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Puttkammer F, Lindner B. Fluctuation-response relations for integrate-and-fire models with an absolute refractory period. BIOLOGICAL CYBERNETICS 2024; 118:7-19. [PMID: 38261004 PMCID: PMC11068698 DOI: 10.1007/s00422-023-00982-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 12/11/2023] [Indexed: 01/24/2024]
Abstract
We study the problem of relating the spontaneous fluctuations of a stochastic integrate-and-fire (IF) model to the response of the instantaneous firing rate to time-dependent stimulation if the IF model is endowed with a non-vanishing refractory period and a finite (stereotypical) spike shape. This seemingly harmless addition to the model is shown to complicate the analysis put forward by Lindner Phys. Rev. Lett. (2022), i.e., the incorporation of the reset into the model equation, the Rice-like averaging of the stochastic differential equation, and the application of the Furutsu-Novikov theorem. We derive a still exact (although more complicated) fluctuation-response relation (FRR) for an IF model with refractory state and a white Gaussian background noise. We also briefly discuss an approximation for the case of a colored Gaussian noise and conclude with a summary and outlook on open problems.
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Affiliation(s)
- Friedrich Puttkammer
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, 10115, Berlin, Germany
- Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489, Berlin, Germany
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Philippstr. 13, Haus 2, 10115, Berlin, Germany.
- Physics Department of Humboldt University Berlin, Newtonstr. 15, 12489, Berlin, Germany.
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2
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Papo D, Buldú JM. Does the brain behave like a (complex) network? I. Dynamics. Phys Life Rev 2024; 48:47-98. [PMID: 38145591 DOI: 10.1016/j.plrev.2023.12.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 12/10/2023] [Indexed: 12/27/2023]
Abstract
Graph theory is now becoming a standard tool in system-level neuroscience. However, endowing observed brain anatomy and dynamics with a complex network structure does not entail that the brain actually works as a network. Asking whether the brain behaves as a network means asking whether network properties count. From the viewpoint of neurophysiology and, possibly, of brain physics, the most substantial issues a network structure may be instrumental in addressing relate to the influence of network properties on brain dynamics and to whether these properties ultimately explain some aspects of brain function. Here, we address the dynamical implications of complex network, examining which aspects and scales of brain activity may be understood to genuinely behave as a network. To do so, we first define the meaning of networkness, and analyse some of its implications. We then examine ways in which brain anatomy and dynamics can be endowed with a network structure and discuss possible ways in which network structure may be shown to represent a genuine organisational principle of brain activity, rather than just a convenient description of its anatomy and dynamics.
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Affiliation(s)
- D Papo
- Department of Neuroscience and Rehabilitation, Section of Physiology, University of Ferrara, Ferrara, Italy; Center for Translational Neurophysiology, Fondazione Istituto Italiano di Tecnologia, Ferrara, Italy.
| | - J M Buldú
- Complex Systems Group & G.I.S.C., Universidad Rey Juan Carlos, Madrid, Spain
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3
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Richardson MJE. Linear and nonlinear integrate-and-fire neurons driven by synaptic shot noise with reversal potentials. Phys Rev E 2024; 109:024407. [PMID: 38491664 DOI: 10.1103/physreve.109.024407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 12/18/2023] [Indexed: 03/18/2024]
Abstract
The steady-state firing rate and firing-rate response of the leaky and exponential integrate-and-fire models receiving synaptic shot noise with excitatory and inhibitory reversal potentials is examined. For the particular case where the underlying synaptic conductances are exponentially distributed, it is shown that the master equation for a population of such model neurons can be reduced from an integrodifferential form to a more tractable set of three differential equations. The system is nevertheless more challenging analytically than for current-based synapses: where possible, analytical results are provided with an efficient numerical scheme and code provided for other quantities. The increased tractability of the framework developed supports an ongoing critical comparison between models in which synapses are treated with and without reversal potentials, such as recently in the context of networks with balanced excitatory and inhibitory conductances.
