Characterization of the Clogging Transition in Vibrated Granular Media

Anchoring Effect of an Obstacle in the Silo Unclogging Process

Contrary to the proven beneficial role that placing an obstacle above a silo exit has in clogging prevention, we demonstrate that, when the system is gently shaken, this passive element has a twofold effect in the clogging destruction process. On one side, the obstacle eases the destruction of weak arches, a phenomenon that can be explained by the pressure screening that it causes in the outlet proximities. But on the other side, we discover that the obstacle presence leads to the development of a few very strong arches. These arches, which dominate in the heavy tailed distributions of unclogging times, correlate with configurations where the number of particles contacting the obstacle from below are higher than the average; hence suggesting that the obstacle acts as an anchoring point for the granular packing. This finding may help one to understand the ambiguous effect of obstacles in the bottleneck flow of other systems, such as pedestrians evacuating a room or active matter in general.

Role of DNA-DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging

Many viruses eject their DNA via a nanochannel in the viral shell, driven by internal forces arising from the high-density genome packing. The speed of DNA exit is controlled by friction forces that limit the molecular mobility, but the nature of this friction is unknown. We introduce a method to probe the mobility of the tightly confined DNA by measuring DNA exit from phage phi29 capsids with optical tweezers. We measure extremely low initial exit velocity, a regime of exponentially increasing velocity, stochastic pausing that dominates the kinetics and large dynamic heterogeneity. Measurements with variable applied force provide evidence that the initial velocity is controlled by DNA-DNA sliding friction, consistent with a Frenkel-Kontorova model for nanoscale friction. We confirm several aspects of the ejection dynamics predicted by theoretical models. Features of the pausing suggest that it is connected to the phenomenon of 'clogging' in soft matter systems. Our results provide evidence that DNA-DNA friction and clogging control the DNA exit dynamics, but that this friction does not significantly affect DNA packaging.

Role of DNA-DNA sliding friction and non-equilibrium dynamics in viral genome ejection and packaging

Many viruses eject their DNA via a nanochannel in the viral shell, driven by internal forces arising from the high-density genome packing. The speed of DNA exit is controlled by friction forces that limit the molecular mobility, but the nature of this friction is unknown. We introduce a method to probe the mobility of the tightly confined DNA by measuring DNA exit from phage phi29 capsids with optical tweezers. We measure extremely low initial exit velocity, a regime of exponentially increasing velocity, stochastic pausing that dominates the kinetics, and large dynamic heterogeneity. Measurements with variable applied force provide evidence that the initial velocity is controlled by DNA-DNA sliding friction, consistent with a Frenkel-Kontorova model for nanoscale friction. We confirm several aspects of the ejection dynamics predicted by theoretical models. Features of the pausing suggest it is connected to the phenomenon of "clogging" in soft-matter systems. Our results provide evidence that DNA-DNA friction and clogging control the DNA exit dynamics, but that this friction does not significantly affect DNA packaging.

Frictional Weakening of Vibrated Granular Flows

We computationally study the frictional properties of sheared granular media subjected to harmonic vibration applied at the boundary. Such vibrations are thought to play an important role in weakening flows, yet the independent effects of amplitude, frequency, and pressure on the process have remained unclear. Based on a dimensional analysis and DEM simulations, we show that, in addition to a previously proposed criterion for peak acceleration that leads to breaking of contacts, weakening requires the absolute amplitude squared of the displacement to be sufficiently large relative to the confining pressure. The analysis provides a basis for predicting flows subjected to arbitrary external vibration and demonstrates that a previously unrecognized second process that is dependent on dissipation contributes to shear weakening under vibrations.

Role of cohesion in the flow of active particles through bottlenecks

We experimentally and numerically study the flow of programmable active particles (APs) with tunable cohesion strength through geometric constrictions. Similar to purely repulsive granular systems, we observe an exponential distribution of burst sizes and power-law-distributed clogging durations. Upon increasing cohesion between APs, we find a rather abrupt transition from an arch-dominated clogging regime to a cohesion-dominated regime where droplets form at the aperture of the bottleneck. In the arch-dominated regime the flow-rate only weakly depends on the cohesion strength. This suggests that cohesion must not necessarily decrease the group's efficiency passing through geometric constrictions or pores. Such behavior is explained by "slippery" particle bonds which avoids the formation of a rigid particle network and thus prevents clogging. Overall, our results confirm the general applicability of the statistical framework of intermittent flow through bottlenecks developed for granular materials also in case of active microswimmers whose behavior is more complex than that of Brownian particles but which mimic the behavior of living systems.

Collisional regime during the discharge of a two-dimensional silo

The present work reports an investigation into the collisional dynamics of particles in the vicinity of the outlet of a two-dimensional silo using molecular dynamics simulations. Most studies on this granular system focus in the bulk of the medium. In this region, contacts are permanent or long-lived, so continuous approximations are able to yield results for velocity distributions or mass flow. Close to the exit, however, the density of the medium decreases and contacts are instantaneous. Thus, the collisional nature of the dynamics becomes significant, warranting a dedicated investigation as carried out in this work. More interesting, the vicinity of the outlet is the region where the arches that block the flow for small apertures are formed. It is found that the transition from the clogging regime (at small apertures) to the continuous flow regime is smooth in collisional variables. Furthermore, the dynamics of particles as reflected by the distributions of the velocities is as well unaffected. This result implies that there is no critical outlet size that separates both regimes, as had been proposed in the literature. Instead, the results achieved support the alternative picture in which a clog is possible for any outlet size.