1
|
Yang SY, Lin WY, Hsiao YM, Chiou TJ. Milestones in understanding transport, sensing, and signaling of the plant nutrient phosphorus. THE PLANT CELL 2024; 36:1504-1523. [PMID: 38163641 PMCID: PMC11062440 DOI: 10.1093/plcell/koad326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 11/03/2023] [Accepted: 12/19/2023] [Indexed: 01/03/2024]
Abstract
As an essential nutrient element, phosphorus (P) is primarily acquired and translocated as inorganic phosphate (Pi) by plant roots. Pi is often sequestered in the soil and becomes limited for plant growth. Plants have developed a sophisticated array of adaptive responses, termed P starvation responses, to cope with P deficiency by improving its external acquisition and internal utilization. Over the past 2 to 3 decades, remarkable progress has been made toward understanding how plants sense and respond to changing environmental P. This review provides an overview of the molecular mechanisms that regulate or coordinate P starvation responses, emphasizing P transport, sensing, and signaling. We present the major players and regulators responsible for Pi uptake and translocation. We then introduce how P is perceived at the root tip, how systemic P signaling is operated, and the mechanisms by which the intracellular P status is sensed and conveyed. Additionally, the recent exciting findings about the influence of P on plant-microbe interactions are highlighted. Finally, the challenges and prospects concerning the interplay between P and other nutrients and strategies to enhance P utilization efficiency are discussed. Insights obtained from this knowledge may guide future research endeavors in sustainable agriculture.
Collapse
Affiliation(s)
- Shu-Yi Yang
- Institute of Plant Biology, National Taiwan University, Taipei 106319, Taiwan
| | - Wei-Yi Lin
- Department of Agronomy, National Taiwan University, Taipei 106319, Taiwan
| | - Yi-Min Hsiao
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115201, Taiwan
| | - Tzyy-Jen Chiou
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115201, Taiwan
| |
Collapse
|
2
|
Puga MI, Poza-Carrión C, Martinez-Hevia I, Perez-Liens L, Paz-Ares J. Recent advances in research on phosphate starvation signaling in plants. JOURNAL OF PLANT RESEARCH 2024; 137:315-330. [PMID: 38668956 PMCID: PMC11081996 DOI: 10.1007/s10265-024-01545-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Accepted: 04/17/2024] [Indexed: 05/12/2024]
Abstract
Phosphorus is indispensable for plant growth and development, with its status crucial for determining crop productivity. Plants have evolved various biochemical, morphological, and developmental responses to thrive under conditions of low P availability, as inorganic phosphate (Pi), the primary form of P uptake, is often insoluble in soils. Over the past 25 years, extensive research has focused on understanding these responses, collectively forming the Pi starvation response system. This effort has not only expanded our knowledge of strategies to cope with Pi starvation (PS) but also confirmed their adaptive significance. Moreover, it has identified and characterized numerous components of the intricate regulatory network governing P homeostasis. This review emphasizes recent advances in PS signaling, particularly highlighting the physiological importance of local PS signaling in inhibiting primary root growth and uncovering the role of TORC1 signaling in this process. Additionally, advancements in understanding shoot-root Pi allocation and a novel technique for studying Pi distribution in plants are discussed. Furthermore, emerging data on the regulation of plant-microorganism interactions by the PS regulatory system, crosstalk between the signaling pathways of phosphate starvation, phytohormones and immunity, and recent studies on natural variation in Pi homeostasis are addressed.
Collapse
Affiliation(s)
- María Isabel Puga
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia-CSIC Campus Universidad Autonoma, Darwin 3, Madrid, 28049, Spain
| | - César Poza-Carrión
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia-CSIC Campus Universidad Autonoma, Darwin 3, Madrid, 28049, Spain
| | - Iris Martinez-Hevia
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia-CSIC Campus Universidad Autonoma, Darwin 3, Madrid, 28049, Spain
| | - Laura Perez-Liens
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia-CSIC Campus Universidad Autonoma, Darwin 3, Madrid, 28049, Spain
| | - Javier Paz-Ares
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia-CSIC Campus Universidad Autonoma, Darwin 3, Madrid, 28049, Spain.
