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Østergaard M, Naver EB, Kaestner A, Willendrup PK, Brüel A, Sørensen HO, Thomsen JS, Schmidt S, Poulsen HF, Theil Kuhn L, Birkedal H. Polychromatic neutron phase-contrast imaging of weakly absorbing samples enabled by phase retrieval. J Appl Crystallogr 2023; 56:673-682. [PMID: 37284268 PMCID: PMC10241042 DOI: 10.1107/s1600576723003011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 04/01/2023] [Indexed: 06/08/2023] Open
Abstract
The use of a phase-retrieval technique for propagation-based phase-contrast neutron imaging with a polychromatic beam is demonstrated. This enables imaging of samples with low absorption contrast and/or improving the signal-to-noise ratio to facilitate e.g. time-resolved measurements. A metal sample, designed to be close to a phase pure object, and a bone sample with canals partially filled with D2O were used for demonstrating the technique. These samples were imaged with a polychromatic neutron beam followed by phase retrieval. For both samples the signal-to-noise ratios were significantly improved and, in the case of the bone sample, the phase retrieval allowed for separation of bone and D2O, which is important for example for in situ flow experiments. The use of deuteration contrast avoids the use of chemical contrast enhancement and makes neutron imaging an interesting complementary method to X-ray imaging of bone.
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Affiliation(s)
- Maja Østergaard
- Department of Chemistry and iNANO, Aarhus University, Gustav Wieds Vej 14, Aarhus, Denmark
| | - Estrid Buhl Naver
- Department of Energy Conversion and Storage, Technical University of Denmark, Fysikvej 310, Kongens Lyngby, Denmark
| | - Anders Kaestner
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen, Switzerland
| | - Peter K. Willendrup
- Department of Physics, Technical University of Denmark, Fysikvej 307, Kongens Lyngby, Denmark
- European Spallation Source ERIC, PO Box 176, Lund, Sweden
| | - Annemarie Brüel
- Department of Biomedicine, Aarhus University, Wilhelm Meyers Allé 3, Aarhus, Denmark
| | - Henning Osholm Sørensen
- Department of Physics, Technical University of Denmark, Fysikvej 307, Kongens Lyngby, Denmark
- Xnovo Technology ApS, Galoche Alle 15, 1, Køge, Denmark
| | | | - Søren Schmidt
- European Spallation Source ERIC, PO Box 176, Lund, Sweden
| | - Henning Friis Poulsen
- Department of Physics, Technical University of Denmark, Fysikvej 307, Kongens Lyngby, Denmark
| | - Luise Theil Kuhn
- Department of Energy Conversion and Storage, Technical University of Denmark, Fysikvej 310, Kongens Lyngby, Denmark
| | - Henrik Birkedal
- Department of Chemistry and iNANO, Aarhus University, Gustav Wieds Vej 14, Aarhus, Denmark
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Lin X, Chen D, Zhang H, Ying Z, Asundi A, Yu Y. Measurement of acylindrical surface with transport of intensity equation. APPLIED OPTICS 2022; 61:B356-B362. [PMID: 35201159 DOI: 10.1364/ao.444870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
High-precision aspherical cylindrical (acylindrical) lenses are difficult to directly measure because of the phase deviation in the off-axis region. To achieve rapid and non-contact measurement of the acylindrical lens surface, a novel optical structure phase measurement, to the best of our knowledge, is presented in this work. Both common finite-difference and noise-reduction finite-difference methods were used for solving the transport of intensity equation (TIE) for reconstruction of high-resolution surface measurement. The results suggest that both common finite-difference and noise-reduction finite-difference methods can obtain good measurement results. The proposed method allows for the direct measurement of surface information without interference stitching. The accuracy of the TIE measurement has been verified through direct contact measurement.
