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For: Su JT, Goddard WA. Excited electron dynamics modeling of warm dense matter. Phys Rev Lett 2007;99:185003. [PMID: 17995416 DOI: 10.1103/physrevlett.99.185003] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2007] [Indexed: 05/25/2023]
Number Cited by Other Article(s)
1
Herzfeld J. Art, fact and artifact: reflections on the cross-talk between theory and experiment. Phys Chem Chem Phys 2024;26:9848-9855. [PMID: 38502180 DOI: 10.1039/d4cp00005f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
2
Filinov AV, Bonitz M. Equation of state of partially ionized hydrogen and deuterium plasma revisited. Phys Rev E 2023;108:055212. [PMID: 38115427 DOI: 10.1103/physreve.108.055212] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 10/31/2023] [Indexed: 12/21/2023]
3
Svensson P, Campbell T, Graziani F, Moldabekov Z, Lyu N, Batista VS, Richardson S, Vinko SM, Gregori G. Development of a new quantum trajectory molecular dynamics framework. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023;381:20220325. [PMID: 37393934 PMCID: PMC10315217 DOI: 10.1098/rsta.2022.0325] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 01/19/2023] [Indexed: 07/04/2023]
4
Angermeier WA, Scheiner BS, Shaffer NR, White TG. Disentangling the effects of non-adiabatic interactions upon ion self-diffusion within warm dense hydrogen. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023;381:20230034. [PMID: 37393932 DOI: 10.1098/rsta.2023.0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 05/11/2023] [Indexed: 07/04/2023]
5
Li J, Song X, Li P, Herzfeld J. A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types. J Phys Chem A 2022;126:8468-8475. [DOI: 10.1021/acs.jpca.2c05338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
6
Bertolini S, Jacob T. Valence energy correction for electron reactive force field. J Comput Chem 2022;43:870-878. [PMID: 35319099 DOI: 10.1002/jcc.26844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 02/19/2022] [Accepted: 03/02/2022] [Indexed: 11/07/2022]
7
Cools-Ceuppens M, Dambre J, Verstraelen T. Modeling Electronic Response Properties with an Explicit-Electron Machine Learning Potential. J Chem Theory Comput 2022;18:1672-1691. [PMID: 35171606 DOI: 10.1021/acs.jctc.1c00978] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
8
Lavrinenko Y, Levashov PR, Minakov DV, Morozov IV, Valuev IA. Equilibrium properties of warm dense deuterium calculated by the wave packet molecular dynamics and density functional theory method. Phys Rev E 2021;104:045304. [PMID: 34781451 DOI: 10.1103/physreve.104.045304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/13/2021] [Indexed: 11/07/2022]
9
A Review of Recent Developments in Molecular Dynamics Simulations of the Photoelectrochemical Water Splitting Process. Catalysts 2021. [DOI: 10.3390/catal11070807] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
10
An Investigation into the Approximations Used in Wave Packet Molecular Dynamics for the Study of Warm Dense Matter. PLASMA 2021. [DOI: 10.3390/plasma4020020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
11
Jin R, Abdullah MM, Jurek Z, Santra R, Son SK. Transient ionization potential depression in nonthermal dense plasmas at high x-ray intensity. Phys Rev E 2021;103:023203. [PMID: 33735970 DOI: 10.1103/physreve.103.023203] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 01/22/2021] [Indexed: 11/07/2022]
12
Schwalbe S, Fiedler L, Kraus J, Kortus J, Trepte K, Lehtola S. PyFLOSIC: Python-based Fermi–Löwdin orbital self-interaction correction. J Chem Phys 2020;153:084104. [DOI: 10.1063/5.0012519] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Liu H, Zhou H, Kang W, Zhang P, Duan H, Zhang W, He XT. Dynamics of bond breaking and formation in polyethylene near shock front. Phys Rev E 2020;102:023207. [PMID: 32942414 DOI: 10.1103/physreve.102.023207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 07/28/2020] [Indexed: 06/11/2023]
14
Leven I, Head-Gordon T. C-GeM: Coarse-Grained Electron Model for Predicting the Electrostatic Potential in Molecules. J Phys Chem Lett 2019;10:6820-6826. [PMID: 31613629 DOI: 10.1021/acs.jpclett.9b02771] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