| |
Collapse
|
3
|
Kanno S, Nussaume L. Update of phosphate transport regulations. JOURNAL OF PLANT RESEARCH 2024; 137:293-295. [PMID: 38700602 DOI: 10.1007/s10265-024-01544-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2024]
Affiliation(s)
- Satomi Kanno
- Institute for Advanced Research, Nagoya University, 1‑1‑1, Furocho, Chikusaku, Nagoya, Aichi, 464‑8601, Japan
| | - Laurent Nussaume
- Aix Marseille Univ, CEA, CNRS, BIAM, UMR7265, EBMP, 13115, Saint‑Paul Lez Durance, France.
| |
Collapse
|
4
|
Guo M, Ruan W, Li R, Xu L, Hani S, Zhang Q, David P, Ren J, Zheng B, Nussaume L, Yi K. Visualizing plant intracellular inorganic orthophosphate distribution. NATURE PLANTS 2024; 10:315-326. [PMID: 38195907 DOI: 10.1038/s41477-023-01612-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 12/13/2023] [Indexed: 01/11/2024]
Abstract
Intracellular inorganic orthophosphate (Pi) distribution and homeostasis profoundly affect plant growth and development. However, its distribution patterns remain elusive owing to the lack of efficient cellular Pi imaging methods. Here we develop a rapid colorimetric Pi imaging method, inorganic orthophosphate staining assay (IOSA), that can semi-quantitatively image intracellular Pi with high resolution. We used IOSA to reveal the alteration of cellular Pi distribution caused by Pi starvation or mutations that alter Pi homeostasis in two model plants, rice and Arabidopsis, and found that xylem parenchyma cells and basal node sieve tube element cells play a critical role in Pi homeostasis in rice. We also used IOSA to screen for mutants altered in cellular Pi homeostasis. From this, we have identified a novel cellular Pi distribution regulator, HPA1/PHO1;1, specifically expressed in the companion and xylem parenchyma cells regulating phloem Pi translocation from the leaf tip to the leaf base in rice. Taken together, IOSA provides a powerful method for visualizing cellular Pi distribution and facilitates the analysis of Pi signalling and homeostasis from the level of the cell to the whole plant.
Collapse
Affiliation(s)
- Meina Guo
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- State Key Laboratory of Efficient Production of Forest Resources/ National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, People's Republic of China
| | - Wenyuan Ruan
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
| | - Ruili Li
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Lei Xu
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Sahar Hani
- EBMP (Environnement, Bioénergies, Microalgues et Plantes), Aix Marseille Univ, CEA, CNRS, UMR7265, BIAM, Saint-Paul lez Durance, France
| | - Qianqian Zhang
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Pascale David
- EBMP (Environnement, Bioénergies, Microalgues et Plantes), Aix Marseille Univ, CEA, CNRS, UMR7265, BIAM, Saint-Paul lez Durance, France
| | - Jianhao Ren
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Bingsong Zheng
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, China
| | - Laurent Nussaume
- EBMP (Environnement, Bioénergies, Microalgues et Plantes), Aix Marseille Univ, CEA, CNRS, UMR7265, BIAM, Saint-Paul lez Durance, France
| | - Keke Yi
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China/Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
| |
Collapse
|
5
|
Tarkowski ŁP, Clochard T, Blein-Nicolas M, Zivy M, Baillau T, Abadie C, Morère-Le Paven MC, Limami AM, Tcherkez G, Montrichard F. The nitrate transporter-sensor MtNPF6.8 regulates the branched chain amino acid/pantothenate metabolic pathway in barrel medic (Medicago truncatula Gaertn.) root tip. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108213. [PMID: 38043253 DOI: 10.1016/j.plaphy.2023.108213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Revised: 11/02/2023] [Accepted: 11/19/2023] [Indexed: 12/05/2023]
Abstract