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Zhou H, Stoykova E, Hussain M, Banerjee PP. Performance analysis of phase retrieval using transport of intensity with digital holography [Invited]. APPLIED OPTICS 2021; 60:A73-A83. [PMID: 33690356 DOI: 10.1364/ao.404390] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 09/21/2020] [Indexed: 06/12/2023]
Abstract
The performance of direct and unwrapped phase retrieval, which combines digital holography with the transport of intensity, is examined in detail in this paper. In this technique, digital holography is used to numerically reconstruct the intensities at different planes around the image plane, and phase retrieval is achieved by the transport of intensity. Digital holography with transport of intensity is examined for inline and off-axis geometries. The effect of twin images in the inline case is evaluated. Phase-shifting digital holography with transport of intensity is introduced. The performance of digital holography with transport of intensity is compared with traditional off-axis single- and dual-wavelength techniques, which employ standard phase unwrapping algorithms. Simulations and experiments are performed to determine and compare the accuracy of phase retrieval through a mean-squared-error figure of merit as well as the computational speeds of the various methods.
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Butler LG, Lehmann EH. Edge Enhancement in Cold Neutron Imaging: A Comparison of Experiments at Edges and Interfaces with Ray-tracing based on Refraction and Reflection. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.phpro.2013.03.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Fernandez V, Buffetaut E, Maire E, Adrien J, Suteethorn V, Tafforeau P. Phase contrast synchrotron microtomography: improving noninvasive investigations of fossil embryos in ovo. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2012; 18:179-185. [PMID: 22258725 DOI: 10.1017/s1431927611012426] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Fossil embryos are paramount for our understanding of the development of extinct species. However, although thousands of fossil amniote eggs are known, very few embryos in ovo have been described. First reports of fossil embryos were based on broken eggs, where the embryonic remains were already exposed, because destructive methods on complete eggs were avoided. Investigations of complete eggs therefore required nondestructive approaches, such as X-ray microtomography (μCT). However, due to the general low density contrast between fossilized bones and infilling matrix, only a few specimens have been reported using these techniques. Using propagation phase contrast X-ray synchrotron microtomography (PPC-SR-μCT), we report here the discovery of three well-preserved embryos in Early Cretaceous eggs from Thailand. By scanning these eggs using different imaging techniques, we show that vastly different interpretations can be made regarding the preservation state and/or the developmental stage of these embryos. PPC-SR-μCT also revealed differential contrast between bone categories, presumably reflecting the ossification pattern of these embryos. Applying such an approach to large-scale studies of fossil eggs could lead to more discoveries and detailed studies of fossil embryos, providing important developmental and phylogenetic information on extinct and extant amniotes.
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Affiliation(s)
- Vincent Fernandez
- European Synchrotron Radiation Facility, X-Ray Imaging Group, 6 rue Horowitz BP 220, 38046 Grenoble Cedex, France.
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Strobl M, Grünzweig C, Hilger A, Manke I, Kardjilov N, David C, Pfeiffer F. Neutron dark-field tomography. PHYSICAL REVIEW LETTERS 2008; 101:123902. [PMID: 18851372 DOI: 10.1103/physrevlett.101.123902] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2008] [Revised: 07/09/2008] [Indexed: 05/26/2023]
Abstract
We report how a grating interferometer yields neutron dark-field scatter images for tomographic investigations. The image contrast is based on ultrasmall-angle scattering. It provides otherwise inaccessible spatially resolved information about the distribution of micrometer and submicrometer sized structural formations. Three complementary sets of tomographic data corresponding to attenuation, differential phase, and small-angle scattering can be obtained from one measurement. The method is compatible with conventional imaging and provides significantly higher efficiency than existing techniques.
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Affiliation(s)
- M Strobl
- University of Heidelberg, Im Neuenheimer Feld 253, Heidelberg, Germany
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Grünzweig C, Pfeiffer F, Bunk O, Donath T, Kühne G, Frei G, Dierolf M, David C. Design, fabrication, and characterization of diffraction gratings for neutron phase contrast imaging. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:053703. [PMID: 18513071 DOI: 10.1063/1.2930866] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We have developed a neutron phase contrast imaging method based on a grating interferometer setup. The principal constituents are two absorption gratings made of gadolinium and a phase modulating grating made of silicon. The design parameters of the setup, such as periodicity, structure heights of the gratings, and the distances between the gratings, are calculated. The fabrication of each grating is described in detail. The produced diffraction gratings were finally characterized within the setup, by locally evaluating the produced contrast (visibility) in each detector pixel, resulting in a visibility map over the whole grating size. An averaged value of 23% is achieved.