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Affiliation(s)
- Magnus J E Richardson
- Warwick Mathematics Institute, University of Warwick, Coventry CV4 7AL, United Kingdom
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4
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Deco G, Lynn CW, Sanz Perl Y, Kringelbach ML. Violations of the fluctuation-dissipation theorem reveal distinct nonequilibrium dynamics of brain states. Phys Rev E 2023; 108:064410. [PMID: 38243472 DOI: 10.1103/physreve.108.064410] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 10/16/2023] [Indexed: 01/21/2024]
Abstract
The brain is a nonequilibrium system whose dynamics change in different brain states, such as wakefulness and deep sleep. Thermodynamics provides the tools for revealing these nonequilibrium dynamics. We used violations of the fluctuation-dissipation theorem to describe the hierarchy of nonequilibrium dynamics associated with different brain states. Together with a whole-brain model fitted to empirical human neuroimaging data, and deriving the appropriate analytical expressions, we were able to capture the deviation from equilibrium in different brain states that arises from asymmetric interactions and hierarchical organization.
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Affiliation(s)
- Gustavo Deco
- Center for Brain and Cognition, Computational Neuroscience Group, Universitat Pompeu Fabra, Roc Boronat 138, Barcelona 08018, Spain
- Institució Catalana de la Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, Barcelona 08010, Spain
| | - Christopher W Lynn
- Initiative for the Theoretical Sciences, Graduate Center, City University of New York, New York, New York 10016, USA and Joseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey 08544, USA
| | - Yonatan Sanz Perl
- Center for Brain and Cognition, Computational Neuroscience Group, Universitat Pompeu Fabra, Roc Boronat 138, Barcelona 08018, Spain
- Department of Physics, University of Buenos Aires, Buenos Aires 1428, Argentina and Paris Brain Institute (ICM), Paris 75013, France
| | - Morten L Kringelbach
- Centre for Eudaimonia and Human Flourishing, Linacre College, University of Oxford, Oxford OX3 9BX, United Kingdom; Department of Psychiatry, University of Oxford, Oxford OX3 7JX, United Kingdom; and Center for Music in the Brain, Department of Clinical Medicine, Aarhus University, Aarhus 8000, Denmark
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Papo D, Bucolo M, Dimitriadis SI, Onton JA, Philippu A, Shannahoff-Khalsa D. Editorial: Advances in brain dynamics in the healthy and psychiatric disorders. Front Psychiatry 2023; 14:1284670. [PMID: 37779613 PMCID: PMC10539585 DOI: 10.3389/fpsyt.2023.1284670] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 08/31/2023] [Indexed: 10/03/2023] Open
Affiliation(s)
- David Papo
- Center for Translational Neurophysiology of Speech and Communication, Fondazione Istituto Italiano di Tecnologia, Ferrara, Italy
- Department of Neuroscience and Rehabilitation, Section of Physiology, University of Ferrara, Ferrara, Italy
| | - Maide Bucolo
- Department of Electrical, Electronic and Informatics, University of Catania, Catania, Italy
| | - Stavros I. Dimitriadis
- Department of Clinical Psychology and Psychobiology, Faculty of Psychology, University of Barcelona, Barcelona, Spain
| | - Julie A. Onton
- Institute of Neural Computation, University of California, San Diego, La Jolla, CA, United States
| | - Athineos Philippu
- Department of Pharmacology and Toxicology, University of Innsbruck, Innsbruck, Austria
| | - David Shannahoff-Khalsa
- BioCircuits Institute, University of California San Diego, La Jolla, CA, United States
- Center for Integrative Medicine, University of California San Diego, La Jolla, CA, United States
- The Khalsa Foundation for Medical Science, Del Mar, CA, United States
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Pérez-Cervera A, Gutkin B, Thomas PJ, Lindner B. A universal description of stochastic oscillators. Proc Natl Acad Sci U S A 2023; 120:e2303222120. [PMID: 37432992 PMCID: PMC10629544 DOI: 10.1073/pnas.2303222120] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 05/18/2023] [Indexed: 07/13/2023] Open
Abstract
Many systems in physics, chemistry, and biology exhibit oscillations with a pronounced random component. Such stochastic oscillations can emerge via different mechanisms, for example, linear dynamics of a stable focus with fluctuations, limit-cycle systems perturbed by noise, or excitable systems in which random inputs lead to a train of pulses. Despite their diverse origins, the phenomenology of random oscillations can be strikingly similar. Here, we introduce a nonlinear transformation of stochastic oscillators to a complex-valued function [Formula: see text](x) that greatly simplifies and unifies the mathematical description of the oscillator's spontaneous activity, its response to an external time-dependent perturbation, and the correlation statistics of different oscillators that are weakly coupled. The function [Formula: see text] (x) is the eigenfunction of the Kolmogorov backward operator with the least negative (but nonvanishing) eigenvalue λ1 = μ1 + iω1. The resulting power spectrum of the complex-valued function is exactly given by a Lorentz spectrum with peak frequency ω1 and half-width μ1; its susceptibility with respect to a weak external forcing is given by a simple one-pole filter, centered around ω1; and the cross-spectrum between two coupled oscillators can be easily expressed by a combination of the spontaneous power spectra of the uncoupled systems and their susceptibilities. Our approach makes qualitatively different stochastic oscillators comparable, provides simple characteristics for the coherence of the random oscillation, and gives a framework for the description of weakly coupled oscillators.