Nitrogen is the most limiting nutrient for plants, and it is preferentially absorbed in the form of nitrate by roots, which adapt to nitrate fluctuations by remodelling their architecture. Although core mechanisms of the response to nitrate availability are relatively well-known, signalling events controlling root growth and architecture have not all been identified, in particular in Legumes. However, the developmental effect of nitrate in Legumes is critical since external nitrate not only regulates root architecture but also N2-fixing nodule development. We have previously shown that in barrel medic (Medicago truncatula), the nitrate transporter MtNPF6.8 is required for nitrate sensitivity in root tip. However, uncertainty remains as to whether nitrogen metabolism itself is involved in the MtNPF6.8-mediated response. Here, we examine the metabolic effects of MtNPF6.8-dependent nitrate signalling using metabolomics and proteomics in WT and mtnpf6.8 root tips in presence or absence of nitrate. We found a reorchestration of metabolism due to the mutation, in favour of the branched chain amino acids/pantothenate metabolic pathway, and lipid catabolism via glyoxylate. That is, the mtnpf6.8 mutation was likely associated with a specific rerouting of acetyl-CoA production (glyoxylic cycle) and utilisation (pantothenate and branched chain amino acid synthesis). In agreement with our previous findings, class III peroxidases were confirmed as the main protein class responsive to nitrate, although in an MtNPF6.8-independent fashion. Our data rather suggest the involvement of other pathways within mtnpf6.8 root tips, such as Ca2+ signalling or cell wall methylation.
Collapse
Affiliation(s)
| | | | - Mélisande Blein-Nicolas
- GQE - Le Moulon, Université Paris-Saclay, INRAE, CNRS, AgroParisTech, Gif-sur-Yvette, France
| | - Michel Zivy
- GQE - Le Moulon, Université Paris-Saclay, INRAE, CNRS, AgroParisTech, Gif-sur-Yvette, France
| | - Thierry Baillau
- GQE - Le Moulon, Université Paris-Saclay, INRAE, CNRS, AgroParisTech, Gif-sur-Yvette, France
| | - Cyril Abadie
- Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France
| | | | - Anis M Limami
- Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France
| | - Guillaume Tcherkez
- Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France; Research School of Biology, ANU Joint College of Sciences, Australian National University, Canberra, Australia
| | | |
Collapse
|
6
|
Sadoine M, De Michele R, Župunski M, Grossmann G, Castro-Rodríguez V. Monitoring nutrients in plants with genetically encoded sensors: achievements and perspectives. PLANT PHYSIOLOGY 2023; 193:195-216. [PMID: 37307576 PMCID: PMC10469547 DOI: 10.1093/plphys/kiad337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 05/16/2023] [Accepted: 05/17/2023] [Indexed: 06/14/2023]
Abstract
Understanding mechanisms of nutrient allocation in organisms requires precise knowledge of the spatiotemporal dynamics of small molecules in vivo. Genetically encoded sensors are powerful tools for studying nutrient distribution and dynamics, as they enable minimally invasive monitoring of nutrient steady-state levels in situ. Numerous types of genetically encoded sensors for nutrients have been designed and applied in mammalian cells and fungi. However, to date, their application for visualizing changing nutrient levels in planta remains limited. Systematic sensor-based approaches could provide the quantitative, kinetic information on tissue-specific, cellular, and subcellular distributions and dynamics of nutrients in situ that is needed for the development of theoretical nutrient flux models that form the basis for future crop engineering. Here, we review various approaches that can be used to measure nutrients in planta with an overview over conventional techniques, as well as genetically encoded sensors currently available for nutrient monitoring, and discuss their strengths and limitations. We provide a list of currently available sensors and summarize approaches for their application at the level of cellular compartments and organelles. When used in combination with bioassays on intact organisms and precise, yet destructive analytical methods, the spatiotemporal resolution of sensors offers the prospect of a holistic understanding of nutrient flux in plants.