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Affiliation(s)
- C Grünzweig
- Paul Scherrer Institut, CH-5232 Villigen-PSI, SwitzerlandEcole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland. christian.gruenzweig.@psi.ch
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Pfeiffer F, Grünzweig C, Bunk O, Frei G, Lehmann E, David C. Neutron phase imaging and tomography. PHYSICAL REVIEW LETTERS 2006; 96:215505. [PMID: 16803249 DOI: 10.1103/physrevlett.96.215505] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2006] [Indexed: 05/10/2023]
Abstract
We report how a setup consisting of three gratings yields quantitative two- and three-dimensional images depicting the quantum-mechanical phase shifts of neutron de Broglie wave packets induced by the influence of macroscopic objects. Since our approach requires only a little spatial and chromatic coherence it provides a more than 2 orders of magnitude higher efficiency than existing techniques. This dramatically reduces the required measurement time for computed phase tomography and opens up the way for three-dimensional investigations of previously inaccessible quantum-mechanical phase interactions of neutrons with matter.
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Affiliation(s)
- F Pfeiffer
- Paul Scherrer Institut, CH-5232 Villigen PSI, Switzerland
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Wu J, Weierstall U, Spence JCH. Diffractive electron imaging of nanoparticles on a substrate. NATURE MATERIALS 2005; 4:912-6. [PMID: 16299507 DOI: 10.1038/nmat1531] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2005] [Accepted: 09/26/2005] [Indexed: 05/05/2023]
Abstract
The observation of the detailed atomic arrangement within nanostructures has previously required the use of an electron microscope for imaging. The development of diffractive (lensless) imaging in X-ray science and electron microscopy using ab initio phase retrieval provides a promising tool for nanostructural characterization. We show that it is possible experimentally to reconstruct the atomic-resolution complex image (exit-face wavefunction) of a small particle lying on a thin carbon substrate from its electron microdiffraction pattern alone. We use a modified iterative charge-flipping algorithm and an estimate of the complex substrate image is subtracted at each iteration. The diffraction pattern is recorded using a parallel beam with a diameter of approximately 50 nm, illuminating a gold nanoparticle of approximately 13.6 nm diameter. Prior knowledge of the boundary of the object is not required. The method has the advantage that the reconstructed exit-face wavefunction is free of the aberrations of the objective lens normally used in the microscope, whereas resolution is limited only by thermal vibration and noise.
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Affiliation(s)
- Jinsong Wu
- Department of Physics and Astronomy, Arizona State University, Tempe, Arizona 85287-1504, USA.
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Gureyev TE, Paganin DM, Stevenson AW, Mayo SC, Wilkins SW. Generalized eikonal of partially coherent beams and its use in quantitative imaging. PHYSICAL REVIEW LETTERS 2004; 93:068103. [PMID: 15323666 DOI: 10.1103/physrevlett.93.068103] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2003] [Indexed: 05/02/2023]
Abstract
The generalized eikonal of a partially coherent paraxial wave is introduced via a differential equation describing the evolution of the time-averaged intensity. The theoretical formalism provides an analytical tool for the study of partially coherent imaging systems. It also makes possible quantitative phase retrieval and compositional mapping of weakly absorbing samples using phase-contrast imaging with broadband polychromatic radiation of known spectral distribution. An experimental demonstration is presented of the quantitative reconstruction of the projected thickness of a sample, given a phase-contrast image obtained using a polychromatic microfocus x-ray source.
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Affiliation(s)
- T E Gureyev
- CSIRO Manufacturing and Infrastructure Technology, PB33, Clayton 3169, Australia
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