of global intercellular calcium waves. However, the activation phase displayed fingerprints of critical behavior under lower stimulation levels, with a progressive recruitment of cells and a power-law distribution of calcium wave sizes. On the other hand, the activation phase provoked by pathophysiologically high glucose concentrations, differed considerably and was more rapid, less continuous, and supercritical. To gain a deeper insight into the experimentally observed complex dynamical patterns, we built up a phenomenological model of coupled excitable cells and explored empirically the model’s necessities that ensured a good overlap between computational and experimental results. It turned out that such a good agreement between experimental and computational findings was attained when both heterogeneous and stimulus-dependent time lags, variability in excitability levels, as well as a heterogeneous cell-cell coupling were included into the model. Most importantly, since our phenomenological approach involved only a few parameters, it naturally lends itself not only for determining key mechanisms of self-organized criticality at the tissue level, but also points out various features for comprehensive and realistic modeling of different excitable systems in nature.
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Affiliation(s)
- Andraž Stožer
- Faculty of Medicine, University of Maribor, Maribor, Slovenia
| | - Rene Markovič
- Faculty of Natural Sciences and Mathematics, University of Maribor, Maribor, Slovenia.,Faculty of Education, University of Maribor, Maribor, Slovenia.,Faculty of Energy Technology, University of Maribor, Krško, Slovenia
| | - Jurij Dolenšek
- Faculty of Medicine, University of Maribor, Maribor, Slovenia.,Faculty of Natural Sciences and Mathematics, University of Maribor, Maribor, Slovenia
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Maribor, Slovenia.,Center for Applied Mathematics and Theoretical Physics, University of Maribor, Maribor, Slovenia.,Complexity Science Hub Vienna, Vienna, Austria
| | - Marko Marhl
- Faculty of Medicine, University of Maribor, Maribor, Slovenia.,Faculty of Natural Sciences and Mathematics, University of Maribor, Maribor, Slovenia.,Faculty of Education, University of Maribor, Maribor, Slovenia
| | - Marjan Slak Rupnik
- Faculty of Medicine, University of Maribor, Maribor, Slovenia.,Institute of Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria.,Alma Mater Europaea - ECM, Maribor, Slovenia
| | - Marko Gosak
- Faculty of Medicine, University of Maribor, Maribor, Slovenia.,Faculty of Natural Sciences and Mathematics, University of Maribor, Maribor, Slovenia
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9
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Kanders K, Lorimer T, Gomez F, Stoop R. Frequency sensitivity in mammalian hearing from a fundamental nonlinear physics model of the inner ear. Sci Rep 2017; 7:9931. [PMID: 28855554 PMCID: PMC5577103 DOI: 10.1038/s41598-017-09854-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 08/01/2017] [Indexed: 11/09/2022] Open
Abstract
A dominant view holds that the outer and middle ear are the determining factors for the frequency dependence of mammalian hearing sensitivity, but this view has been challenged. In the ensuing debate, there has been a missing element regarding in what sense and to what degree the biophysics of the inner ear might contribute to this frequency dependence. Here, we show that a simple model of the inner ear based on fundamental physical principles, reproduces, alone, the experimentally observed frequency dependence of the hearing threshold. This provides direct cochlea modeling support of the possibility that the inner ear could have a substantial role in determining the frequency dependence of mammalian hearing.
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Affiliation(s)
- Karlis Kanders
- Institute of Neuroinformatics and Institute of Computational Science, University and ETH Zürich Irchel Campus, Winterthurerstr. 190, 8057, Zürich, Switzerland
| | - Tom Lorimer
- Institute of Neuroinformatics and Institute of Computational Science, University and ETH Zürich Irchel Campus, Winterthurerstr. 190, 8057, Zürich, Switzerland
| | - Florian Gomez
- Institute of Neuroinformatics and Institute of Computational Science, University and ETH Zürich Irchel Campus, Winterthurerstr. 190, 8057, Zürich, Switzerland
| | - Ruedi Stoop
- Institute of Neuroinformatics and Institute of Computational Science, University and ETH Zürich Irchel Campus, Winterthurerstr. 190, 8057, Zürich, Switzerland.
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10
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Kanders K, Lorimer T, Stoop R. Avalanche and edge-of-chaos criticality do not necessarily co-occur in neural networks. CHAOS (WOODBURY, N.Y.) 2017; 27:047408. [PMID: 28456175 DOI: 10.1063/1.4978998] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
There are indications that for optimizing neural computation, neural networks may operate at criticality. Previous approaches have used distinct fingerprints of criticality, leaving open the question whether the different notions would necessarily reflect different aspects of one and the same instance of criticality, or whether they could potentially refer to distinct instances of criticality. In this work, we choose avalanche criticality and edge-of-chaos criticality and demonstrate for a recurrent spiking neural network that avalanche criticality does not necessarily entrain dynamical edge-of-chaos criticality. This suggests that the different fingerprints may pertain to distinct phenomena.
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Affiliation(s)
- Karlis Kanders
- Institute of Neuroinformatics and Institute for Computational Science, University of Zurich and ETH Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland
| | - Tom Lorimer
- Institute of Neuroinformatics and Institute for Computational Science, University of Zurich and ETH Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland
| | - Ruedi Stoop
- Institute of Neuroinformatics and Institute for Computational Science, University of Zurich and ETH Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland
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