Collapse
Affiliation(s)
- Mayuri Sadoine
- Institute of Cell and Interaction Biology, Heinrich-Heine Universität Düsseldorf, Düsseldorf 40225, Germany
| | - Roberto De Michele
- Institute of Biosciences and Bioresources, National Research Council of Italy, Palermo 90129, Italy
| | - Milan Župunski
- Institute of Cell and Interaction Biology, Heinrich-Heine Universität Düsseldorf, Düsseldorf 40225, Germany
| | - Guido Grossmann
- Institute of Cell and Interaction Biology, Heinrich-Heine Universität Düsseldorf, Düsseldorf 40225, Germany
- Cluster of Excellence on Plant Sciences, Heinrich-Heine Universität Düsseldorf, Düsseldorf 40225, Germany
| | - Vanessa Castro-Rodríguez
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Málaga 29071, Spain
| |
Collapse
|
7
|
Geng Z, Chen J, Lu B, Zhang F, Chen Z, Liu Y, Xia C, Huang J, Zhang C, Zha M, Xu C. A Review: Systemic Signaling in the Regulation of Plant Responses to Low N, P and Fe. PLANTS (BASEL, SWITZERLAND) 2023; 12:2765. [PMID: 37570919 PMCID: PMC10420978 DOI: 10.3390/plants12152765] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 07/04/2023] [Accepted: 07/06/2023] [Indexed: 08/13/2023]
Abstract
Plant signal transduction occurs in response to nutrient element deficiency in plant vascular tissue. Recent works have shown that the vascular tissue is a central regulator in plant growth and development by transporting both essential nutritional and long-distance signaling molecules between different parts of the plant's tissues. Split-root and grafting studies have deciphered the importance of plants' shoots in receiving root-derived nutrient starvation signals from the roots. This review assesses recent studies about vascular tissue, integrating local and systemic long-distance signal transduction and the physiological regulation center. A substantial number of studies have shown that the vascular tissue is a key component of root-derived signal transduction networks and is a regulative center involved in plant elementary nutritional deficiency, including nitrogen (N), phosphate (P), and iron (Fe).
Collapse
Affiliation(s)
- Zhi Geng
- Department of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
| | - Jun Chen
- Anhui Science and Technology Achievement Transformation Promotion Center, Anhui Provincial Institute of Science and Technology, Hefei 230002, China
| | - Bo Lu
- Department of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
| | - Fuyuan Zhang
- Anhui Science and Technology Achievement Transformation Promotion Center, Anhui Provincial Institute of Science and Technology, Hefei 230002, China
| | - Ziping Chen
- Anhui Science and Technology Achievement Transformation Promotion Center, Anhui Provincial Institute of Science and Technology, Hefei 230002, China
| | - Yujun Liu
- Anhui Science and Technology Achievement Transformation Promotion Center, Anhui Provincial Institute of Science and Technology, Hefei 230002, China
| | - Chao Xia
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Jing Huang
- Department of Agronomy, Center for Plant Biology, Purdue University, 915 West State St., West Lafayette, IN 47907, USA
| | - Cankui Zhang
- Department of Agronomy, Center for Plant Biology, Purdue University, 915 West State St., West Lafayette, IN 47907, USA
| | - Manrong Zha
- College of Biology Resources and Environmental Sciences, Jishou University, Jishou 416000, China
| | - Congshan Xu
- Department of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
- Anhui Science and Technology Achievement Transformation Promotion Center, Anhui Provincial Institute of Science and Technology, Hefei 230002, China
| |
Collapse
|
8
|
Raven JA. Avoiding and allowing apatite precipitation in oxygenic photolithotrophs. THE NEW PHYTOLOGIST 2023; 238:1801-1812. [PMID: 36856343 DOI: 10.1111/nph.18849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 02/24/2023] [Indexed: 05/04/2023]
Abstract
The essential elements Ca and P, taken up and used metabolically as Ca2+ and H2 PO4 - /HPO4 2- respectively, could precipitate as one or more of the insoluble forms calcium phosphate (mainly apatite) if the free ion concentrations and pH are high enough. In the cytosol, chloroplast stroma, and mitochondrial matrix, the very low free Ca2+ concentration avoids calcium phosphate precipitation, apart from occasionally in the mitochondrial matrix. The low free Ca2+ concentration in these compartments is commonly thought of in terms of the role of Ca2+ in signalling. However, it also helps avoids calcium phosphate precipitation, and this could be its earliest function in evolution. In vacuoles, cell walls, and xylem conduits, there can be relatively high concentrations of Ca2+ and inorganic orthophosphate, but pH and/or other ligands for Ca2+ , suggests that calcium phosphate precipitates are rare. However, apatite is precipitated under metabolic control in shoot trichomes, and by evaporative water loss in hydathodes, in some terrestrial flowering plants. In aquatic macrophytes that deposit CaCO3 on their cell walls or in their environment as a result of pH increase or removal of inhibitors of nucleation or crystal growth, phosphate is sometimes incorporated in the CaCO3 . Calcium phosphate precipitation also occurs in some stromatolites.
