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Ranft J, Lindner B. Theory of the asynchronous state of structured rotator networks and its application to recurrent networks of excitatory and inhibitory units. Phys Rev E 2023; 107:044306. [PMID: 37198857 DOI: 10.1103/physreve.107.044306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 03/28/2023] [Indexed: 05/19/2023]
Abstract
Recurrently coupled oscillators that are sufficiently heterogeneous and/or randomly coupled can show an asynchronous activity in which there are no significant correlations among the units of the network. The asynchronous state can nevertheless exhibit a rich temporal correlation statistics that is generally difficult to capture theoretically. For randomly coupled rotator networks, it is possible to derive differential equations that determine the autocorrelation functions of the network noise and of the single elements in the network. So far, the theory has been restricted to statistically homogeneous networks, making it difficult to apply this framework to real-world networks, which are structured with respect to the properties of the single units and their connectivity. A particularly striking case are neural networks for which one has to distinguish between excitatory and inhibitory neurons, which drive their target neurons towards or away from the firing threshold. To take into account network structures like that, here we extend the theory for rotator networks to the case of multiple populations. Specifically, we derive a system of differential equations that govern the self-consistent autocorrelation functions of the network fluctuations in the respective populations. We then apply this general theory to the special but important case of recurrent networks of excitatory and inhibitory units in the balanced case and compare our theory to numerical simulations. We inspect the effect of the network structure on the noise statistics by comparing our results to the case of an equivalent homogeneous network devoid of internal structure. Our results show that structured connectivity and heterogeneity of the oscillator type can both enhance or reduce the overall strength of the generated network noise and shape its temporal correlations.
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Affiliation(s)
- Jonas Ranft
- Institut de Biologie de l'ENS, Ecole Normale Supérieure, CNRS, Inserm, Université PSL, 46 rue d'Ulm, 75005 Paris, France
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience, Berlin, Philippstraße 13, Haus 2, 10115 Berlin, Germany and Physics Department of Humboldt University Berlin, Newtonstraße 15, 12489 Berlin, Germany
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2
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Lindner B. Fluctuation-Dissipation Relations for Spiking Neurons. PHYSICAL REVIEW LETTERS 2022; 129:198101. [PMID: 36399734 DOI: 10.1103/physrevlett.129.198101] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 09/27/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Spontaneous fluctuations and stimulus response are essential features of neural functioning, but how they are connected is poorly understood. I derive fluctuation-dissipation relations (FDR) between the spontaneous spike and voltage correlations and the firing rate susceptibility for (i) the leaky integrate-and-fire (IF) model with white noise and (ii) an IF model with arbitrary voltage dependence, an adaptation current, and correlated noise. The FDRs can be used to derive thus far unknown statistics analytically [model (i)] or the otherwise inaccessible intrinsic noise statistics [model (ii)].
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Affiliation(s)
- Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Philippstraße 13, Haus 2, 10115 Berlin, Germany and Physics Department of Humboldt University Berlin, Newtonstraße 15, 12489 Berlin, Germany
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Ranft J, Lindner B. A self-consistent analytical theory for rotator networks under stochastic forcing: Effects of intrinsic noise and common input. CHAOS (WOODBURY, N.Y.) 2022; 32:063131. [PMID: 35778158 DOI: 10.1063/5.0096000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
Despite the incredible complexity of our brains' neural networks, theoretical descriptions of neural dynamics have led to profound insights into possible network states and dynamics. It remains challenging to develop theories that apply to spiking networks and thus allow one to characterize the dynamic properties of biologically more realistic networks. Here, we build on recent work by van Meegen and Lindner who have shown that "rotator networks," while considerably simpler than real spiking networks and, therefore, more amenable to mathematical analysis, still allow one to capture dynamical properties of networks of spiking neurons. This framework can be easily extended to the case where individual units receive uncorrelated stochastic input, which can be interpreted as intrinsic noise. However, the assumptions of the theory do not apply anymore when the input received by the single rotators is strongly correlated among units. As we show, in this case, the network fluctuations become significantly non-Gaussian, which calls for reworking of the theory. Using a cumulant expansion, we develop a self-consistent analytical theory that accounts for the observed non-Gaussian statistics. Our theory provides a starting point for further studies of more general network setups and information transmission properties of these networks.