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Affiliation(s)
- Alberto Pérez-Cervera
- Department of Applied Mathematics, Instituto de Matemática Interdisciplinar, Universidad Complutense de Madrid, Madrid28040, Spain
| | - Boris Gutkin
- Group for Neural Theory, LNC2 INSERM U960, Département d’Etudes Cognitives, Ecole Normale Supérieure - Paris Science Letters University, Paris75005, France
| | - Peter J. Thomas
- Department of Mathematics, Applied Mathematics, and Statistics, Case Western Reserve University, Cleveland, OH44106
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience Berlin, Berlin10115, Germany
- Department of Physics, Humboldt Universität zu Berlin, BerlinD-12489, Germany
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Nandi MK, de Candia A, Sarracino A, Herrmann HJ, de Arcangelis L. Fluctuation-dissipation relations in the imbalanced Wilson-Cowan model. Phys Rev E 2023; 107:064307. [PMID: 37464662 DOI: 10.1103/physreve.107.064307] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 05/15/2023] [Indexed: 07/20/2023]
Abstract
The relation between spontaneous and stimulated brain activity is a fundamental question in neuroscience which has received wide attention in experimental studies. Recently, it has been suggested that the evoked response to external stimuli can be predicted from temporal correlations of spontaneous activity. Previous theoretical results, confirmed by the comparison with magnetoencephalography data for human brains, were obtained for the Wilson-Cowan model in the condition of balance of excitation and inhibition, a signature of a healthy brain. Here we extend previous studies to imbalanced conditions by examining a region of parameter space around the balanced fixed point. Analytical results are compared to numerical simulations of Wilson-Cowan networks. We evidence that in imbalanced conditions the functional form of the time correlation and response functions can show several behaviors, exhibiting also an oscillating regime caused by the emergence of complex eigenvalues. The analytical predictions are fully in agreement with numerical simulations, validating the role of cross-correlations in the response function. Furthermore, we identify the leading role of inhibitory neurons in controlling the overall activity of the system, tuning the level of excitability and imbalance.
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Affiliation(s)
- Manoj Kumar Nandi
- Department of Engineering, University of Campania "Luigi Vanvitelli" 81031 Aversa (Caserta), Italy
| | - Antonio de Candia
- Department of Physics "E. Pancini", University of Naples Federeico II, 80126 Naples, Italy
- INFN, Section of Naples, Gruppo collegato di Salerno, 84084 Fisciano, Italy
| | - Alessandro Sarracino
- Department of Engineering, University of Campania "Luigi Vanvitelli" 81031 Aversa (Caserta), Italy
- Institute for Complex Systems-CNR, Piazzale Aldo Moro 2, 00185 Rome, Italy
| | - Hans J Herrmann
- PMMH, ESPCI, 7 quai St. Bernard, Paris 75005, France
- Department of Physics, Federal University of Ceará, Fortaleza, Ceará 60451-970, Brazil
| | - Lucilla de Arcangelis
- Department of Mathematics & Physics, University of Campania "Luigi Vanvitelli" Viale Lincoln, 5, 81100 Caserta, Italy
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