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Willendrup PK, Lefmann K. McStas (ii): An overview of components, their use, and advice for user contributions. JOURNAL OF NEUTRON RESEARCH 2021. [DOI: 10.3233/jnr-200186] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
A key element of the success of McStas is the component layer where users and developers alike are contributing to the description of new physical models and features. In McStas, components realise all physical elements of the simulated instrument from source via optics and samples to detector. In this second review paper of the McStas package, we present an overview of the component classes in McStas: sources, monitors, optics, samples, misc, and contrib. Within each component class we give thorough examples of high-quality components, including their algorithms and example use. We present two example instruments, one for a continuous source and one for a time-of-flight source, that together demonstrate the use of the main component classes. Finally, we give tips and instructions that will allow the reader to write good components and elucidate the pathway of contributing new components to McStas.
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Affiliation(s)
- Peter Kjær Willendrup
- Department of Physics, Technical University of Denmark, Denmark. E-mail:
- Data Management and Software Center, European Spallation Source, Denmark
| | - Kim Lefmann
- Niels Bohr Institute, University of Copenhagen, Denmark. E-mail:
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Ramos L, Banc A, Louhichi A, Pincemaille J, Jestin J, Fu Z, Appavou MS, Menut P, Morel MH. Impact of the protein composition on the structure and viscoelasticity of polymer-like gluten gels. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:144001. [PMID: 33494081 DOI: 10.1088/1361-648x/abdf91] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 01/25/2021] [Indexed: 06/12/2023]
Abstract
We investigate the structure of gluten polymer-like gels in a binary mixture of water/ethanol, 50/50 v/v, a good solvent for gluten proteins. Gluten comprises two main families of proteins, monomeric gliadins and polymer glutenins. In the semi-dilute regime, scattering experiments highlight two classes of behavior, akin to standard polymer solution and polymer gel, depending on the protein composition. We demonstrate that these two classes are encoded in the structural features of the proteins in very dilute solution, and are correlated with the presence of proteins assemblies of typical size tens of nanometers. The assemblies only exist when the protein mixture is sufficiently enriched in glutenins. They are found directly associated to the presence in the gel of domains enriched in non-exchangeable H-bonds and of size comparable to that of the protein assemblies. The domains are probed in neutron scattering experiments thanks to their unique contrast. We show that the sample visco-elasticity is also directly correlated to the quantity of domains enriched in H-bonds, showing the key role of H-bonds in ruling the visco-elasticity of polymer gluten gels.
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Affiliation(s)
- Laurence Ramos
- Laboratoire Charles Coulomb (L2C), Univ. Montpellier, CNRS, Montpellier, France
| | - Amélie Banc
- Laboratoire Charles Coulomb (L2C), Univ. Montpellier, CNRS, Montpellier, France
| | - Ameur Louhichi
- Laboratoire Charles Coulomb (L2C), Univ. Montpellier, CNRS, Montpellier, France
| | - Justine Pincemaille
- Laboratoire Charles Coulomb (L2C), Univ. Montpellier, CNRS, Montpellier, France
- Ingénierie des Agro-polymères et Technologies Emergentes (IATE), Univ. Montpellier, CIRAD, INRAE, Montpellier SupAgro, Montpellier, France
| | - Jacques Jestin
- Laboratoire Léon Brillouin, UMR 12, Université Paris-Saclay, IRAMIS/CEA Saclay, 91191 Gif-sur-Yvette Cedex, France
| | - Zhendong Fu
- Forschungszentrum Jülich GmbH, JCNS am MLZ Lichtenbergstr. 1, 85748 Garching, Germany
| | - Marie-Sousai Appavou
- Forschungszentrum Jülich GmbH, JCNS am MLZ Lichtenbergstr. 1, 85748 Garching, Germany
| | - Paul Menut
- Ingénierie des Agro-polymères et Technologies Emergentes (IATE), Univ. Montpellier, CIRAD, INRAE, Montpellier SupAgro, Montpellier, France
- Université Paris-Saclay, INRAE, AgroParisTech, UMR SayFood, 91300 Massy, France
