Hidden Topological Structure of Flow Network Functionality

Learning to learn by using nonequilibrium training protocols for adaptable materials

Evolution in time-varying environments naturally leads to adaptable biological systems that can easily switch functionalities. Advances in the synthesis of environmentally responsive materials therefore open up the possibility of creating a wide range of synthetic materials which can also be trained for adaptability. We consider high-dimensional inverse problems for materials where any particular functionality can be realized by numerous equivalent choices of design parameters. By periodically switching targets in a given design algorithm, we can teach a material to perform incompatible functionalities with minimal changes in design parameters. We exhibit this learning strategy for adaptability in two simulated settings: elastic networks that are designed to switch deformation modes with minimal bond changes and heteropolymers whose folding pathway selections are controlled by a minimal set of monomer affinities. The resulting designs can reveal physical principles, such as nucleation-controlled folding, that enable such adaptability.

Local Dirac Synchronization on networks

We propose Local Dirac Synchronization that uses the Dirac operator to capture the dynamics of coupled nodes and link signals on an arbitrary network. In Local Dirac Synchronization, the harmonic modes of the dynamics oscillate freely while the other modes are interacting non-linearly, leading to a collectively synchronized state when the coupling constant of the model is increased. Local Dirac Synchronization is characterized by discontinuous transitions and the emergence of a rhythmic coherent phase. In this rhythmic phase, one of the two complex order parameters oscillates in the complex plane at a slow frequency (called emergent frequency) in the frame in which the intrinsic frequencies have zero average. Our theoretical results obtained within the annealed approximation are validated by extensive numerical results on fully connected networks and sparse Poisson and scale-free networks. Local Dirac Synchronization on both random and real networks, such as the connectome of Caenorhabditis Elegans, reveals the interplay between topology (Betti numbers and harmonic modes) and non-linear dynamics. This unveils how topology might play a role in the onset of brain rhythms.

Diffusion-driven instability of topological signals coupled by the Dirac operator

The study of reaction-diffusion systems on networks is of paramount relevance for the understanding of nonlinear processes in systems where the topology is intrinsically discrete, such as the brain. Until now, reaction-diffusion systems have been studied only when species are defined on the nodes of a network. However, in a number of real systems including, e.g., the brain and the climate, dynamical variables are not only defined on nodes but also on links, faces, and higher-dimensional cells of simplicial or cell complexes, leading to topological signals. In this work, we study reaction-diffusion processes of topological signals coupled through the Dirac operator. The Dirac operator allows topological signals of different dimension to interact or cross-diffuse as it projects the topological signals defined on simplices or cells of a given dimension to simplices or cells of one dimension up or one dimension down. By focusing on the framework involving nodes and links, we establish the conditions for the emergence of Turing patterns and we show that the latter are never localized only on nodes or only on links of the network. Moreover, when the topological signals display a Turing pattern their projection does as well. We validate the theory hereby developed on a benchmark network model and on square lattices with periodic boundary conditions.

Elastohydrodynamic Relaxation of Soft and Deformable Microchannels

Hydrodynamic flows in compliant channels are of great interest in physiology and microfluidics. In these situations, elastohydrodynamic coupling leads to (i) a nonlinear pressure-vs-flow-rate relation, strongly affecting the hydraulic resistance; and (ii), because of the compliance-enabled volume storage, a finite relaxation time under a stepwise change in pressure. This latter effect remains relatively unexplored, even while the timescale can vary over a decade in typical situations. In this study we provide time-resolved measurements of the relaxation dynamics for thin and soft, rectangular microfluidic channels. We describe our data using a perturbative lubrication approximation of the Stokes equation coupled to linear elasticity, while taking into account the effect of compliance and resistance of the entrance. The modeling allows us to completely describe all of the experimental results. Our Letter is relevant for any microfluidic scenario wherein a time-dependent driving is applied and provides a first step in the dynamical description of compliant channel networks.

Weighted simplicial complexes and their representation power of higher-order network data and topology

Hypergraphs and simplical complexes both capture the higher-order interactions of complex systems, ranging from higher-order collaboration networks to brain networks. One open problem in the field is what should drive the choice of the adopted mathematical framework to describe higher-order networks starting from data of higher-order interactions. Unweighted simplicial complexes typically involve a loss of information of the data, though having the benefit to capture the higher-order topology of the data. In this work we show that weighted simplicial complexes allow one to circumvent all the limitations of unweighted simplicial complexes to represent higher-order interactions. In particular, weighted simplicial complexes can represent higher-order networks without loss of information, allowing one at the same time to capture the weighted topology of the data. The higher-order topology is probed by studying the spectral properties of suitably defined weighted Hodge Laplacians displaying a normalized spectrum. The higher-order spectrum of (weighted) normalized Hodge Laplacians is studied combining cohomology theory with information theory. In the proposed framework we quantify and compare the information content of higher-order spectra of different dimension using higher-order spectral entropies and spectral relative entropies. The proposed methodology is tested on real higher-order collaboration networks and on the weighted version of the simplicial complex model "Network Geometry with Flavor."

Dark soliton detection using persistent homology

Classifying images often requires manual identification of qualitative features. Machine learning approaches including convolutional neural networks can achieve accuracy comparable to human classifiers but require extensive data and computational resources to train. We show how a topological data analysis technique, persistent homology, can be used to rapidly and reliably identify qualitative features in experimental image data. The identified features can be used as inputs to simple supervised machine learning models, such as logistic regression models, which are easier to train. As an example, we consider the identification of dark solitons using a dataset of 6257 labeled atomic Bose-Einstein condensate density images.

Lifespan dynamics of cluster conformations in stationary regimes in granular materials

We examine stationary regimes in granular materials from a dynamical systems theory perspective. The aim is to enrich the classical view of the critical state regime in granular materials, and more broadly, to improve the fundamental understanding of the underlying mesoscale mechanisms responsible for macroscopic stationary states in complex systems. This study is based on a series of discrete element method simulations, in which two-dimensional assemblies of nonuniformly sized circular particles are subjected to biaxial compression under constant lateral confining pressure. The lifespan and life expectancy of specific cluster conformations, comprising particles in force chains and grain loops, are tracked and quantified. Results suggest that these conformational clusters reorganize at similar rates in the critical state regime, depending on strain magnitudes and confining pressure levels. We quantified this rate of reorganization and found that the material memory rapidly fades, with an entirely new generation of force chains and grain loops replacing the old within a few percent strain.