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Affiliation(s)
- Jonas Ranft
- Institut de Biologie de l'ENS, Ecole Normale Supérieure, CNRS, Inserm, Université PSL, 46 rue d'Ulm, 75005 Paris, France
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Philippstraße 13, Haus 2, 10115 Berlin, Germany and Department of Physics, Humboldt University Berlin, Newtonstraße 15, 12489 Berlin, Germany
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Layer M, Senk J, Essink S, van Meegen A, Bos H, Helias M. NNMT: Mean-Field Based Analysis Tools for Neuronal Network Models. Front Neuroinform 2022; 16:835657. [PMID: 35712677 PMCID: PMC9196133 DOI: 10.3389/fninf.2022.835657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 03/17/2022] [Indexed: 11/13/2022] Open
Abstract
Mean-field theory of neuronal networks has led to numerous advances in our analytical and intuitive understanding of their dynamics during the past decades. In order to make mean-field based analysis tools more accessible, we implemented an extensible, easy-to-use open-source Python toolbox that collects a variety of mean-field methods for the leaky integrate-and-fire neuron model. The Neuronal Network Mean-field Toolbox (NNMT) in its current state allows for estimating properties of large neuronal networks, such as firing rates, power spectra, and dynamical stability in mean-field and linear response approximation, without running simulations. In this article, we describe how the toolbox is implemented, show how it is used to reproduce results of previous studies, and discuss different use-cases, such as parameter space explorations, or mapping different network models. Although the initial version of the toolbox focuses on methods for leaky integrate-and-fire neurons, its structure is designed to be open and extensible. It aims to provide a platform for collecting analytical methods for neuronal network model analysis, such that the neuroscientific community can take maximal advantage of them.
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Affiliation(s)
- Moritz Layer
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
- RWTH Aachen University, Aachen, Germany
| | - Johanna Senk
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
| | - Simon Essink
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
- RWTH Aachen University, Aachen, Germany
| | - Alexander van Meegen
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
- Institute of Zoology, Faculty of Mathematics and Natural Sciences, University of Cologne, Cologne, Germany
| | - Hannah Bos
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
| | - Moritz Helias
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany
- Department of Physics, Faculty 1, RWTH Aachen University, Aachen, Germany
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Knoll G, Lindner B. Information transmission in recurrent networks: Consequences of network noise for synchronous and asynchronous signal encoding. Phys Rev E 2022; 105:044411. [PMID: 35590546 DOI: 10.1103/physreve.105.044411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 03/04/2022] [Indexed: 06/15/2023]
Abstract
Information about natural time-dependent stimuli encoded by the sensory periphery or communication between cortical networks may span a large frequency range or be localized to a smaller frequency band. Biological systems have been shown to multiplex such disparate broadband and narrow-band signals and then discriminate them in later populations by employing either an integration (low-pass) or coincidence detection (bandpass) encoding strategy. Analytical expressions have been developed for both encoding methods in feedforward populations of uncoupled neurons and confirm that the integration of a population's output low-pass filters the information, whereas synchronous output encodes less information overall and retains signal information in a selected frequency band. The present study extends the theory to recurrent networks and shows that recurrence may sharpen the synchronous bandpass filter. The frequency of the pass band is significantly influenced by the synaptic strengths, especially for inhibition-dominated networks. Synchronous information transfer is also increased when network models take into account heterogeneity that arises from the stochastic distribution of the synaptic weights.
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Affiliation(s)
- Gregory Knoll
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, 10115 Berlin, Germany and Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489 Berlin, Germany
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, 10115 Berlin, Germany and Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489 Berlin, Germany
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van Meegen A, Kühn T, Helias M. Large-Deviation Approach to Random Recurrent Neuronal Networks: Parameter Inference and Fluctuation-Induced Transitions. PHYSICAL REVIEW LETTERS 2021; 127:158302. [PMID: 34678014 DOI: 10.1103/physrevlett.127.158302] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 07/05/2021] [Accepted: 08/19/2021] [Indexed: 06/13/2023]
Abstract
We here unify the field-theoretical approach to neuronal networks with large deviations theory. For a prototypical random recurrent network model with continuous-valued units, we show that the effective action is identical to the rate function and derive the latter using field theory. This rate function takes the form of a Kullback-Leibler divergence which enables data-driven inference of model parameters and calculation of fluctuations beyond mean-field theory. Lastly, we expose a regime with fluctuation-induced transitions between mean-field solutions.