| | - Marie-Hélène Morel
- Ingénierie des Agro-polymères et Technologies Emergentes (IATE), Univ. Montpellier, CIRAD, INRAE, Montpellier SupAgro, Montpellier, France
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Advanced Small-Angle Scattering Instrument Available in the Tokyo Area. Time-Of-Flight, Small-Angle Neutron Scattering Developed on the iMATERIA Diffractometer at the High Intensity Pulsed Neutron Source J-PARC. QUANTUM BEAM SCIENCE 2020. [DOI: 10.3390/qubs4040042] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
A method of time-of-flight, small-angle neutron scattering (TOF-SANS) has been developed based on the iMATERIA powder diffractometer at BL20, of the Materials and Life Sciences Facility (MLF) at the high-intensity proton accelerator (J-PARC). A large-area detector for SANS, which is composed of triple-layered 3He tube detectors, has a hole at its center in order to release a direct beam behind and to detect ultra-small-angle scattering. As a result, the pulsed-neutron TOF method enables us to perform multiscale observations covering 0.003 < q (Å−1) < 40 (qmax/qmix = 1.3 × 104) and to determine the static structure factor S(q) and/or form factor P(q) under real-time and in-situ conditions. Our challenge, using unique sample accessories of a super-conducting magnet and polarized neutron, is dynamic nuclear polarization (DNP) for contrast variation, especially for industrial use. To reinforce conventional SANS measurements with powder materials, grazing-incidence small-angle neutron scattering (GISANS) or reflectivity is also available on the iMATERIA instrument.
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Willendrup PK, Lefmann K. McStas (i): Introduction, use, and basic principles for ray-tracing simulations. JOURNAL OF NEUTRON RESEARCH 2020. [DOI: 10.3233/jnr-190108] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Affiliation(s)
- Peter Kjær Willendrup
- Department of Physics, Technical University of Denmark, Denmark. E-mail:
- Data Management and Software Center, European Spallation Source, Denmark
| | - Kim Lefmann
- Niels Bohr Institute, University of Copenhagen, Denmark. E-mail:
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Koizumi S, Zhao Y, Putra A. Hierarchical structure of microbial cellulose and marvelous water uptake, investigated by combining neutron scattering instruments at research reactor JRR-3, Tokai. POLYMER 2019. [DOI: 10.1016/j.polymer.2019.05.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Koizumi S, Annaka M, Schwahn D. Necklace-like microstructure in shallow-quenched aqueous solutions of poly(n-isopropylacrylamide), detected by advanced small-angle neutron scattering methods. SOFT MATTER 2019; 15:671-682. [PMID: 30623191 DOI: 10.1039/c8sm02416b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The microstructure of aqueous poly(N-isopropyl acrylamide) (PNIPA) gel and solution was investigated by small-angle neutron scattering (SANS) in the vicinity of the gel volume phase transition at TV (= 34 °C). The SANS technique was reinforced by refractive neutron lenses and perfect single crystals in order to get access to μm length scales. At 31 °C SANS shows Ornstein-Zernike (OZ) type scattering in the swollen gel which at 32 °C starts to deviate from the OZ-formalism, exhibiting excess scattering and at the wave number qc≅ 5 × 10-3Å-1 a crossover to Porod's asymptotic q-4 power law. For shallow quenches of ΔT < 1.0 K above TV the excess scattering intensity is further increasing whereas qc is shifting toward lower values. Based on this observation and analysis of the SANS q-profiles, we propose a necklace-like microstructure consisting of PNIPA-rich globules of R≅ 100 Å size which are connected by swollen PNIPA chains and stabilized for more than a day by pinning of chain connectivity. The formation of PNIPA globules near TV is discussed in terms of partially cooperative dehydration which is crucial to explain the "miscibility square phase behavior" of aqueous PNIPA solutions. Globule-like structure was also found in aqueous PNIPA solution of size slightly larger than in gels. At deeper quenches of gels above TV (ΔT > 1.0 K) the globules are aggregating to larger objects of R≅ 0.24 μm size as determined from a strong intensity upturn in the small q-region of USANS.
