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Kryuchkov NP, Nasyrov AD, Gursky KD, Yurchenko SO. Influence of anomalous agents on the dynamics of an active system. Phys Rev E 2024; 109:034601. [PMID: 38632726 DOI: 10.1103/physreve.109.034601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 01/25/2024] [Indexed: 04/19/2024]
Abstract
Swarming behavior in systems of self-propelled particles, whether biological or artificial, has received increased attention in recent years. Here, we show that even a small number of particles with anomalous behavior can change dramatically collective dynamics of the swarming system and can impose unusual behavior and transitions between dynamic states. Our results pave the way to practical approaches and concepts of multiagent dynamics in groups of flocking animals: birds, insects, and fish, i.e., active and living soft matter.
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Affiliation(s)
- Nikita P Kryuchkov
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Artur D Nasyrov
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Konstantin D Gursky
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Stanislav O Yurchenko
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
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2
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Horvath D, Slabý C, Tomori Z, Hovan A, Miskovsky P, Bánó G. Bouncing dynamics of inertial self-propelled particles reveals directional asymmetry. Phys Rev E 2023; 107:024603. [PMID: 36932604 DOI: 10.1103/physreve.107.024603] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
This study aims to examine experimental conditions in which active particles are forced by their surroundings to move forward and backward in a continuous oscillatory manner. The experimental design is based on using a vibrating self-propelled toyrobot called hexbug, which is placed inside a narrow channel closed on one end by a rigid moving wall. Using the end-wall velocity as a controlling factor, the main forward mode of the hexbug movement can be turned to mostly rearward mode. We investigate the bouncing hexbug motion on both experimental and theoretical grounds. The Brownian model of active particles with inertia is employed in the theoretical framework. The model itself uses a pulsed Langevin equation in order to simulate abrupt changes in velocity that mimic hexbug propulsion in the moments when its legs make contact with the base plate. Significant directional asymmetry is caused by the legs bending backward. We demonstrate that the simulation successfully reproduces the experimental characteristics of hexbug motion after regressing the spatial and temporal statistical characteristics, especially when directional asymmetry is under consideration.
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Affiliation(s)
- Denis Horvath
- Center for Interdisciplinary Biosciences, Technology and Innovation Park, P. J. Šafárik University in Košice, Jesenná 5, 041 54 Košice, Slovak Republic
| | - Cyril Slabý
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 041 54 Košice, Slovak Republic
| | - Zoltán Tomori
- Department of Biophysics, Institute of Experimental Physics SAS, Watsonova 47, 040 01 Košice, Slovak Republic
| | - Andrej Hovan
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 041 54 Košice, Slovak Republic
| | - Pavol Miskovsky
- Center for Interdisciplinary Biosciences, Technology and Innovation Park, P. J. Šafárik University in Košice, Jesenná 5, 041 54 Košice, Slovak Republic
| | - Gregor Bánó
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 041 54 Košice, Slovak Republic
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3
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Kuyyamudi C, Menon SN, Sinha S. Contact-mediated signaling enables disorder-driven transitions in cellular assemblies. Phys Rev E 2022; 106:L022401. [PMID: 36109907 DOI: 10.1103/physreve.106.l022401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 08/02/2022] [Indexed: 06/15/2023]
Abstract
We show that, when cells communicate by contact-mediated interactions, heterogeneity in cell shapes and sizes leads to qualitatively distinct collective behavior in the tissue. For intercellular coupling that implements lateral inhibition, such disorder-driven transitions can substantially alter the asymptotic pattern of differentiated cells by modulating their fate choice through changes in the neighborhood geometry. In addition, when contact-induced signals influence inherent cellular oscillations, disorder leads to the emergence of functionally relevant partially-ordered dynamical states.
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Affiliation(s)
- Chandrashekar Kuyyamudi
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400 094, India
| | - Shakti N Menon
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
| | - Sitabhra Sinha
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai 400 094, India
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4
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Olsen KS. Diffusion of active particles with angular velocity reversal. Phys Rev E 2021; 103:052608. [PMID: 34134289 DOI: 10.1103/physreve.103.052608] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 04/26/2021] [Indexed: 11/07/2022]
Abstract
Biological and synthetic microswimmers display a wide range of swimming trajectories depending on driving forces and torques. In this paper we consider a simple overdamped model of self-propelled particles with a constant self-propulsion speed but an angular velocity that varies in time. Specifically, we consider the case of both deterministic and stochastic angular velocity reversals, mimicking several synthetic active matter systems, such as propelled droplets. The orientational correlation function and effective diffusivity is studied using Langevin dynamics simulations and perturbative methods.
