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Kailasham R, Khair AS. The influence of active agent motility on SIRS epidemiological dynamics. SOFT MATTER 2024. [PMID: 39531013 DOI: 10.1039/d4sm00864b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
Active Brownian disks moving in two dimensions that exchange information about their internal state stochastically are chosen to model epidemic spread in a self-propelled population of agents under the susceptible-infected-recovered-susceptible (SIRS) framework. The state of infection of an agent, or disk, governs its self-propulsion speed; consequently, the activity of the agents in the system varies in time. Two different protocols (one-to-one and one-to-many) are considered for the transmission of disease from the infected to susceptible populations. The effectiveness of the two protocols are practically identical at high values of the infection transmission rate. The one-to-many protocol, however, outperforms the one-to-one protocol at lower values of the infection transmission rate. Salient features of the macroscopic SIRS model are revisited, and compared to predictions from the agent-based model. Lastly, the motility induced phase separation in a population of such agents with a fluctuating fraction of active disks is found to be well-described by theories governing phase separation in a mixture of active and passive particles with a constant fraction of passive disks.
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Affiliation(s)
- R Kailasham
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
| | - Aditya S Khair
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
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2
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Jin YY, Jin Y, Shi ZX, Tian WD, Zhang TH, Chen K. Deformation-induced phase separation of active vesicles. Phys Chem Chem Phys 2024; 26:24699-24708. [PMID: 39282801 DOI: 10.1039/d4cp02535k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/26/2024]
Abstract
Many active materials, such as bacteria and cells, are deformable. Deformability significantly affects their collective behaviors and movements in complex environments. Here, we introduce a two-dimensional deformable active vesicle (DAV) model to emulate cell-like deformable active matter, wherein the deformability can be continuously adjusted. We find that changes in deformability can induce phase separation of DAVs. The system can transition between a homogeneous gas state, a coexistence of gas and liquid, and a coexistence of gas and solid. The occurrence of deformation-induced phase separation is accompanied by nonmonotonic changes in effective concentration, particle size and shape. Moreover, the degree of deformability also impacts the motility and stress within the dense phase following phase separation. Our results offer new insights into the role of deformability in the collective behavior of active matter.
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Affiliation(s)
- Yi-Yang Jin
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
| | - Yan Jin
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
| | - Zi-Xuan Shi
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
| | - Wen-de Tian
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
| | - Tian-Hui Zhang
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
| | - Kang Chen
- Center for Soft Condensed Matter Physics & Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
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Jiang G, You Z, Ma R, Wu C. Spontaneous stable rotation of flocking flexible active matter. SOFT MATTER 2024; 20:5086-5094. [PMID: 38888040 DOI: 10.1039/d4sm00372a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
In this paper we present an n-node flexible active matter model to study the collective motion due to the flocking of individual achiral agents on a two-dimensional surface. By introducing a measure of the direction detectability of the agents to tune their body direction towards the food source, we find that a spontaneous stable cluster rotation emerges with increasing direction detectability. The spontaneous rotation is synchronized with the chirality produced by the alignment of their bodies under the impetus of the active force. A linear relationship between the normalized angular velocity and chirality is observed and the numerical simulation agrees well with the analytical derivation. The conclusions explain well the spontaneous stable rotation of clusters that exists in many flexible active matter systems, like worms or dogs, when they flock to the same single source.
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Affiliation(s)
- Gaoxiao Jiang
- Department of Physics, College of Physical Science and Technology, Xiamen University, Xiamen 361005, China.
| | - Zhihong You
- Department of Physics, College of Physical Science and Technology, Xiamen University, Xiamen 361005, China.
- Fujian Provincial Key Laboratory for Soft Functional Materials Research, Research Institute for Biomimetics and Soft Matter, Xiamen University, Xiamen 361005, China
| | - Rui Ma
- Department of Physics, College of Physical Science and Technology, Xiamen University, Xiamen 361005, China.
- Fujian Provincial Key Laboratory for Soft Functional Materials Research, Research Institute for Biomimetics and Soft Matter, Xiamen University, Xiamen 361005, China
| | - Chenxu Wu
- Department of Physics, College of Physical Science and Technology, Xiamen University, Xiamen 361005, China.
- Fujian Provincial Key Laboratory for Soft Functional Materials Research, Research Institute for Biomimetics and Soft Matter, Xiamen University, Xiamen 361005, China
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Bandyopadhyay S, Chatterjee S, Dutta AK, Karmakar M, Rieger H, Paul R. Ordering kinetics in the active Ising model. Phys Rev E 2024; 109:064143. [PMID: 39020881 DOI: 10.1103/physreve.109.064143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 06/06/2024] [Indexed: 07/20/2024]
Abstract
We undertake a numerical study of the ordering kinetics in the two-dimensional (2D) active Ising model (AIM), a discrete flocking model with a conserved density field coupled to a nonconserved magnetization field. We find that for a quench into the liquid-gas coexistence region and in the ordered liquid region, the characteristic length scale of both the density and magnetization domains follows the Lifshitz-Cahn-Allen growth law, R(t)∼t^{1/2}, consistent with the growth law of passive systems with scalar order parameter and nonconserved dynamics. The system morphology is analyzed with the two-point correlation function and its Fourier transform, the structure factor, which conforms to the well-known Porod's law, a manifestation of the coarsening of compact domains with smooth boundaries. We also find the domain growth exponent unaffected by different noise strengths and self-propulsion velocities of the active particles. However, transverse diffusion is found to play the most significant role in the growth kinetics of the AIM. We extract the same growth exponent by solving the hydrodynamic equations of the AIM.