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Affiliation(s)
- Satoshi Koizumi
- Research Group of Living Soft matter, Institute of Quantum Beam Science, Ibaraki University, 319-1106, Japan.
| | - Masahiko Annaka
- Department of Chemistry, Kyushu University, Fukuoka 812-8581, Japan
| | - Dietmar Schwahn
- Technische Universität München, Forschungs-Neutronenquelle Heinz Maier-Leibnitz (FRM II), D-85748 Garching, Germany
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Chen L, Sun L, Wang Y, Wang Y, Zou L, Yan G, Chen J, Tian Q, Peng M, Gong J, Chen B, Sun G, Liu D. Small-angle neutron scattering spectrometer Suanni equipped with ultra-thin biconcave focusing lenses. J Appl Crystallogr 2016. [DOI: 10.1107/s1600576716007950] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The small-angle neutron scattering (SANS) spectrometer Suanni at the liquid hydrogen cold neutron source of the 20 MW China Mianyang Research Reactor has recently been upgraded. Ultra-thin biconcave MgF2lenses with a central thickness down to 0.2 mm have been installed between the collimator chamber and the sample stage. The lenses are able to improve the flux without too excessive an increase in the neutron beam size on the detector. A smaller minimumQ(Qmin) can be obtained by decreasing the beam size without changing the total length of the spectrometer. By testing the central beam profiles under different neutron wavelengths (∼0.56–1 nm) with both traditional pinhole SANS (PSANS) and focusing SANS (FSANS) geometries, the gain factor thanks to the neutron lenses is about one order of magnitude. Given the loss of intensity due to the absorption of neutrons by the lenses, the benefits of the focusing can only be realized if it is possible to increase the aperture size. With an identical source aperture, FSANS can minimize the nominalQminfrom 7.20 × 10−3 nm−1(for PSANS) to 5.55 × 10−3 nm−1at a neutron wavelength of 1 nm. The practical benefit provided by the lenses is verified with a solution of poly(methyl methacrylate) nanospheres, which yields a scattering intensity one order of magnitude higher and a better resolution with the FSANS geometry than with that of PSANS.
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Dahdal Y, Pipich V, Rapaport H, Oren Y, Kasher R, Schwahn D. Small-angle neutron scattering studies of alginate as biomineralizing agent and scale initiator. POLYMER 2016. [DOI: 10.1016/j.polymer.2016.01.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Feoktystov AV, Frielinghaus H, Di Z, Jaksch S, Pipich V, Appavou MS, Babcock E, Hanslik R, Engels R, Kemmerling G, Kleines H, Ioffe A, Richter D, Brückel T. KWS-1 high-resolution small-angle neutron scattering instrument at JCNS: current state. J Appl Crystallogr 2015. [DOI: 10.1107/s1600576714025977] [Citation(s) in RCA: 114] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The KWS-1 small-angle neutron scattering (SANS) instrument operated by the Jülich Centre for Neutron Science (JCNS) at the research reactor FRM II of the Heinz Maier-Leibnitz Zentrum in Garching near Munich has been recently upgraded. The KWS-1 instrument was updated, from its active collimation apertures to the detector cabling. Most of the parts of the instrument were installed for the first time, including a broadband polarizer, a large-cross-section radio-frequency spin flipper, a chopper and neutron lenses. A custom-designed hexapod in the sample position allows heavy loads and precise sample positioning in the beam for conventional SANS experiments as well as for grazing-incidence SANS under applied magnetic field. With the foreseenin situpolarization analysis the main scientific topic of the instrument tends towards magnetism. The performance of the polarizer and flipper was checked with a polarized3He cell at the sample position. The results of these checks and a comparison of test measurements on a ferrofluid in a magnetic field with polarized and nonpolarized neutrons are presented.