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Chen ZH, Wu ZX, Guan JY. Twofold effect of self-interest in pedestrian room evacuation. Phys Rev E 2021; 103:062305. [PMID: 34271713 DOI: 10.1103/physreve.103.062305] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 05/27/2021] [Indexed: 11/07/2022]
Abstract
Evacuation dynamics of pedestrians in a square room with one exit is studied. The movement of the pedestrians is guided by the static floor field model. Whenever multiple pedestrians are trying to move to the same target position, a game theoretical framework is introduced to address the conflict. Depending on the payoff matrix, the game that the pedestrians are involved in may be either hawk-dove or prisoner's dilemma, from which the reaped payoffs determine the capacities, or probabilities, of the pedestrians occupying the preferred vacant sites. The pedestrians are allowed to adjust their strategies when competing with others, and a parameter κ is utilized to characterize the extent of their self-interest. It is found that self-interest may induce either positive or negative impacts on the evacuation dynamics depending on whether it can facilitate the formation of collective cooperation in the population or not. Particularly, a resonance-like performance of evacuation is realized in the regime of prisoner's dilemma. The effects of placing an obstacle in front of the exit and the diversity of responses of the pedestrians to the space competition on the evacuation dynamics are also discussed.
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Affiliation(s)
- Ze-Hao Chen
- Institute of Computational Physics and Complex Systems, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Zhi-Xi Wu
- Institute of Computational Physics and Complex Systems, Lanzhou University, Lanzhou, Gansu 730000, China.,Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Jian-Yue Guan
- Institute of Computational Physics and Complex Systems, Lanzhou University, Lanzhou, Gansu 730000, China.,Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China
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Basak US, Sattari S, Hossain M, Horikawa K, Komatsuzaki T. Transfer entropy dependent on distance among agents in quantifying leader-follower relationships. Biophys Physicobiol 2021; 18:131-144. [PMID: 34178564 PMCID: PMC8214925 DOI: 10.2142/biophysico.bppb-v18.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 05/13/2021] [Indexed: 12/01/2022] Open
Abstract
Synchronized movement of (both unicellular and multicellular) systems can be observed almost everywhere. Understanding of how organisms are regulated to synchronized behavior is one of the challenging issues in the field of collective motion. It is hypothesized that one or a few agents in a group regulate(s) the dynamics of the whole collective, known as leader(s). The identification of the leader (influential) agent(s) is very crucial. This article reviews different mathematical models that represent different types of leadership. We focus on the improvement of the leader-follower classification problem. It was found using a simulation model that the use of interaction domain information significantly improves the leader-follower classification ability using both linear schemes and information-theoretic schemes for quantifying influence. This article also reviews different schemes that can be used to identify the interaction domain using the motion data of agents.
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Affiliation(s)
- Udoy S. Basak
- Graduate School of Life Science, Transdisciplinary Life Science Course, Hokkaido University, Sapporo, Hokkaido 060-0812, Japan
- Pabna University of Science and Technology, Pabna 6600, Bangladesh
| | - Sulimon Sattari
- Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido 001-0020, Japan
| | - Motaleb Hossain
- Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido 001-0020, Japan
- University of Dhaka, Dhaka 1000, Bangladesh
| | - Kazuki Horikawa
- Department of Optical Imaging, The Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima 770-8503, Japan
| | - Tamiki Komatsuzaki
- Graduate School of Life Science, Transdisciplinary Life Science Course, Hokkaido University, Sapporo, Hokkaido 060-0812, Japan
- Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido 001-0020, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Hokkaido 001-0021, Japan
- Graduate School of Chemical Sciences and Engineering Materials Chemistry and Engineering Course, Hokkaido University, Sapporo, Hokkaido 060-0812, Japan
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Mohapatra S, Mondal S, Mahapatra PS. Spatiotemporal dynamics of a self-propelled system with opposing alignment and repulsive forces. Phys Rev E 2020; 102:042613. [PMID: 33212711 DOI: 10.1103/physreve.102.042613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 10/05/2020] [Indexed: 11/07/2022]
Abstract
Effect of concurrent alignment and repulsion is studied in the purview of a confined active matter system using a modified force-based Vicsek model. On alteration of the alignment and the repulsive force parameters, a low alignment random phase, a midrange alignment milling phase, and a high alignment oscillatory phase are identified. Based on the particle aggregations, the milling phase is further classified into three subphases, two of which are spatial patterns: one consisting of compact ring-shaped mills and the other incorporating both rings and clusters. A correlation function based on the inner product of spatial velocity fluctuations of the particles shows a high correlation length for the ringed milling and the rings-clusters hybrid milling state. On analyzing temporal velocity fluctuations of particles through chaos detection techniques, low alignment and high alignment states are indicative of chaos, while the middle order alignment is symbolic of periodicity. The extent of synchronization of the particles' motion is analyzed through a Hilbert transform-based mean frequency approach, leading to the detection of a weak chimera state in the case of the spatial structures. The ringed milling state shows a unique category of weak chimera consisting of multiple oscillator groups showcasing different synchronization frequencies coexisting with desynchronized oscillators.