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Affiliation(s)
- Alexander van Meegen
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, 52428 Jülich, Germany
- Institute of Zoology, University of Cologne, 50674 Cologne, Germany
| | - Tobias Kühn
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, 52428 Jülich, Germany
- Department of Physics, Faculty 1, RWTH Aachen University, 52074 Aachen, Germany
- Laboratoire de Physique de l'Ecole Normale Supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Moritz Helias
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, 52428 Jülich, Germany
- Department of Physics, Faculty 1, RWTH Aachen University, 52074 Aachen, Germany
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Knoll G, Lindner B. Recurrence-mediated suprathreshold stochastic resonance. J Comput Neurosci 2021; 49:407-418. [PMID: 34003421 PMCID: PMC8556192 DOI: 10.1007/s10827-021-00788-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 04/21/2021] [Accepted: 04/26/2021] [Indexed: 11/29/2022]
Abstract
It has previously been shown that the encoding of time-dependent signals by feedforward networks (FFNs) of processing units exhibits suprathreshold stochastic resonance (SSR), which is an optimal signal transmission for a finite level of independent, individual stochasticity in the single units. In this study, a recurrent spiking network is simulated to demonstrate that SSR can be also caused by network noise in place of intrinsic noise. The level of autonomously generated fluctuations in the network can be controlled by the strength of synapses, and hence the coding fraction (our measure of information transmission) exhibits a maximum as a function of the synaptic coupling strength. The presence of a coding peak at an optimal coupling strength is robust over a wide range of individual, network, and signal parameters, although the optimal strength and peak magnitude depend on the parameter being varied. We also perform control experiments with an FFN illustrating that the optimized coding fraction is due to the change in noise level and not from other effects entailed when changing the coupling strength. These results also indicate that the non-white (temporally correlated) network noise in general provides an extra boost to encoding performance compared to the FFN driven by intrinsic white noise fluctuations.
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Affiliation(s)
- Gregory Knoll
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, Berlin, 10115, Germany. .,Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489, Berlin, Germany.
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, Berlin, 10115, Germany.,Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489, Berlin, Germany
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Bernardi D, Doron G, Brecht M, Lindner B. A network model of the barrel cortex combined with a differentiator detector reproduces features of the behavioral response to single-neuron stimulation. PLoS Comput Biol 2021; 17:e1007831. [PMID: 33556070 PMCID: PMC7895413 DOI: 10.1371/journal.pcbi.1007831] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 02/19/2021] [Accepted: 01/17/2021] [Indexed: 11/23/2022] Open
Abstract
The stimulation of a single neuron in the rat somatosensory cortex can elicit a behavioral response. The probability of a behavioral response does not depend appreciably on the duration or intensity of a constant stimulation, whereas the response probability increases significantly upon injection of an irregular current. Biological mechanisms that can potentially suppress a constant input signal are present in the dynamics of both neurons and synapses and seem ideal candidates to explain these experimental findings. Here, we study a large network of integrate-and-fire neurons with several salient features of neuronal populations in the rat barrel cortex. The model includes cellular spike-frequency adaptation, experimentally constrained numbers and types of chemical synapses endowed with short-term plasticity, and gap junctions. Numerical simulations of this model indicate that cellular and synaptic adaptation mechanisms alone may not suffice to account for the experimental results if the local network activity is read out by an integrator. However, a circuit that approximates a differentiator can detect the single-cell stimulation with a reliability that barely depends on the length or intensity of the stimulus, but that increases when an irregular signal is used. This finding is in accordance with the experimental results obtained for the stimulation of a regularly-spiking excitatory cell. It is widely assumed that only a large group of neurons can encode a stimulus or control behavior. This tenet of neuroscience has been challenged by experiments in which stimulating a single cortical neuron has had a measurable effect on an animal’s behavior. Recently, theoretical studies have explored how a single-neuron stimulation could be detected in a large recurrent network. However, these studies missed essential biological mechanisms of cortical networks and are unable to explain more recent experiments in the barrel cortex. Here, to describe the stimulated brain area, we propose and study a network model endowed with many important biological features of the barrel cortex. Importantly, we also investigate different readout mechanisms, i.e. ways in which the stimulation effects can propagate to other brain areas. We show that a readout network which tracks rapid variations in the local network activity is in agreement with the experiments. Our model demonstrates a possible mechanism for how the stimulation of a single neuron translates into a signal at the population level, which is taken as a proxy of the animal’s response. Our results illustrate the power of spiking neural networks to properly describe the effects of a single neuron’s activity.
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Affiliation(s)
- Davide Bernardi
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
- Institut für Physik, Humboldt-Universität zu Berlin, Berlin, Germany
- Center for Translational Neurophysiology of Speech and Communication, Fondazione Istituto Italiano di Tecnologia, Ferrara, Italy
- * E-mail:
| | - Guy Doron
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Michael Brecht
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
- Institut für Physik, Humboldt-Universität zu Berlin, Berlin, Germany
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