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Dahdal YN, Pipich V, Rapaport H, Oren Y, Kasher R, Schwahn D. Small-angle neutron scattering studies of mineralization on BSA coated citrate capped gold nanoparticles used as a model surface for membrane scaling in RO wastewater desalination. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:15072-15082. [PMID: 25458085 DOI: 10.1021/la502706k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Bovine serum albumin (BSA) coated on citrate capped gold nanoparticles (BSA-GNPs) was exposed to a simulated wastewater effluent (SSE) in order to study the mineralization and thereby mimic scaling at biofouled membranes of reverse osmosis (RO) wastewater desalination plants. RO is a leading technology of achieving freshwater quality as it has the capability of removing both dissolved inorganic salts and organic contaminants from tertiary wastewater effluents. The aim was to better understand one of the major problems facing this technology which is fouling of the membranes, mainly biofouling and scaling by calcium phosphate. The experiments were performed using the small-angle neutron scattering (SANS) technique. The nanoparticles, GNPs, stabilized by the citrate groups showed 30 Å large particles having a homogeneous distribution of gold and citrate with a gold volume fraction of the order of 1%. On the average two BSA monomers are grafted at 2.4 GNPs. The exposed BSA-GNPs to SSE solution led to immediate mineralization of stable composite particles of the order of 0.2 μm diameter and a mineral volume fraction between 50% and 80%. The volume fraction of the mineral was of the order of 10(-5), which is roughly 3 times larger but an order of magnitude smaller than the maximum possible contents of respectively calcium phosphate and calcium carbonate in the SSE solution. Considering the extreme low solubility product of calcium phosphate, we suggest total calcium phosphate and partially (5-10%) calcium carbonate formation in the presence of BSA-GNPs.
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Affiliation(s)
- Y N Dahdal
- Zuckerberg Institute for Water Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev , Sede Boqer Campus, Beer-Sheva 8499000, Israel
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Guo J, Takeda S, Morita SY, Hino M, Oda T, Kato JI, Yamagata Y, Furusaka M. New fabrication method for an ellipsoidal neutron focusing mirror with a metal substrate. OPTICS EXPRESS 2014; 22:24666-24677. [PMID: 25322041 DOI: 10.1364/oe.22.024666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We propose an ellipsoidal neutron focusing mirror using a metal substrate made with electroless nickel-phosphorus (NiP) plated material for the first time. Electroless NiP has great advantages for realizing an ellipsoidal neutron mirror because of its amorphous structure, good machinability and relatively large critical angle of total reflection for neutrons. We manufactured the mirror by combining ultrahigh precision cutting and fine polishing to generate high form accuracy and low surface roughness. The form accuracy of the mirror was estimated to be 5.3 μm P-V and 0.8 μm P-V for the minor-axis and major-axis direction respectively, while the surface roughness was reduced to 0.2 nm rms. The effect of form error on focusing spot size was evaluated by using a laser beam and the focusing performance of the mirror was verified by neutron experiments.
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Mildner DFR. Resolution of small-angle neutron scattering with a reflective focusing optic. J Appl Crystallogr 2014. [DOI: 10.1107/s1600576714011364] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
A small-angle neutron scattering instrument that uses a reflective focusing optic can achieve smaller values of the scattering vector, and with higher resolution, than the usual pinhole collimation. When the focusing mirror images the source onto the detector, the analytic expression for the resolution is independent of the sample area and is principally determined by the beam divergence incident on the sample, modified by the distance between the optic and the sample. The results are applied to a focusing SANS instrument with axisymmetric mirrors.