Collapse
Affiliation(s)
- John A Raven
- Division of Plant Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- Climate Change Cluster, Faculty of Science, University of Technology, Sydney, Ultimo, NSW, 2007, Australia
- School of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia
| |
Collapse
|
9
|
Zhang S, Daniels DA, Ivanov S, Jurgensen L, Müller LM, Versaw WK, Harrison MJ. A genetically encoded biosensor reveals spatiotemporal variation in cellular phosphate content in Brachypodium distachyon mycorrhizal roots. THE NEW PHYTOLOGIST 2022; 234:1817-1831. [PMID: 35274313 PMCID: PMC9790424 DOI: 10.1111/nph.18081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
Arbuscular mycorrhizal (AM) symbiosis is accompanied by alterations to root cell metabolism and physiology, and to the pathways of orthophosphate (Pi) entry into the root, which increase with Pi delivery to cortical cells via arbuscules. How AM symbiosis influences the Pi content and Pi response dynamics of cells in the root cortex and epidermis is unknown. Using fluorescence resonance energy transfer (FRET)-based Pi biosensors, we mapped the relative cytosolic and plastidic Pi content of Brachypodium distachyon mycorrhizal root cells, analyzed responses to extracellular Pi and traced extraradical hyphae-mediated Pi transfer to colonized cells. Colonized cortical cells had a higher cytosolic Pi content relative to noncolonized cortical and epidermal cells, while plastidic Pi content was highest in cells at the infection front. Pi application to the entire mycorrhizal root resulted in transient changes in cytosolic Pi that differed in direction and magnitude depending on cell type and arbuscule status; cells with mature arbuscules showed a substantial transient increase in cytosolic Pi while those with collapsed arbuscules showed a decrease. Directed Pi application to extraradical hyphae resulted in measurable changes in cytosolic Pi of colonized cells 18 h after application. Our experiments reveal that cells within a mycorrhizal root vary in Pi content and Pi response dynamics.
Collapse
Affiliation(s)
- Shiqi Zhang
- Boyce Thompson Institute533 Tower RoadIthacaNY14853USA
| | | | - Sergey Ivanov
- Boyce Thompson Institute533 Tower RoadIthacaNY14853USA
| | | | | | - Wayne K. Versaw
- Department of BiologyTexas A&M UniversityCollege StationTX77843USA
| | | |
Collapse
|
10
|
Zang L, Tarkowski ŁP, Morère-Le Paven MC, Zivy M, Balliau T, Clochard T, Bahut M, Balzergue S, Pelletier S, Landès C, Limami AM, Montrichard F. The Nitrate Transporter MtNPF6.8 Is a Master Sensor of Nitrate Signal in the Primary Root Tip of Medicago truncatula. FRONTIERS IN PLANT SCIENCE 2022; 13:832246. [PMID: 35371178 PMCID: PMC8971838 DOI: 10.3389/fpls.2022.832246] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 02/22/2022] [Indexed: 06/12/2023]
Abstract
Nitrate is not only an essential nutrient for plants, but also a signal involved in plant development. We have previously shown in the model legume Medicago truncatula, that the nitrate signal, which restricts primary root growth, is mediated by MtNPF6.8, a nitrate transporter. Nitrate signal also induces changes in reactive oxygen species accumulation in the root tip due to changes in cell wall peroxidase (PODs) activity. Thus, it was interesting to determine the importance of the role of MtNPF6.8 in the regulation of the root growth by nitrate and identify the POD isoforms responsible for the changes in POD activity. For this purpose, we compared in M. truncatula a npf6.8 mutant and nitrate insensitive line deficient in MtNPF6.8 and the corresponding wild and sensitive genotype for their transcriptomic and proteomic responses to nitrate. Interestingly, only 13 transcripts and no protein were differently accumulated in the primary root tip of the npf6.8-3 mutant line in response to nitrate. The sensitivity of the primary root tip to nitrate appeared therefore to be strongly linked to the integrity of MtNPF6.8 which acts as a master mediator of the nitrate signal involved in the control of the root system architecture. In parallel, 7,259 and 493 genes responded, respectively, at the level of transcripts or proteins in the wild type, 196 genes being identified by both their transcript and protein. By focusing on these 196 genes, a concordance of expression was observed for most of them with 143 genes being up-regulated and 51 being down-regulated at the two gene expression levels. Their ontology analysis uncovered a high enrichment in POD genes, allowing the identification of POD candidates involved in the changes in POD activity previously observed in response to nitrate.