15
Schwalbe S, Trepte K, Fiedler L, Johnson AI, Kraus J, Hahn T, Peralta JE, Jackson KA, Kortus J. Interpretation and Automatic Generation of Fermi‐Orbital Descriptors. J Comput Chem 2019;40:2843-2857. [DOI: 10.1002/jcc.26062] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 08/13/2019] [Accepted: 08/14/2019] [Indexed: 01/28/2023]
16
de Vera P, Surdutovich E, Solov’yov AV. The role of shock waves on the biodamage induced by ion beam radiation. Cancer Nanotechnol 2019. [DOI: 10.1186/s12645-019-0050-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
17
Ma Q, Dai J, Kang D, Murillo MS, Hou Y, Zhao Z, Yuan J. Extremely Low Electron-ion Temperature Relaxation Rates in Warm Dense Hydrogen: Interplay between Quantum Electrons and Coupled Ions. PHYSICAL REVIEW LETTERS 2019;122:015001. [PMID: 31012692 DOI: 10.1103/physrevlett.122.015001] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 10/24/2018] [Indexed: 06/09/2023]
18
Shen Z, Herzfeld J. Floating Orbitals Reconsidered: The Difference an Imaginary Part Can Make. ACS OMEGA 2018;3:10992-10998. [PMID: 31459209 PMCID: PMC6645009 DOI: 10.1021/acsomega.8b01528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 08/20/2018] [Indexed: 06/10/2023]
19
Kang D, Dai J. Dynamic electron-ion collisions and nuclear quantum effects in quantum simulation of warm dense matter. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018;30:073002. [PMID: 29186001 DOI: 10.1088/1361-648x/aa9e29] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
20
Herzfeld J, Ekesan S. Exchange potentials for semi-classical electrons. Phys Chem Chem Phys 2018;18:30748-30753. [PMID: 27796385 DOI: 10.1039/c6cp06100a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
21
Direct Learning Hidden Excited State Interaction Patterns from ab initio Dynamics and Its Implication as Alternative Molecular Mechanism Models. Sci Rep 2017;7:8737. [PMID: 28821842 PMCID: PMC5562909 DOI: 10.1038/s41598-017-09347-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Accepted: 07/25/2017] [Indexed: 12/23/2022]  Open
22
Bai C, Kale S, Herzfeld J. Chemistry with semi-classical electrons: reaction trajectories auto-generated by sub-atomistic force fields. Chem Sci 2017;8:4203-4210. [PMID: 28626563 PMCID: PMC5468998 DOI: 10.1039/c7sc01181d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Accepted: 04/09/2017] [Indexed: 11/21/2022]  Open
23
Liu H, Zhang Y, Kang W, Zhang P, Duan H, He XT. Molecular dynamics simulation of strong shock waves propagating in dense deuterium, taking into consideration effects of excited electrons. Phys Rev E 2017;95:023201. [PMID: 28297841 DOI: 10.1103/physreve.95.023201] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Indexed: 06/06/2023]
24
Dharuman G, Verboncoeur J, Christlieb A, Murillo MS. Atomic bound state and scattering properties of effective momentum-dependent potentials. Phys Rev E 2016;94:043205. [PMID: 27841554 DOI: 10.1103/physreve.94.043205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Indexed: 06/06/2023]
25
Islam MM, Kolesov G, Verstraelen T, Kaxiras E, van Duin ACT. eReaxFF: A Pseudoclassical Treatment of Explicit Electrons within Reactive Force Field Simulations. J Chem Theory Comput 2016;12:3463-72. [DOI: 10.1021/acs.jctc.6b00432] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
26
Ekesan S, Lin DY, Herzfeld J. Magnetism and Bond Order in Diatomic Molecules Described by Semiclassical Electrons. J Phys Chem B 2016;120:6264-9. [PMID: 27197811 DOI: 10.1021/acs.jpcb.6b02576] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Akimov AV. Libra: An open-Source “methodology discovery” library for quantum and classical dynamics simulations. J Comput Chem 2016;37:1626-49. [DOI: 10.1002/jcc.24367] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 02/03/2016] [Accepted: 03/02/2016] [Indexed: 01/10/2023]
28
Pradhan E, Magyar RJ, Akimov AV. Scaling relationships for nonadiabatic energy relaxation times in warm dense matter: toward understanding the equation of state. Phys Chem Chem Phys 2016;18:32466-32476. [DOI: 10.1039/c6cp06827h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