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Pipich V, Dahdal Y, Rapaport H, Kasher R, Oren Y, Schwahn D. Effects of biological molecules on calcium mineral formation associated with wastewater desalination as assessed using small-angle neutron scattering. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:7607-7617. [PMID: 23701483 DOI: 10.1021/la4001889] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Calcium phosphate scale formation on reverse osmosis (RO) membranes is one of the main limitations on cost-effective desalination of domestic wastewater worldwide. It has been shown that organic agents affect mineralization. In this study, we explored mineralization in the presence of two biofilm-relevant organic compounds, the proteins bovine serum albumin (BSA) and lysozyme, in a simulated secondary effluent (SSE) solution using small-angle neutron scattering (SANS), and applied the results to analyses of mineral precipitation in RO desalination of secondary effluents of wastewater. The two proteins are prominent members of bacterial extracellular polymeric substances (EPSs), forming biofilms that are frequently associated with RO-membrane fouling during wastewater desalination. Laboratory experiments showed that both proteins in SSE solution are involved in complex mineralization processes. Only small portions of both protein fractions are involved in mineralization processes, whereas most of the protein fractions remain as monomers in solution. Contrast variation showed that composite particles of mineral and protein are formed instantaneously to a radius of gyration of about 300 Å, coexisting with particles of about μm size. After about one day, these large particles start to grow again at the expense of the 300 Å particles. The volume fraction of the 300 Å particles is of the order of 2 × 10(-4), which is too large to represent calcium phosphate such as hydroxyapatite as the only mineral present. Considering the data of mineral volume fraction obtained here as well as the solubility product of possible mineral polymorphs in the SSE solution, we suggest the formation of protein-mineral particles of hydroxyapatite and calcium carbonate during scale formation.
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Affiliation(s)
- Vitaliy Pipich
- Jülich Centre for Neutron Science JCNS-FRM II, Outstation at FRM II, D-85747 Garching, Lichtenbergstrasse 1, Germany
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Radulescu A, Pipich V, Frielinghaus H, Appavou MS. KWS-2, the high intensity / wideQ-range small-angle neutron diffractometer for soft-matter and biology at FRM II. ACTA ACUST UNITED AC 2012. [DOI: 10.1088/1742-6596/351/1/012026] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Schwahn D, Pipich V, Richter D. Composition and Long-Range Density Fluctuations in PEO/PMMA Polymer Blends: A Result of Asymmetric Component Mobility. Macromolecules 2012. [DOI: 10.1021/ma2019123] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dietmar Schwahn
- Jülich Centre for Neutron
Science JCNS and Institute for Complex Systems ICS, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
| | - Vitaliy Pipich
- Jülich Centre for Neutron
Science JCNS-FRM II, Forschungszentrum Jülich GmbH, Outstation at FRM II, Lichtenbergstraße 1,
D-85747 Garching, Germany
| | - Dieter Richter
- Jülich Centre for Neutron
Science JCNS and Institute for Complex Systems ICS, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
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Iwase H, Endo H, Katagiri M, Shibayama M. Modernization of the small-angle neutron scattering spectrometer SANS-U by upgrade to a focusing SANS spectrometer. J Appl Crystallogr 2011. [DOI: 10.1107/s0021889811007527] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The small-angle neutron scattering spectrometer SANS-U at the research reactor (JRR-3) of the Japan Atomic Energy Agency, Tokai, Japan, has been successfully upgraded. This major upgrade was undertaken in order to install a high-resolution position-sensitive detector consisting of a cross-wired position-sensitive photomultiplier tube combined with a ZnS/6LiF scintillator on the SANS-U spectrometer. Without changing the total length of the spectrometer, the aim was to extend the accessible low-Qlimit (Qis the magnitude of the scattering vector) and to shorten the measurement time by employing focusing small-angle neutron scattering (FSANS). By using both spherical MgF2biconcave lenses and the new high-resolution position-sensitive detector, the accessible low-Qlimit was extended from 2.5 × 10−3to 3.8 × 10−4 Å−1. As a result, SANS-U can continuously cover a wideQrange from 3.8 × 10−4to 0.35 Å−1with a wavelength of 7 Å. FSANS can be utilized not only to improve the accessible low-Qlimit but also to increase the intensity of incident neutrons passing through the sample in the conventionalQrange from 2.5 × 10−3to 0.35 Å−1. The use of `high-intensity' FSANS also allowed a reduction of the measuring time by approximately 1/3.16 by increasing the incident neutron intensity.
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