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Caporusso CB, Cugliandolo LF, Digregorio P, Gonnella G, Suma A. Phase separation kinetics and cluster dynamics in two-dimensional active dumbbell systems. SOFT MATTER 2024; 20:4208-4225. [PMID: 38741521 DOI: 10.1039/d4sm00200h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Molecular dynamics simulations were employed to investigate the phase separation process of a two-dimensional active Brownian dumbbell model. We evaluated the time dependence of the typical size of the dense component using the scaling properties of the structure factor, along with the averaged number of clusters and their radii of gyration. The growth observed is faster than in active disk models, and this effect is further enhanced under stronger activity. Next, we focused on studying the hexatic order of the clusters. The length associated with the orientational order increases algebraically with time and faster than for spherical active Brownian particles. Under weak active forces, most clusters exhibit a uniform internal orientational order. However, under strong forces, large clusters consist of domains with different orientational orders. We demonstrated that the latter configurations are not stable, and given sufficient time to evolve, they eventually achieve homogeneous configurations as well. No gas bubbles are formed within the clusters, even when there are patches of different hexatic order. Finally, attention was directed towards the geometry and motion of the clusters themselves. By employing a tracking algorithm, we showed that clusters smaller than the typical size at the observation time exhibit regular shapes, while larger ones display fractal characteristics. In between collisions or break-ups, the clusters behave as solid bodies. Their centers of mass undergo circular motion, with radii increasing with the cluster size. The angular velocity of the center of mass equals that of the constituents with respect to their center of mass. These observations were rationalised with a simple mechanical model.
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Affiliation(s)
- C B Caporusso
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
| | - L F Cugliandolo
- CNRS, Laboratoire de Physique Théorique et Hautes Energies, LPTHE, Sorbonne Université, F-75005 Paris, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
| | - P Digregorio
- Departement de Fisica de la Materia Condensada, Facultat de Fisica, Universitat de Barcelona, Martí i Franquès 1, E08028 Barcelona, Spain.
- UBICS University of Barcelona Institute of Complex Systems, Martí i Franquès 1, E08028 Barcelona, Spain
| | - G Gonnella
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
| | - A Suma
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
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Caporusso CB, Negro G, Suma A, Digregorio P, Carenza LN, Gonnella G, Cugliandolo LF. Phase behaviour and dynamics of three-dimensional active dumbbell systems. SOFT MATTER 2024; 20:923-939. [PMID: 38189452 DOI: 10.1039/d3sm01030a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
Abstract
We present a comprehensive numerical study of the phase behavior and dynamics of a three-dimensional active dumbbell system with attractive interactions. We demonstrate that attraction is essential for the system to exhibit nontrivial phases. We construct a detailed phase diagram by exploring the effects of the system's activity, density, and attraction strength. We identify several distinct phases, including a disordered, a gel, and a completely phase-separated phase. Additionally, we discover a novel dynamical phase, that we name percolating network, which is characterized by the presence of a spanning network of connected dumbbells. In the phase-separated phase we characterize numerically and describe analytically the helical motion of the dense cluster.
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Affiliation(s)
- C B Caporusso
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy.
| | - G Negro
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy.
| | - A Suma
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy.
| | - P Digregorio
- Departement de Fisica de la Materia Condensada, Facultat de Fisica, Universitat de Barcelona, Martí i Franquès 1, E08028 Barcelona, Spain
- UBICS University of Barcelona Institute of Complex Systems, Martí i Franquès 1, E08028 Barcelona, Spain
| | - L N Carenza
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA Leiden, The Netherlands
- Department of Physics, Koç University, Rumelifeneri Yolu, 34450 Saryer, Istanbul, Turkey
| | - G Gonnella
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy.
| | - L F Cugliandolo
- CNRS, Laboratoire de Physique Théorique et Hautes Energies, LPTHE, Sorbonne Université, F-75005 Paris, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
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Duan Y, Agudo-Canalejo J, Golestanian R, Mahault B. Dynamical Pattern Formation without Self-Attraction in Quorum-Sensing Active Matter: The Interplay between Nonreciprocity and Motility. PHYSICAL REVIEW LETTERS 2023; 131:148301. [PMID: 37862639 DOI: 10.1103/physrevlett.131.148301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 08/31/2023] [Indexed: 10/22/2023]
Abstract
We study a minimal model involving two species of particles interacting via quorum-sensing rules. Combining simulations of the microscopic model and linear stability analysis of the associated coarse-grained field theory, we identify a mechanism for dynamical pattern formation that does not rely on the standard route of intraspecies effective attractive interactions. Instead, our results reveal a highly dynamical phase of chasing bands induced only by the combined effects of self-propulsion and nonreciprocity in the interspecies couplings. Turning on self-attraction, we find that the system may phase separate into a macroscopic domain of such chaotic chasing bands coexisting with a dilute gas. We show that the chaotic dynamics of bands at the interfaces of this phase-separated phase results in anomalously slow coarsening.
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Affiliation(s)
- Yu Duan
- Max Planck Institute for Dynamics and Self-Organization (MPI-DS), 37077 Göttingen, Germany
| | - Jaime Agudo-Canalejo
- Max Planck Institute for Dynamics and Self-Organization (MPI-DS), 37077 Göttingen, Germany
| | - Ramin Golestanian
- Max Planck Institute for Dynamics and Self-Organization (MPI-DS), 37077 Göttingen, Germany
- Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom
| | - Benoît Mahault
- Max Planck Institute for Dynamics and Self-Organization (MPI-DS), 37077 Göttingen, Germany
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