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Affiliation(s)
- Siddhant Mohapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
| | - Sirshendu Mondal
- Department of Mechanical Engineering, National Institute of Technology Durgapur, Kolkata 713209, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
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Basak US, Sattari S, Horikawa K, Komatsuzaki T. Inferring domain of interactions among particles from ensemble of trajectories. Phys Rev E 2020; 102:012404. [PMID: 32795064 DOI: 10.1103/physreve.102.012404] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 06/24/2020] [Indexed: 11/07/2022]
Abstract
An information-theoretic scheme is proposed to estimate the underlying domain of interactions and the timescale of the interactions for many-particle systems. The crux is the application of transfer entropy which measures the amount of information transferred from one variable to another, and the introduction of a "cutoff distance variable" which specifies the distance within which pairs of particles are taken into account in the estimation of transfer entropy. The Vicsek model often studied as a metaphor of collectively moving animals is employed with introducing asymmetric interactions and an interaction timescale. Based on ensemble data of trajectories of the model system, it is shown that using the interaction domain significantly improves the performance of classification of leaders and followers compared to the approach without utilizing knowledge of the domain. Given an interaction timescale estimated from an ensemble of trajectories, the first derivative of transfer entropy averaged over the ensemble with respect to the cutoff distance is presented to serve as an indicator to infer the interaction domain. It is shown that transfer entropy is superior for inferring the interaction radius compared to cross correlation, hence resulting in a higher performance for inferring the leader-follower relationship. The effects of noise size exerted from environment and the ratio of the numbers of leader and follower on the classification performance are also discussed.
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Affiliation(s)
- Udoy S Basak
- Graduate School of Life Science, Transdisciplinary Life Science Course, Hokkaido University, Kita 12, Nishi 6, Kita-ku, Sapporo 060-0812, Japan and Pabna University of Science and Technology, Pabna 6600, Bangladesh
| | - Sulimon Sattari
- Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science, Hokkaido University, Kita 20, Nishi 10, Kita-ku, Sapporo 001-0020, Japan
| | - Kazuki Horikawa
- Department of Optical Imaging, Institute of Biomedical Sciences, Tokushima University Graduate School, 3-18-15 Kuramoto-cho, Tokushima City, Tokushima 770-8503, Japan
| | - Tamiki Komatsuzaki
- Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science, Hokkaido University, Kita 20, Nishi 10, Kita-ku, Sapporo 001-0020, Japan; Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo 001-0021, Japan; Graduate School of Life Science, Transdisciplinary Life Science Course, Hokkaido University, Kita 12, Nishi 6, Kita-ku, Sapporo 060-0812, Japan; and Graduate School of Chemical Sciences and Engineering Materials, Chemistry and Engineering Course, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo 060-0812, Japan
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Das R, Kumar M, Mishra S. Nonquenched rotators ease flocking and memorize it. Phys Rev E 2020; 101:012607. [PMID: 32069681 DOI: 10.1103/physreve.101.012607] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Indexed: 02/03/2023]
Abstract
We introduce a minimal model for a two-dimensional polar flock with nonquenched rotators and show that the rotators make the usual macroscopic long-range order of the flock more robust than the clean system. The rotators memorize the flock-information which helps in establishing the robustness. Moreover, the memory of the rotators assists in probing the moving flock. We also formulate a hydrodynamic framework for the microscopic model that makes our study comprehensive. Using linearized hydrodynamics, it is shown that the presence of such nonquenched heterogeneities increases the sound speeds of the flock. The enhanced sound speeds lead to faster convection of information and consequently the robust ordering in the system. We argue that similar nonquenched heterogeneities may be useful in monitoring and controlling large crowds.
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Affiliation(s)
- Rakesh Das
- S N Bose National Centre for Basic Sciences, Block JD, Sector III, Salt Lake, Kolkata 700106, India
| | - Manoranjan Kumar
- S N Bose National Centre for Basic Sciences, Block JD, Sector III, Salt Lake, Kolkata 700106, India
| | - Shradha Mishra
- Department of Physics, Indian Institute of Technology (BHU), Varanasi 221005, India
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Mohapatra S, Mahapatra PS. Confined System Analysis of a Predator-Prey Minimalistic Model. Sci Rep 2019; 9:11258. [PMID: 31375724 PMCID: PMC6677773 DOI: 10.1038/s41598-019-47603-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 07/18/2019] [Indexed: 11/15/2022] Open
Abstract
In nature exists a properly defined food chain- an order of hunting and getting hunted. One such hunter-hunted pair is considered in this context and coordinated escape manoeuvres in response to predation is studied in case of a rarely examined confined system. Both the predator agent and prey agents are considered to be self-propelled particles moving in a viscous fluid. The state of motility when alive and passivity on death has been accounted for. A novel individual-based combination of Vicsek model and Boids flocking model is used for defining the self-propelling action and inter-agent interactions. The regimes observed at differing levels of co-ordination segregated by quantification of global order parameter are found to be in agreement with the extant literature. This study strives to understand the penalty on the collective motion due to the restraints employed by the rigid walls of the confinement and the predator’s hunting tactics. The success of any escape manoeuvre is dependent on the rate of information transfer and the strength of the agitation at the source of the manoeuvre. The rate of information transfer is studied as a function of co-ordination and the size of the influence zone and the source strength is studied as a function of escape acceleration activated on the agitated prey. The role of these factors in affecting survival rate of prey is given due coverage.
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Affiliation(s)
- Siddhant Mohapatra
- Department of Mechanical Engineering, National Institute of Technology Silchar, Silchar, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai, India.
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