Collapse
Affiliation(s)
- Lili Zang
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | | | | | - Michel Zivy
- PAPPSO, GQE – Le Moulon, INRA, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Thierry Balliau
- PAPPSO, GQE – Le Moulon, INRA, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Thibault Clochard
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | | | - Sandrine Balzergue
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | - Sandra Pelletier
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | - Claudine Landès
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | - Anis M. Limami
- Institut Agro, INRAE, IRHS, SFR QUASAV, Université d’Angers, Angers, France
| | | |
Collapse
|
11
|
Ravelo-Ortega G, Pelagio-Flores R, López-Bucio J, Campos-García J, Reyes de la Cruz H, López-Bucio JS. Early sensing of phosphate deprivation triggers the formation of extra root cap cell layers via SOMBRERO through a process antagonized by auxin signaling. PLANT MOLECULAR BIOLOGY 2022; 108:77-91. [PMID: 34855067 DOI: 10.1007/s11103-021-01224-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 11/18/2021] [Indexed: 06/13/2023]
Abstract
The role of the root cap in the plant response to phosphate deprivation has been scarcely investigated. Here we describe early structural, physiological and molecular changes prior to the determinate growth program of the primary roots under low Pi and unveil a critical function of the transcription factor SOMBRERO in low Pi sensing. Mineral nutrient distribution in the soil is uneven and roots efficiently adapt to improve uptake and assimilation of sparingly available resources. Phosphate (Pi) accumulates in the upper layers and thus short and branched root systems proliferate to better exploit organic and inorganic Pi patches. Here we report an early adaptive response of the Arabidopsis primary root that precedes the entrance of the meristem into the determinate developmental program that is a hallmark of the low Pi sensing mechanism. In wild-type seedlings transferred to low Pi medium, the quiescent center domain in primary root tips increases as an early response, as revealed by WOX5:GFP expression and this correlates with a thicker root tip with extra root cap cell layers. The halted primary root growth in WT seedlings could be reversed upon transfer to medium supplemented with 250 µM Pi. Mutant and gene expression analysis indicates that auxin signaling negatively affects the cellular re-specification at the root tip and enabled identification of the transcription factor SOMBRERO as a critical element that orchestrates both the formation of extra root cap layers and primary root growth under Pi scarcity. Moreover, we provide evidence that low Pi-induced root thickening or the loss-of-function of SOMBRERO is associated with expression of phosphate transporters at the root tip. Our data uncover a developmental window where the root tip senses deprivation of a critical macronutrient to improve adaptation and surveillance.