Valuev IA, Morozov IV. Extension of the wave packet molecular dynamics method towards the accurate quantum simulations of electron dynamics. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/1742-6596/653/1/012153] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
30
Ekesan S, Herzfeld J. Pointillist rendering of electron charge and spin density suffices to replicate trends in atomic properties. Proc Math Phys Eng Sci 2015. [DOI: 10.1098/rspa.2015.0370] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
31
Akimov AV, Prezhdo OV. Large-Scale Computations in Chemistry: A Bird’s Eye View of a Vibrant Field. Chem Rev 2015;115:5797-890. [DOI: 10.1021/cr500524c] [Citation(s) in RCA: 159] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
32
Ekesan S, Kale S, Herzfeld J. Transferable pseudoclassical electrons for aufbau of atomic ions. J Comput Chem 2014;35:1159-64. [PMID: 24752384 DOI: 10.1002/jcc.23612] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2013] [Revised: 03/21/2014] [Accepted: 04/01/2014] [Indexed: 11/07/2022]
33
Grabowski PE, Markmann A, Morozov IV, Valuev IA, Fichtl CA, Richards DF, Batista VS, Graziani FR, Murillo MS. Wave packet spreading and localization in electron-nuclear scattering. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;87:063104. [PMID: 23848786 DOI: 10.1103/physreve.87.063104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2013] [Indexed: 06/02/2023]
34
Jaramillo-Botero A, An Q, Theofanis PL, Goddard WA. Large-scale Molecular Simulations of Hypervelocity Impact of Materials. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.proeng.2013.05.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
35
Jaramillo-Botero A, An Q, Cheng MJ, Goddard WA, Beegle LW, Hodyss R. Hypervelocity impact effect of molecules from Enceladus' plume and Titan's upper atmosphere on NASA's Cassini spectrometer from reactive dynamics simulation. PHYSICAL REVIEW LETTERS 2012;109:213201. [PMID: 23215593 DOI: 10.1103/physrevlett.109.213201] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 04/30/2012] [Indexed: 06/01/2023]
36
Intermolecular diatomic energies of a hydrogen dimer with non-Born–Oppenheimer nuclear and electron wave packets. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.02.073] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
37
Theofanis PL, Jaramillo-Botero A, Goddard WA, Xiao H. Nonadiabatic study of dynamic electronic effects during brittle fracture of silicon. PHYSICAL REVIEW LETTERS 2012;108:045501. [PMID: 22400860 DOI: 10.1103/physrevlett.108.045501] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2011] [Indexed: 05/31/2023]
38
High-temperature high-pressure phases of lithium from electron force field (eFF) quantum electron dynamics simulations. Proc Natl Acad Sci U S A 2011;108:15101-5. [PMID: 21873210 DOI: 10.1073/pnas.1110322108] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
39
Jaramillo-Botero A, Nielsen R, Abrol R, Su J, Pascal T, Mueller J, Goddard WA. First-Principles-Based Multiscale, Multiparadigm Molecular Mechanics and Dynamics Methods for Describing Complex Chemical Processes. MULTISCALE MOLECULAR METHODS IN APPLIED CHEMISTRY 2011;307:1-42. [DOI: 10.1007/128_2010_114] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
40
Jaramillo-Botero A, Su J, Qi A, Goddard WA. Large-scale, long-term nonadiabatic electron molecular dynamics for describing material properties and phenomena in extreme environments. J Comput Chem 2010;32:497-512. [DOI: 10.1002/jcc.21637] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2010] [Revised: 06/14/2010] [Accepted: 06/23/2010] [Indexed: 01/19/2023]
41
Su JT, Goddard WA. The dynamics of highly excited electronic systems: Applications of the electron force field. J Chem Phys 2009;131:244501. [DOI: 10.1063/1.3272671] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
42
Mechanisms of Auger-induced chemistry derived from wave packet dynamics. Proc Natl Acad Sci U S A 2009;106:1001-5. [PMID: 19164568 DOI: 10.1073/pnas.0812087106] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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