Collapse
Affiliation(s)
- Gustavo Ravelo-Ortega
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México
| | - Ramón Pelagio-Flores
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México
| | - Jesús Campos-García
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México
| | - Homero Reyes de la Cruz
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México
| | - Jesús Salvador López-Bucio
- CONACYT-Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Edificio B1, Ciudad Universitaria, C.P. 58030, Morelia, Michoacán, México.
| |
Collapse
|
12
|
Wang Z, Kuo HF, Chiou TJ. Intracellular phosphate sensing and regulation of phosphate transport systems in plants. PLANT PHYSIOLOGY 2021; 187:2043-2055. [PMID: 35235674 PMCID: PMC8644344 DOI: 10.1093/plphys/kiab343] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 06/29/2021] [Indexed: 05/04/2023]
Abstract
Recent research on the regulation of cellular phosphate (Pi) homeostasis in eukaryotes has collectively made substantial advances in elucidating inositol pyrophosphates (PP-InsP) as Pi signaling molecules that are perceived by the SPX (Syg1, Pho81, and Xpr1) domains residing in multiple proteins involved in Pi transport and signaling. The PP-InsP-SPX signaling module is evolutionarily conserved across eukaryotes and has been elaborately adopted in plant Pi transport and signaling systems. In this review, we have integrated these advances with prior established knowledge of Pi and PP-InsP metabolism, intracellular Pi sensing, and transcriptional responses according to the dynamics of cellular Pi status in plants. Anticipated challenges and pending questions as well as prospects are also discussed.
Collapse
Affiliation(s)
- Zhengrui Wang
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Hui-Fen Kuo
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Tzyy-Jen Chiou
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan
- Author for communication:
| |
Collapse
|
13
|
Jia X, Wang L, Zeng H, Yi K. Insights of intracellular/intercellular phosphate transport and signaling in unicellular green algae and multicellular land plants. THE NEW PHYTOLOGIST 2021; 232:1566-1571. [PMID: 34482553 DOI: 10.1111/nph.17716] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 08/20/2021] [Indexed: 05/18/2023]
Abstract
Phosphorus (P) is an essential element for plant growth and development. Vacuoles play a fundamental role in the storage and remobilization of P in plants, while our understanding of the evolutionary mechanisms of creating and reusing P stores are limited. Besides, we also know very little about the coordination of intercellular P translocation, neither the inorganic phosphate (Pi) signaling nor the Pi transport patterns. Here we summarize recent advances in understanding the core elements involved in cellular and/or subcellular P homeostasis and signaling in unicellular green algae and multicellular land plants. We also propose further work that might help to uncover the high-resolution intracellular and intercellular landscape of Pi distribution and signaling in plants.
Collapse
Affiliation(s)
- Xianqing Jia
- Key Laboratory of Plant Nutrition and Fertilizers, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Long Wang
- Key Laboratory of Plant Nutrition and Fertilizers, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Houqing Zeng
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 311121, China
| | - Keke Yi
- Key Laboratory of Plant Nutrition and Fertilizers, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| |
Collapse
|
14
|
Smith EN, Schwarzländer M, Ratcliffe RG, Kruger NJ. Shining a light on NAD- and NADP-based metabolism in plants. TRENDS IN PLANT SCIENCE 2021; 26:1072-1086. [PMID: 34281784 DOI: 10.1016/j.tplants.2021.06.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Revised: 06/16/2021] [Accepted: 06/17/2021] [Indexed: 05/20/2023]
Abstract
The pyridine nucleotides nicotinamide adenine dinucleotide [NAD(H)] and nicotinamide adenine dinucleotide phosphate [NADP(H)] simultaneously act as energy transducers, signalling molecules, and redox couples. Recent research into photosynthetic optimisation, photorespiration, immunity, hypoxia/oxygen signalling, development, and post-harvest metabolism have all identified pyridine nucleotides as key metabolites. Further understanding will require accurate description of NAD(P)(H) metabolism, and genetically encoded fluorescent biosensors have recently become available for this purpose. Although these biosensors have begun to provide novel biological insights, their limitations must be considered and the information they provide appropriately interpreted. We provide a framework for understanding NAD(P)(H) metabolism and explore what fluorescent biosensors can, and cannot, tell us about plant biology, looking ahead to the pressing questions that could be answered with further development of these tools.
Collapse
Affiliation(s)
- Edward N Smith
- Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK; Current address: Department of Molecular Systems Biology, University of Groningen, 9747 AG Groningen, The Netherlands.
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | | | - Nicholas J Kruger
- Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK
| |
Collapse
|
15
|
Lhamo D, Luan S. Potential Networks of Nitrogen-Phosphorus-Potassium Channels and Transporters in Arabidopsis Roots at a Single Cell Resolution. FRONTIERS IN PLANT SCIENCE 2021; 12:689545. [PMID: 34220911 PMCID: PMC8242960 DOI: 10.3389/fpls.2021.689545] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 05/24/2021] [Indexed: 05/08/2023]
Abstract
Nitrogen (N), phosphorus (P), and potassium (K) are three major macronutrients essential for plant life. These nutrients are acquired and transported by several large families of transporters expressed in plant roots. However, it remains largely unknown how these transporters are distributed in different cell-types that work together to transfer the nutrients from the soil to different layers of root cells and eventually reach vasculature for massive flow. Using the single cell transcriptomics data from Arabidopsis roots, we profiled the transcriptional patterns of putative nutrient transporters in different root cell-types. Such analyses identified a number of uncharacterized NPK transporters expressed in the root epidermis to mediate NPK uptake and distribution to the adjacent cells. Some transport genes showed cortex- and endodermis-specific expression to direct the nutrient flow toward the vasculature. For long-distance transport, a variety of transporters were shown to express and potentially function in the xylem and phloem. In the context of subcellular distribution of mineral nutrients, the NPK transporters at subcellular compartments were often found to show ubiquitous expression patterns, which suggests function in house-keeping processes. Overall, these single cell transcriptomic analyses provide working models of nutrient transport from the epidermis across the cortex to the vasculature, which can be further tested experimentally in the future.
Collapse
Affiliation(s)
- Dhondup Lhamo
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
| | | |
Collapse
|
16
|
Dissanayaka DMSB, Ghahremani M, Siebers M, Wasaki J, Plaxton WC. Recent insights into the metabolic adaptations of phosphorus-deprived plants. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:199-223. [PMID: 33211873 DOI: 10.1093/jxb/eraa482] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Accepted: 10/13/2020] [Indexed: 06/11/2023]
Abstract
Inorganic phosphate (Pi) is an essential macronutrient required for many fundamental processes in plants, including photosynthesis and respiration, as well as nucleic acid, protein, and membrane phospholipid synthesis. The huge use of Pi-containing fertilizers in agriculture demonstrates that the soluble Pi levels of most soils are suboptimal for crop growth. This review explores recent advances concerning the understanding of adaptive metabolic processes that plants have evolved to alleviate the negative impact of nutritional Pi deficiency. Plant Pi starvation responses arise from complex signaling pathways that integrate altered gene expression with post-transcriptional and post-translational mechanisms. The resultant remodeling of the transcriptome, proteome, and metabolome enhances the efficiency of root Pi acquisition from the soil, as well as the use of assimilated Pi throughout the plant. We emphasize how the up-regulation of high-affinity Pi transporters and intra- and extracellular Pi scavenging and recycling enzymes, organic acid anion efflux, membrane remodeling, and the remarkable flexibility of plant metabolism and bioenergetics contribute to the survival of Pi-deficient plants. This research field is enabling the development of a broad range of innovative and promising strategies for engineering phosphorus-efficient crops. Such cultivars are urgently needed to reduce inputs of unsustainable and non-renewable Pi fertilizers for maximum agronomic benefit and long-term global food security and ecosystem preservation.
Collapse
Affiliation(s)
- D M S B Dissanayaka
- Department of Crop Science, Faculty of Agriculture, University of Peradeniya, Peradeniya, Sri Lanka
- Graduate School of Biosphere Science, Hiroshima University, Kagamiyama, Higashi-Hiroshima, Japan
| | - Mina Ghahremani
- Department of Biology, University of Ottawa, Ottawa, Ontario, Canada
| | - Meike Siebers
- Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg, Cologne, Germany
- Institute of Plant Genetics, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Jun Wasaki
- Graduate School of Biosphere Science, Hiroshima University, Kagamiyama, Higashi-Hiroshima, Japan
- Graduate School of Integrated Sciences for Life, Hiroshima University, Kagamiyama, Higashi-Hiroshima, Japan
| | - William C Plaxton
- Department of Biology, Queen's University, Kingston, Ontario, Canada
| |
Collapse
|